jgi.p|Nanoce1779_2|573685, mRNA_658 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573685
Unique NamemRNA_658
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length824
Alignment locationscaffold_2:123162..124305 -

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Properties
Property NameValue
TranscriptId573771
TrackFilteredModels2
ProteinId573685
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:123162..124305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573685gene_658Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573685mRNA_658-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_658CDS_658Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_658 ID=mRNA_658|Name=jgi.p|Nanoce1779_2|573685|organism=Nannochloropsis oceanica|type=mRNA|length=824bp
ACAGAACTCGGTGTGGTAGTTTTTTCAGCGCACAAAAGCATGACCAGCGT
TGTCGACGACGTCCCGCCACCGGCGATCATCACAGACGACACCACAGAGT
CAACGACCACCGGCACCAGCAGCAGTCACTTGGCCCTGCCTGCTGCCAGC
CCGAGCCCCCACACGAAGACGCTAAAGGGCGAGCTTAAACGCCTCATTGG
CGCCTACCATAACAGTCTCGTCAGCCGGCCCCTCGCCACGAAAGCCGTGA
CCAGTGCACTCATCTCCGCCTTGGGCGACGTCTTGGCCTCGTCAGGTCGT
GCGGGGAGAGGGCGCAACGGCAAACGAACGCTTGGGTTCCTTCTATTCGG
AGGCCTGATCACCGGCCCCGTTTGCCACTATTGGTATGGATTCCTCGAAC
GCCATGTAAAGACCTTCCACGGCGCTAAGAATGTGGCAATCAAGGTCCTC
TTAGACAAGCTGCTCTTCACGCCGCCCTTCCTCGCCCTCACTCTTTTCCT
CCTTCGTGCTCTCGAGACGGGTCGCTTCGGACCGGCTTGGCAAGGGATGA
AACATATTTACGTACCTACGTTAAAGACGAATTTGAAGGTCTGGACGGTG
GCCCAAGCCATCAATTTTACCTACACCCCCCCGGCGTATCGGGTCTTGTT
TGGGAATGTGGTGGCGTTGTGGTGGAGCTTTTACTTGTCCCGATTGGGGG
GAGGGGCCGGAGGAGGGGCAGGGAAAGCGTCGTCCATTGTGATTGTGCGG
AGGAGTTATTAATTTGTCGGGATGCGTCTTGGGTTTGTTGATAGAAAGGA
AGGGACGCAGGCGAGGGAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|573685

>mRNA_658-protein ID=mRNA_658-protein|Name=jgi.p|Nanoce1779_2|573685|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MTSVVDDVPPPAIITDDTTESTTTGTSSSHLALPAASPSPHTKTLKGELK
RLIGAYHNSLVSRPLATKAVTSALISALGDVLASSGRAGRGRNGKRTLGF
LLFGGLITGPVCHYWYGFLERHVKTFHGAKNVAIKVLLDKLLFTPPFLAL
TLFLLRALETGRFGPAWQGMKHIYVPTLKTNLKVWTVAQAINFTYTPPAY
RVLFGNVVALWWSFYLSRLGGGAGGGAGKASSIVIVRRSY*
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mRNA from alignment at scaffold_2:123162..124305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_658 ID=mRNA_658|Name=jgi.p|Nanoce1779_2|573685|organism=Nannochloropsis oceanica|type=mRNA|length=1144bp|location=Sequence derived from alignment at scaffold_2:123162..124305- (Nannochloropsis oceanica)
ACAGAACTCGGTGTGGTAGTTTTTTCAGCGCACAAAAGCATGACCAGCGT
TGTCGACGACGTCCCGCCACCGGCGATCATCACAGACGACACCACAGAGT
CAACGACCACCGGCACCAGCAGCAGTCACTTGGCCCTGCCTGCTGCCAGC
CCGAGCCCCCACACGAAGACGCTAAAGGTACGCGTATGCATGTGTAATGG
GTAGGGTAGATACGTTGAGAATCTCCTCTTGGACCTTGGCCCAGACTCGA
ATGTTGCCAGCTATCGCACCTCGAAATGCGCTCATAATTTGCGTACACCA
CTTTCAAAGTTACGCGTCGCCAGATGCACCACATTGAGGCGTGTTTTGGC
TCCTAAACTGCCTGGCTTGATTTCCATTTGTCTCCTCCCTTTTTCCATCA
TTCCCTTCGCCCTTCCCCCCCACATACTCCCGCGCACTCTCACGACGCAT
CCCGTCCCCTGGTCCTATCTCTTACTCCCTCCATTTCTCATACGCAGGGC
GAGCTTAAACGCCTCATTGGCGCCTACCATAACAGTCTCGTCAGCCGGCC
CCTCGCCACGAAAGCCGTGACCAGTGCACTCATCTCCGCCTTGGGCGACG
TCTTGGCCTCGTCAGGTCGTGCGGGGAGAGGGCGCAACGGCAAACGAACG
CTTGGGTTCCTTCTATTCGGAGGCCTGATCACCGGCCCCGTTTGCCACTA
TTGGTATGGATTCCTCGAACGCCATGTAAAGACCTTCCACGGCGCTAAGA
ATGTGGCAATCAAGGTCCTCTTAGACAAGCTGCTCTTCACGCCGCCCTTC
CTCGCCCTCACTCTTTTCCTCCTTCGTGCTCTCGAGACGGGTCGCTTCGG
ACCGGCTTGGCAAGGGATGAAACATATTTACGTACCTACGTTAAAGACGA
ATTTGAAGGTCTGGACGGTGGCCCAAGCCATCAATTTTACCTACACCCCC
CCGGCGTATCGGGTCTTGTTTGGGAATGTGGTGGCGTTGTGGTGGAGCTT
TTACTTGTCCCGATTGGGGGGAGGGGCCGGAGGAGGGGCAGGGAAAGCGT
CGTCCATTGTGATTGTGCGGAGGAGTTATTAATTTGTCGGGATGCGTCTT
GGGTTTGTTGATAGAAAGGAAGGGACGCAGGCGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_2:123162..124305-

>mRNA_658 ID=mRNA_658|Name=jgi.p|Nanoce1779_2|573685|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at scaffold_2:123162..124305- (Nannochloropsis oceanica)
GGCGAGCTTAAACGCCTCATTGGCGCCTACCATAACAGTCTCGTCAGCCG
GCCCCTCGCCACGAAAGCCGTGACCAGTGCACTCATCTCCGCCTTGGGCG
ACGTCTTGGCCTCGTCAGGTCGTGCGGGGAGAGGGCGCAACGGCAAACGA
ACGCTTGGGTTCCTTCTATTCGGAGGCCTGATCACCGGCCCCGTTTGCCA
CTATTGGTATGGATTCCTCGAACGCCATGTAAAGACCTTCCACGGCGCTA
AGAATGTGGCAATCAAGGTCCTCTTAGACAAGCTGCTCTTCACGCCGCCC
TTCCTCGCCCTCACTCTTTTCCTCCTTCGTGCTCTCGAGACGGGTCGCTT
CGGACCGGCTTGGCAAGGGATGAAACATATTTACGTACCTACGTTAAAGA
CGAATTTGAAGGTCTGGACGGTGGCCCAAGCCATCAATTTTACCTACACC
CCCCCGGCGTATCGGGTCTTGTTTGGGAATGTGGTGGCGTTGTGGTGGAG
CTTTTACTTGTCCCGATTGGGGGGAGGGGCCGGAGGAGGGGCAGGGAAAG
CGTCGTCCATTGTGATTGTGCGGAGGAGTTATTAAATGACCAGCGTTGTC
GACGACGTCCCGCCACCGGCGATCATCACAGACGACACCACAGAGTCAAC
GACCACCGGCACCAGCAGCAGTCACTTGGCCCTGCCTGCTGCCAGCCCGA
GCCCCCACACGAAGACGCTAAAGGGCGAGCTTAAACGCCTCATTGGCGCC
TACCATAACAGTCTCGTCAGCCGGCCCCTCGCCACGAAAGCCGTGACCAG
TGCACTCATCTCCGCCTTGGGCGACGTCTTGGCCTCGTCAGGTCGTGCGG
GGAGAGGGCGCAACGGCAAACGAACGCTTGGGTTCCTTCTATTCGGAGGC
CTGATCACCGGCCCCGTTTGCCACTATTGGTATGGATTCCTCGAACGCCA
TGTAAAGACCTTCCACGGCGCTAAGAATGTGGCAATCAAGGTCCTCTTAG
ACAAGCTGCTCTTCACGCCGCCCTTCCTCGCCCTCACTCTTTTCCTCCTT
CGTGCTCTCGAGACGGGTCGCTTCGGACCGGCTTGGCAAGGGATGAAACA
TATTTACGTACCTACGTTAAAGACGAATTTGAAGGTCTGGACGGTGGCCC
AAGCCATCAATTTTACCTACACCCCCCCGGCGTATCGGGTCTTGTTTGGG
AATGTGGTGGCGTTGTGGTGGAGCTTTTACTTGTCCCGATTGGGGGGAGG
GGCCGGAGGAGGGGCAGGGAAAGCGTCGTCCATTGTGATTGTGCGGAGGA
GTTATTAAATGACCAGCGTTGTCGACGACGTCCCGCCACCGGCGATCATC
ACAGACGACACCACAGAGTCAACGACCACCGGCACCAGCAGCAGTCACTT
GGCCCTGCCTGCTGCCAGCCCGAGCCCCCACACGAAGACGCTAAAG
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Synonyms
Publications