jgi.p|Nanoce1779_2|598829, mRNA_7458 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598829
Unique NamemRNA_7458
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length702
Alignment locationscaffold_20:8807..10185 +

Link to JBrowse

Properties
Property NameValue
TranscriptId598915
TrackFilteredModels2
ProteinId598829
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:8807..10185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598829gene_7458Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598829mRNA_7458-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7458CDS_7458Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7458 ID=mRNA_7458|Name=jgi.p|Nanoce1779_2|598829|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
ACAGGCATTTATCTATCGTTGAAAGACTTCTTCCTCCGGTAGATCTTAGC
CAAGATGGGTCGCATGCACAGCTCCGGCAAGGGCATGGCCTCCTCCGCCA
TCCCCTACAAGCGCACCCCCCCCTTCGATGTGGAGGAGCACGTGTGCAAG
CTGGCGAAGAAGGGCCTGACCCCTTCCAACATCGGTGTGATTCTTAGGGA
CTCCTACGGCATTGCGCAGGTCAAGTCCGTGACCGGCTCTAAGATTTTGC
GTCTGCTCAAGAAGAACCTCCTGGCTCCGGAAATTCCCGAGGATCTGTAC
ATGTTGATCAAGAAAGCCGTGGCTGTGCGTAAGCATTTGGAGCGCAACCG
CAAGGATAAGGACAGCAAATTCCGCCTCATTCTCATCGAGAGCCGCATTC
ACCGATTGGCCCGCTACTACCGAACGACCCGCAAGCTGACCCCCAACTGG
AAGTACGAGTCTTCGACGGCCGCGTCTCTGGTGGCGTAAACATCGCCTCA
TGCTGAAGGAGGGAAGGAGGGAAGGAGAGAGGATGGGTGAGAAGGGTCTT
TATCCGATGGTGGGCTTAGGCTGAGCTTGCGGATAGACAGGAGCTGAACT
TCTGTTGTTCTGGGGGTAGGCAAATGAAGGAAGAAAGGAGAAGGGCGAAA
ACTTCCTATCCACCTAAAGATGAGACATAGAAATAAGGCAACCCATTCAG
AA
back to top

protein sequence of jgi.p|Nanoce1779_2|598829

>mRNA_7458-protein ID=mRNA_7458-protein|Name=jgi.p|Nanoce1779_2|598829|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MGRMHSSGKGMASSAIPYKRTPPFDVEEHVCKLAKKGLTPSNIGVILRDS
YGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRK
DKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLVA*
back to top

mRNA from alignment at scaffold_20:8807..10185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7458 ID=mRNA_7458|Name=jgi.p|Nanoce1779_2|598829|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp|location=Sequence derived from alignment at scaffold_20:8807..10185+ (Nannochloropsis oceanica)
ACAGGCATTTATCTATCGTTGAAAGACTTCTTCCTCCGGTAGATCTTAGC
CAAGGTAAGAAGAGGGGCATGCAGCAAGGAGAAAGAAATGATTGCATGAT
GAGGAATAGAAGGGGAGGAGGGAGGGATATGATGGGAAGCGAAAGCGCAT
ATTCCTGGTGGTCTGCTGCCTGATGGGGACGCGTCTAGCTGTGACACTGA
GGACGGTGGCTGCTGGTGGCTGCGGGCGCTGCCTTGGTGATCAATGGGAG
TAAGGGAGGGAAGGAGGTAGCGTGAACGGATGACGCGGAGAAGTTTAGGG
GTCTCTTTACGTATCGCCCCTGCCGCCCGGCCTCTCTGCGATAAATGTGC
CTGTTACCACCCTGCAGCCTCTATTCTTCACTGTGTTCCTGTTTTCCAAA
CAGCCTCTATTCTTCCCTGTCTTTTGTTGCAGTGGCGTCATCCTCTCTTT
GCCCCAGTCGTCGTTCTCTCGACTCACTCACTCCCCCCCCTCCTTCCCTC
CCTCCATCCACAGATGGGTCGCATGCACAGCTCCGGCAAGGGCATGGCCT
CCTCCGCCATCCCCTACAAGCGCACCCCCCCCTTCGTGGGTCAAGGCCAC
GGCCAAGGATGTGGAGGAGCACGTGTGCAAGCTGGCGAAGAAGGGCCTGA
CCCCTTCCAACATCGGTGTGATTCTTAGGGACTCCTACGGCATTGCGCAG
GTCAAGTCCGTGACCGGCTCTAAGATTTTGCGTCTGCTCAAGAAGAACCT
CCTGGCTCCGGAAATTCCCGAGGATCTGTACATGTTGATCAAGAAAGCCG
TGGCTGTGCGTAAGCATTTGGAGCGCAACCGCAAGGATAAGGACAGCAAA
TTCCGCCTCATTCTCATCGAGAGCCGCATTCACCGATTGGTACGTCGCGC
ACCTGTATTCCTTCCTCTTCCCTTCCTCCTCACCTTTGTTGCGCCTAGAT
TCCATGTGTGTGCGACGGAGCATGCAAGGTGTTATTCGAATCATGGTTTT
CGTCGGATGTCGCCATTGTTACTTACTCTCTTTCTCTTTCCCTCCCTCCC
TCCCTCCCTCTCCCTCCTTTCCTCCCTCCCCGCAGGCCCGCTACTACCGA
ACGACCCGCAAGCTGACCCCCAACTGGAAGTACGAGTCTTCGACGGCCGC
GTCTCTGGTGGCGTAAACATCGCCTCATGCTGAAGGAGGGAAGGAGGGAA
GGAGAGAGGATGGGTGAGAAGGGTCTTTATCCGATGGTGGGCTTAGGCTG
AGCTTGCGGATAGACAGGAGCTGAACTTCTGTTGTTCTGGGGGTAGGCAA
ATGAAGGAAGAAAGGAGAAGGGCGAAAACTTCCTATCCACCTAAAGATGA
GACATAGAAATAAGGCAACCCATTCAGAA
back to top

Coding sequence (CDS) from alignment at scaffold_20:8807..10185+

>mRNA_7458 ID=mRNA_7458|Name=jgi.p|Nanoce1779_2|598829|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_20:8807..10185+ (Nannochloropsis oceanica)
ATGGGTCGCATGCACAGCTCCGGCAAGGGCATGGCCTCCTCCGCCATCCC
CTACAAGCGCACCCCCCCCTTCGATGTGGAGGAGCACGTGTGCAAGCTGG
CGAAGAAGGGCCTGACCCCTTCCAACATCGGTGTGATTCTTAGGGACTCC
TACGGCATTGCGCAGGTCAAGTCCGTGACCGGCTCTAAGATTTTGCGTCT
GCTCAAGAAGAACCTCCTGGCTCCGGAAATTCCCGAGGATCTGTACATGT
TGATCAAGAAAGCCGTGGCTGTGCGTAAGCATTTGGAGCGCAACCGCAAG
GATAAGGACAGCAAATTCCGCCTCATTCTCATCGAGAGCCGCATTCACCG
ATTGGCCCGCTACTACCGAACGACCCGCAAGCTGACCCCCAACTGGAAGT
ACGAGTCTTCGACGGCCGCGTCTCTGGTGGCGTAAATGGGTCGCATGCAC
AGCTCCGGCAAGGGCATGGCCTCCTCCGCCATCCCCTACAAGCGCACCCC
CCCCTTCGATGTGGAGGAGCACGTGTGCAAGCTGGCGAAGAAGGGCCTGA
CCCCTTCCAACATCGGTGTGATTCTTAGGGACTCCTACGGCATTGCGCAG
GTCAAGTCCGTGACCGGCTCTAAGATTTTGCGTCTGCTCAAGAAGAACCT
CCTGGCTCCGGAAATTCCCGAGGATCTGTACATGTTGATCAAGAAAGCCG
TGGCTGTGCGTAAGCATTTGGAGCGCAACCGCAAGGATAAGGACAGCAAA
TTCCGCCTCATTCTCATCGAGAGCCGCATTCACCGATTGGCCCGCTACTA
CCGAACGACCCGCAAGCTGACCCCCAACTGGAAGTACGAGTCTTCGACGG
CCGCGTCTCTGGTGGCGTAAATGGGTCGCATGCACAGCTCCGGCAAGGGC
ATGGCCTCCTCCGCCATCCCCTACAAGCGCACCCCCCCCTTCGATGTGGA
GGAGCACGTGTGCAAGCTGGCGAAGAAGGGCCTGACCCCTTCCAACATCG
GTGTGATTCTTAGGGACTCCTACGGCATTGCGCAGGTCAAGTCCGTGACC
GGCTCTAAGATTTTGCGTCTGCTCAAGAAGAACCTCCTGGCTCCGGAAAT
TCCCGAGGATCTGTACATGTTGATCAAGAAAGCCGTGGCTGTGCGTAAGC
ATTTGGAGCGCAACCGCAAGGATAAGGACAGCAAATTCCGCCTCATTCTC
ATCGAGAGCCGCATTCACCGATTGGCCCGCTACTACCGAACGACCCGCAA
GCTGACCCCCAACTGGAAGTACGAGTCTTCGACGGCCGCGTCTCTGGTGG
CGTAA
back to top
Synonyms
Publications