jgi.p|Nanoce1779_2|574301, mRNA_837 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574301
Unique Name	mRNA_837
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1229
Alignment location	scaffold_2:542635..544086 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574387
Track	FilteredModels2
ProteinId	574301

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:542635..544086 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574301	gene_837	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574301	mRNA_837-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_837	CDS_837	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:542635..544086+
coding sequence from alignment at scaffold_2:542635..544086+

mRNA sequence

>mRNA_837 ID=mRNA_837|Name=jgi.p|Nanoce1779_2|574301|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp
ACAGGCAACCGGGCCACTCGCTCGCGGGCCGGGCTCCTACATCTTCTGCT
CCGGAACATGCCTGGCCCCTCCCACGCCCCCTTCCCCCACAAGACCTGGG
CAAACTACTTGGACGTGCTCCTGCCTCTAGTAACAGGCTTTTTGGTCGTG
CCCTTAGAGGATGCGCATGATGCCCCTCAATGGCTGCGGGAACTCTATGC
CCTGAGCCCGGTCACACCGAAATTTGCTCACGAGCACCTTGTCTTTTCCC
GCTCAGCGTGGACGGAAGGCAGGTACTACACCGCCGTGACGCATTGCTTA
TCCCATGAGAACCCCTCACACCTATTCAACAACATCTCTTCACTCGTGTT
TGCTGGAAAGAATGTCTACACACACACCGCAAATACCTTTGAATTCTACC
TGATTTTCTTTTCGAGCGTTGGGGCATCGGCCTACCTAACTACGCTGAAG
GACGAGCTCCAACTCATGCCGATGGCACAGTCTTTTGTGCCACGCAACCC
TTTCCCGTCGTCTTGGAGGCGCTTACATGGGTGGTACGACAACAAGGCTG
GTAAAGTCACTCGTTCTGCGAACCATTTTCTTAGTCAGTATGTCATTTAT
CGGGGCGCGAGCGCGGGTGTATTCGGTTTGATTGGCGCTTCGGCTGTGAT
TCAAGTCGAAGAGTTGTGGGCTTGGGGACATGAGATGTGGATGATCTACC
GACAAAAGACGTCTGTGGATTCGACAACATGGAGGCGGCTGGGTCTAAGC
TTCCTGGGACTAGGTTACAACTTTTGCAGCCTTTATGGCATGATAAAAGG
CGAATATTTGCTCCGGAGCACCAACGATGGTATTGGCCACAGCTTCCACA
TTGATGGATTTGTATCCGGGGCGATTATCTATGTTGGTGTCCGGTGCGCC
GAGGGGGTGACAAAGTACGCCAAGGGGCGTAACCGGCAACGCGGTATCGG
TCGTCGTCTGGGAGGGAGAGGGACAACTGAGACTTAAGGGAACCATGTAA
CAAAAGCTCTTTTTGATAACTCCAAATGTATAAAATAGCAATTTTCGATG
TAATTCAGACTTGAAGAGGAATCATGAAGAGTCTCGCATGAAACCTGTTT
GTCTGGATTGTTTTTATTTATAGCTCTTGGTATACATGACTATCTATCGT
CCCTCATTTTCCCACAATCGCTCGCGACTAAGCCTAGAGATTACACCATC
GGCTATACTAGACGGCGCCATAGGCGATA

protein sequence of jgi.p|Nanoce1779_2|574301

>mRNA_837-protein ID=mRNA_837-protein|Name=jgi.p|Nanoce1779_2|574301|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MPGPSHAPFPHKTWANYLDVLLPLVTGFLVVPLEDAHDAPQWLRELYALS
PVTPKFAHEHLVFSRSAWTEGRYYTAVTHCLSHENPSHLFNNISSLVFAG
KNVYTHTANTFEFYLIFFSSVGASAYLTTLKDELQLMPMAQSFVPRNPFP
SSWRRLHGWYDNKAGKVTRSANHFLSQYVIYRGASAGVFGLIGASAVIQV
EELWAWGHEMWMIYRQKTSVDSTTWRRLGLSFLGLGYNFCSLYGMIKGEY
LLRSTNDGIGHSFHIDGFVSGAIIYVGVRCAEGVTKYAKGRNRQRGIGRR
LGGRGTTET*

mRNA from alignment at scaffold_2:542635..544086+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_837 ID=mRNA_837|Name=jgi.p|Nanoce1779_2|574301|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp|location=Sequence derived from alignment at scaffold_2:542635..544086+ (Nannochloropsis oceanica)
ACAGGCAACCGGGCCACTCGCTCGCGGGCCGGGCTCCTACATCTTCTGCT
CCGGAACATGCCTGGCCCCTCCCACGCCCCCTTCCCCCACAAGACCTGGG
CAAACTACTTGGACGTGCTCCTGCCTCTAGTAACAGGCTTTTTGGTCGTG
CCCTTAGAGGATGCGCATGATGCCCCTCAATGGCTGCGGGAACTCTATGC
CCTGAGCCCGGTCACACCGAAATTTGCTCACGAGCACCTTGTCTTTTCCC
GCTCAGCGTGGACGGAAGGCAGGTACTACACCGCCGTGACGCATTGCTTA
TCCCATGAGAACCCCTCACACCTATTCAACAACATCTCTTCACTCGTGTT
TGCTGGAAAGAATGTCTACACACACACCGCAAATACCTTTGAATTCTACC
TGATTTTCTTTTCGAGCGTTGGGGCATCGGCCTACCTAACTACGCTGAAG
GACGAGCTCCAACTCATGCCGATGGCACAGTCTTTTGTGCCACGCAACCC
TTTCCCGTCGTCTTGGAGGCGCTTACATGGGTGGTACGACAACAAGGCTG
GTAAAGTCACTCGTTCTGCGAACCATTTTCTTAGTCAGTATGTCATTTAT
CGGGGCGCGAGCGCGGGTGTATTCGGTTTGATTGGCGCTTCGGCTGTGAT
TCAAGTCGAAGAGTTGTGGGCTTGGGGACATGAGATGTGGATGATCTACC
GACAAAAGACGTCTGTGGATTCGACAACATGGAGGCGGCTGGGTCTAAGC
TTCCTGGGACTAGGTAAGAAGATGATTTAAGCTTTTGGAGGTTGGTTGGT
CGGGGATGTAGATGCATAAGACTTTCTGACTGATCGTGAGATAGGCTTGC
GCGAGTGAGTAAAATTATTTAATCGCACTTTCTAAGTGAAATCAATGAGA
CTTACCGTAATGTATGGACTTCGCTAGTCCATTCCTGCTTTGCAGACAAG
CAAGTAACTTACAAGCGTCACACACTTTCGTATTAGGTTACAACTTTTGC
AGCCTTTATGGCATGATAAAAGGCGAATATTTGCTCCGGAGCACCAACGA
TGGTATTGGCCACAGCTTCCACATTGATGGATTTGTATCCGGGGCGATTA
TCTATGTTGGTGTCCGGTGCGCCGAGGGGGTGACAAAGTACGCCAAGGGG
CGTAACCGGCAACGCGGTATCGGTCGTCGTCTGGGAGGGAGAGGGACAAC
TGAGACTTAAGGGAACCATGTAACAAAAGCTCTTTTTGATAACTCCAAAT
GTATAAAATAGCAATTTTCGATGTAATTCAGACTTGAAGAGGAATCATGA
AGAGTCTCGCATGAAACCTGTTTGTCTGGATTGTTTTTATTTATAGCTCT
TGGTATACATGACTATCTATCGTCCCTCATTTTCCCACAATCGCTCGCGA
CTAAGCCTAGAGATTACACCATCGGCTATACTAGACGGCGCCATAGGCGA
TA

Coding sequence (CDS) from alignment at scaffold_2:542635..544086+

>mRNA_837 ID=mRNA_837|Name=jgi.p|Nanoce1779_2|574301|organism=Nannochloropsis oceanica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_2:542635..544086+ (Nannochloropsis oceanica)
ATGCCTGGCCCCTCCCACGCCCCCTTCCCCCACAAGACCTGGGCAAACTA
CTTGGACGTGCTCCTGCCTCTAGTAACAGGCTTTTTGGTCGTGCCCTTAG
AGGATGCGCATGATGCCCCTCAATGGCTGCGGGAACTCTATGCCCTGAGC
CCGGTCACACCGAAATTTGCTCACGAGCACCTTGTCTTTTCCCGCTCAGC
GTGGACGGAAGGCAGGTACTACACCGCCGTGACGCATTGCTTATCCCATG
AGAACCCCTCACACCTATTCAACAACATCTCTTCACTCGTGTTTGCTGGA
AAGAATGTCTACACACACACCGCAAATACCTTTGAATTCTACCTGATTTT
CTTTTCGAGCGTTGGGGCATCGGCCTACCTAACTACGCTGAAGGACGAGC
TCCAACTCATGCCGATGGCACAGTCTTTTGTGCCACGCAACCCTTTCCCG
TCGTCTTGGAGGCGCTTACATGGGTGGTACGACAACAAGGCTGGTAAAGT
CACTCGTTCTGCGAACCATTTTCTTAGTCAGTATGTCATTTATCGGGGCG
CGAGCGCGGGTGTATTCGGTTTGATTGGCGCTTCGGCTGTGATTCAAGTC
GAAGAGTTGTGGGCTTGGGGACATGAGATGTGGATGATCTACCGACAAAA
GACGTCTGTGGATTCGACAACATGGAGGCGGCTGGGTCTAAGCTTCCTGG
GACTAGGTTACAACTTTTGCAGCCTTTATGGCATGATAAAAGGCGAATAT
TTGCTCCGGAGCACCAACGATGGTATTGGCCACAGCTTCCACATTGATGG
ATTTGTATCCGGGGCGATTATCTATGTTGGTGTCCGGTGCGCCGAGGGGG
TGACAAAGTACGCCAAGGGGCGTAACCGGCAACGCGGTATCGGTCGTCGT
CTGGGAGGGAGAGGGACAACTGAGACTTAAATGCCTGGCCCCTCCCACGC
CCCCTTCCCCCACAAGACCTGGGCAAACTACTTGGACGTGCTCCTGCCTC
TAGTAACAGGCTTTTTGGTCGTGCCCTTAGAGGATGCGCATGATGCCCCT
CAATGGCTGCGGGAACTCTATGCCCTGAGCCCGGTCACACCGAAATTTGC
TCACGAGCACCTTGTCTTTTCCCGCTCAGCGTGGACGGAAGGCAGGTACT
ACACCGCCGTGACGCATTGCTTATCCCATGAGAACCCCTCACACCTATTC
AACAACATCTCTTCACTCGTGTTTGCTGGAAAGAATGTCTACACACACAC
CGCAAATACCTTTGAATTCTACCTGATTTTCTTTTCGAGCGTTGGGGCAT
CGGCCTACCTAACTACGCTGAAGGACGAGCTCCAACTCATGCCGATGGCA
CAGTCTTTTGTGCCACGCAACCCTTTCCCGTCGTCTTGGAGGCGCTTACA
TGGGTGGTACGACAACAAGGCTGGTAAAGTCACTCGTTCTGCGAACCATT
TTCTTAGTCAGTATGTCATTTATCGGGGCGCGAGCGCGGGTGTATTCGGT
TTGATTGGCGCTTCGGCTGTGATTCAAGTCGAAGAGTTGTGGGCTTGGGG
ACATGAGATGTGGATGATCTACCGACAAAAGACGTCTGTGGATTCGACAA
CATGGAGGCGGCTGGGTCTAAGCTTCCTGGGACTAGGTTACAACTTTTGC
AGCCTTTATGGCATGATAAAAGGCGAATATTTGCTCCGGAGCACCAACGA
TGGTATTGGCCACAGCTTCCACATTGATGGATTTGTATCCGGGGCGATTA
TCTATGTTGGTGTCCGGTGCGCCGAGGGGGTGACAAAGTACGCCAAGGGG
CGTAACCGGCAACGCGGTATCGGTCGTCGTCTGGGAGGGAGAGGGACAAC
TGAGACTTAA

Synonyms

Publications