jgi.p|Nanoce1779_2|545481, mRNA_7677 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|545481
Unique Name	mRNA_7677
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1681
Alignment location	scaffold_21:51999..54539 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	545567
Track	FilteredModels2
ProteinId	545481

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:51999..54539 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545481	gene_7677	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545481	mRNA_7677-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7677	CDS_7677	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:51999..54539+
coding sequence from alignment at scaffold_21:51999..54539+

mRNA sequence

>mRNA_7677 ID=mRNA_7677|Name=jgi.p|Nanoce1779_2|545481|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp
GGAGAGAAAAAAGAGTTGCCAGAAGAGGCTTCTCTCTCGCAGGAGAGCCC
TTTATTAAACAGCCTGCTTTCGAGGCTACCAAAGTACCAAAAGTAATATA
GAAAAAAGGGGAAGTAAGTGTGGCGGGCAAAGTGGGCAAGGCAAAGAGAA
GGAGCTACGGCGAGACGCAAGTAAATTAAATCGTCATGTTTTGAAAAATC
AAAATAAACCGTCACTTTCTCTCCCTTCTCAACCGCTGCGCTACCACCAG
AAGGCGCGGCACGTCATACCTCTCATTGCCATGGTCGCTAGAAAGACGAA
GACTTTGTTTGCGGACTTCCCATGTGGACTCAGTGTGATAAGAAGAGGAA
ATCATTTCTCTCTGCGTGTGCCCAATCAGGAAAGAATAATGGAGAGTCTT
CGTGTGCAAGAATGAGTGGGACCCGCATGTTCTTCAGCGCACCCAACCAG
AAATATGCAAGGAACAGGACTTTTATGACTATACGGATGTCAATCGATTT
TATGTTCATGCGATGCCCTGTCCTATATTTTTAAATTCATAGCTGTCCGC
ATTCATTTCCTTCCTGTTCCCCACATGGTACACAGAAGGAAGATAACGAC
GGTCGAACACGTGGGGTAGCGGGGGGTGAATCGCCTCGCCTGAGGTTTCA
CAAGAATGGGTCTGGACGACTTTGACGTAATTCAAACCCTGGGCAAGGGG
GCGTTCGCCCGTGTGGACAAGGTGAAGCGGAAGGTAGACGCAAAAATATA
TGCCTTGAAGCGCGTCGACATCTCGAATATCCCACCCAAGGACCTCGAAG
ACTCGTTGAATGAGATCCGCATTCTCGCCTCGTTCAAGCATCCCCGGCTT
ATTCGGTGGTACGAGACGTTCGTTGAGTCCGAGTTACAAGAATTGTGCAT
CGTCATGGAGCTATGCCCATATGGGGACTTGGAGCAGAAGATCAAGCGGC
ATCAGCACCGGAAGGAGTACATTGACGAAAGGGAAATATGGGTCTACTCA
GTCAACCTTCTCGAAGGCCTCGCCGCCCTGCATGCCAAGGGCGTGTGTCA
CCGTGACCTCAAGCCAGCTAATTGCCTAATAGACAAACACGGCTGCATCA
AGATCGCAGACATGAACATCTCCAAGGTGTCCAAGGGGGGGAATGGAGGG
ATGATGCAGACCCAGGTTGGCACGCCATACTTCATCTGTCCCGAGATTTA
CCTCAAGAAGCCTTACTCATCCATGTCAGACATGTGGTCCTTGGGAGGCG
TGCTGTACAATCTAGCGGCATTGCACCCTCCTTTTTTGGCGGACAACATC
CAAAACCTCCGCAAGGTTGTCGTCCGTGGGGCCTACGACCCCCTACCCAA
CGTCTATGGCACGAGCCTCGCCGCTCTAATCGGCCGCCTGCTTCAAATCA
ATCCCAGCGATCGTCCTGAAGCCAAAGACATCTTGAAAGACCCTTTGGTT
GAACGCCACAAGTACCTCCTCCTCCACCCCCTCCCCGTCGGGTCTGAGGA
GGCGGAGGGCGAAATGCTTCCCACCATTCGTGTCGCCTCTGATAAGGGAG
GCGTGAAGACCATTACGCTCCCAGGGCCCGCGTATGAGGAGGAGGGAGGG
AATGAGGGAGGGGTAGGGAGCCCCAAAAGTCCCAAATCTCCGACAAGTGT
CTTTGTTGTGTACAGCCCGCGGGCGAAGGAG

protein sequence of jgi.p|Nanoce1779_2|545481

>mRNA_7677-protein ID=mRNA_7677-protein|Name=jgi.p|Nanoce1779_2|545481|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MGLDDFDVIQTLGKGAFARVDKVKRKVDAKIYALKRVDISNIPPKDLEDS
LNEIRILASFKHPRLIRWYETFVESELQELCIVMELCPYGDLEQKIKRHQ
HRKEYIDEREIWVYSVNLLEGLAALHAKGVCHRDLKPANCLIDKHGCIKI
ADMNISKVSKGGNGGMMQTQVGTPYFICPEIYLKKPYSSMSDMWSLGGVL
YNLAALHPPFLADNIQNLRKVVVRGAYDPLPNVYGTSLAALIGRLLQINP
SDRPEAKDILKDPLVERHKYLLLHPLPVGSEEAEGEMLPTIRVASDKGGV
KTITLPGPAYEEEGGNEGGVGSPKSPKSPTSVFVVYSPRAKE

mRNA from alignment at scaffold_21:51999..54539+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7677 ID=mRNA_7677|Name=jgi.p|Nanoce1779_2|545481|organism=Nannochloropsis oceanica|type=mRNA|length=2541bp|location=Sequence derived from alignment at scaffold_21:51999..54539+ (Nannochloropsis oceanica)
GGAGAGAAAAAAGAGTTGCCAGAAGAGGCTTCTCTCTCGCAGGAGAGCCC
TTTATTAAACAGCCTGCTTTCGAGGCTACCAAAGTACCAAAAGTAATATA
GAAAAAAGGGGAAGTAAGTGTGGCGGGCAAAGTGGGCAAGGCAAAGAGAA
GGAGCTACGGCGAGACGCAAGTAAATTAAATCGTCATGTTTTGAAAAATC
AAAATAAACCGTCACTTTCTCTCCCTTCTCAACCGCTGCGCTACCACCAG
AAGGCGCGGCACGTCATACCTCTCATTGCCATGGTCGCTAGAAAGACGAA
GACTTTGTTTGCGGACTTCCCATGTGGACTCAGTGTGATAAGAAGAGGAA
ATCATTTCTCTCTGCGTGTGCCCAATCAGGAAAGAATAATGGAGAGTCTT
CGTGTGCAAGAATGAGTGGGACCCGCATGTTCTTCAGCGCACCCAACCAG
AAATATGCAAGGAACAGGACTTTTATGACTATACGGATGTCAATCGATTT
TATGTTCATGCGATGCCCTGTCCTATATTTTTAAATTCATAGCTGTCCGC
ATTCATTTCCTTCCTGTTCCCCACATGGTACACAGAAGGAAGATAACGAC
GGTCGAACACGTGGGGTAGCGGGGGGTGAATCGCCTCGCCTGAGGTTTCA
CAAGAATGGGTCTGGACGACTTTGACGTAATTCAAACCCTGGGCAAGGGG
GCGTTCGCCCGTGTGGACAAGGTATGTGTCGTGTGTGTGCCCCCAGCGAG
GATTGAAAACATCTCTAGAGGGAGGGGAGCGCGATGGCGTGCCTGCTGAC
AGCCGGCTTCGAGTCTGAGATACTGGTCAGCCAATTTCTCTTCAGGGCAG
CAGCATTCGGCACCTTTCCTGTCCAAGTTGGCAAAGGGATGGAGAGAAGG
GAATGGGAGGGGAGACTAGCACACTGTGGCCTCTAGTCGTCGTTATCGTC
GTCTTTAGTTTTCAGCAGTGGGACATACCAAAATCATACACTCACGTACA
TGTATCACAACAAGCTTGTAAAAATACCTCCTAATTCTTCAACCCAAACA
CAAATGCCGTTTCCCCCTTCTACTCTCCTACCCTTCTCTAGGTGAAGCGG
AAGGTAGACGCAAAAATATATGCCTTGAAGCGCGTCGACATCTCGAATAT
CCCACCCAAGGTACGGCACGGGATACTTGATAGTAATGGATATCTGACGG
GGCTTCAGAAGAATGACAGAGAAGGAGAGGGATAGTATTGCTCAGGTCAC
AGTGTGTGTGCTGACAATCAAGTCAATCTCTCTACCCTTCCTCCCCCCTT
CCCTTCCTCCCTTTGAAACAGGACCTCGAAGACTCGTTGAATGAGATCCG
CATTCTCGCCTCGTTCAAGCATCCCCGGCTTATTCGGTGGTACGAGACGT
TCGTTGAGTCCGAGTTACAAGAATTGTGCATCGTCATGGAGCTATGCCCA
TATGGGGACTTGGAGCAGAAGATCAAGCGGCATCAGCACCGGAAGGAGTA
CATTGACGAAAGGTATGTATGTTTGTTTGTTAGTGCGTATGATGTTTGCA
TCTTCGTCTATCCATCGTCTCCTGTCCTATCTCCGTACTGCCTTGAGAAC
TTTCCATCCCACCACCGCAGCCGCCAGTCACTCCAACCCTTCCTCCTTCC
CTCCCTCCCTCCCTCCCTCCTGCCTCCCCTCCATAGGGAAATATGGGTCT
ACTCAGTCAACCTTCTCGAAGGCCTCGCCGCCCTGCATGCCAAGGGCGTG
TGTCACCGTGACCTCAAGCCAGCTAATTGCCTAATAGACAAACACGGCTG
CATCAAGATCGCAGACATGAACATCTCCAAGGTGTCCAAGGGGGGGAATG
GAGGGATGATGCAGACCCAGGTTGGCACGCCATACTTCATCTGTCCCGAG
ATTTACCTCAAGAAGCCTTACTCATCCATGTCAGACATGTGGTCCTTGGG
AGGCGTGCTGTACAATCTAGCGGCATTGCACCCTCCTTTTTTGGCGGACA
AGTAAGTGGGGGTGTGGTTGGGCGGAAGGAGGGAAGGAGGGAGGGAGGGA
GGACTGGCTGTCAAGCACAGCGGGATCTCTTACCCTCAACATTCATACTC
TCTCCCCTCCTCCATTTCTCACCTCCCTCTTTTCCTTCCTCCCCCCCCCC
CCTCAGCATCCAAAACCTCCGCAAGGTTGTCGTCCGTGGGGCCTACGACC
CCCTACCCAACGTCTATGGCACGAGCCTCGCCGCTCTAATCGGCCGCCTG
CTTCAAATCAATCCCAGCGATCGTCCTGAAGCCAAAGACATCTTGAAAGA
CCCTTTGGTTGAACGCCACAAGTACCTCCTCCTCCACCCCCTCCCCGTCG
GGTCTGAGGAGGCGGAGGGCGAAATGCTTCCCACCATTCGTGTCGCCTCT
GATAAGGGAGGCGTGAAGACCATTACGCTCCCAGGGCCCGCGTATGAGGA
GGAGGGAGGGAATGAGGGAGGGGTAGGGAGCCCCAAAAGTCCCAAATCTC
CGACAAGTGTCTTTGTTGTGTACAGCCCGCGGGCGAAGGAG

Coding sequence (CDS) from alignment at scaffold_21:51999..54539+

>mRNA_7677 ID=mRNA_7677|Name=jgi.p|Nanoce1779_2|545481|organism=Nannochloropsis oceanica|type=CDS|length=5130bp|location=Sequence derived from alignment at scaffold_21:51999..54539+ (Nannochloropsis oceanica)
ATGGGTCTGGACGACTTTGACGTAATTCAAACCCTGGGCAAGGGGGCGTT
CGCCCGTGTGGACAAGGTGAAGCGGAAGGTAGACGCAAAAATATATGCCT
TGAAGCGCGTCGACATCTCGAATATCCCACCCAAGGACCTCGAAGACTCG
TTGAATGAGATCCGCATTCTCGCCTCGTTCAAGCATCCCCGGCTTATTCG
GTGGTACGAGACGTTCGTTGAGTCCGAGTTACAAGAATTGTGCATCGTCA
TGGAGCTATGCCCATATGGGGACTTGGAGCAGAAGATCAAGCGGCATCAG
CACCGGAAGGAGTACATTGACGAAAGGGAAATATGGGTCTACTCAGTCAA
CCTTCTCGAAGGCCTCGCCGCCCTGCATGCCAAGGGCGTGTGTCACCGTG
ACCTCAAGCCAGCTAATTGCCTAATAGACAAACACGGCTGCATCAAGATC
GCAGACATGAACATCTCCAAGGTGTCCAAGGGGGGGAATGGAGGGATGAT
GCAGACCCAGGTTGGCACGCCATACTTCATCTGTCCCGAGATTTACCTCA
AGAAGCCTTACTCATCCATGTCAGACATGTGGTCCTTGGGAGGCGTGCTG
TACAATCTAGCGGCATTGCACCCTCCTTTTTTGGCGGACAACATCCAAAA
CCTCCGCAAGGTTGTCGTCCGTGGGGCCTACGACCCCCTACCCAACGTCT
ATGGCACGAGCCTCGCCGCTCTAATCGGCCGCCTGCTTCAAATCAATCCC
AGCGATCGTCCTGAAGCCAAAGACATCTTGAAAGACCCTTTGGTTGAACG
CCACAAGTACCTCCTCCTCCACCCCCTCCCCGTCGGGTCTGAGGAGGCGG
AGGGCGAAATGCTTCCCACCATTCGTGTCGCCTCTGATAAGGGAGGCGTG
AAGACCATTACGCTCCCAGGGCCCGCGTATGAGGAGGAGGGAGGGAATGA
GGGAGGGGTAGGGAGCCCCAAAAGTCCCAAATCTCCGACAAGTGTCTTTG
TTGTGTACAGCCCGCGGGCGAAGGAGATGGGTCTGGACGACTTTGACGTA
ATTCAAACCCTGGGCAAGGGGGCGTTCGCCCGTGTGGACAAGGTGAAGCG
GAAGGTAGACGCAAAAATATATGCCTTGAAGCGCGTCGACATCTCGAATA
TCCCACCCAAGGACCTCGAAGACTCGTTGAATGAGATCCGCATTCTCGCC
TCGTTCAAGCATCCCCGGCTTATTCGGTGGTACGAGACGTTCGTTGAGTC
CGAGTTACAAGAATTGTGCATCGTCATGGAGCTATGCCCATATGGGGACT
TGGAGCAGAAGATCAAGCGGCATCAGCACCGGAAGGAGTACATTGACGAA
AGGGAAATATGGGTCTACTCAGTCAACCTTCTCGAAGGCCTCGCCGCCCT
GCATGCCAAGGGCGTGTGTCACCGTGACCTCAAGCCAGCTAATTGCCTAA
TAGACAAACACGGCTGCATCAAGATCGCAGACATGAACATCTCCAAGGTG
TCCAAGGGGGGGAATGGAGGGATGATGCAGACCCAGGTTGGCACGCCATA
CTTCATCTGTCCCGAGATTTACCTCAAGAAGCCTTACTCATCCATGTCAG
ACATGTGGTCCTTGGGAGGCGTGCTGTACAATCTAGCGGCATTGCACCCT
CCTTTTTTGGCGGACAACATCCAAAACCTCCGCAAGGTTGTCGTCCGTGG
GGCCTACGACCCCCTACCCAACGTCTATGGCACGAGCCTCGCCGCTCTAA
TCGGCCGCCTGCTTCAAATCAATCCCAGCGATCGTCCTGAAGCCAAAGAC
ATCTTGAAAGACCCTTTGGTTGAACGCCACAAGTACCTCCTCCTCCACCC
CCTCCCCGTCGGGTCTGAGGAGGCGGAGGGCGAAATGCTTCCCACCATTC
GTGTCGCCTCTGATAAGGGAGGCGTGAAGACCATTACGCTCCCAGGGCCC
GCGTATGAGGAGGAGGGAGGGAATGAGGGAGGGGTAGGGAGCCCCAAAAG
TCCCAAATCTCCGACAAGTGTCTTTGTTGTGTACAGCCCGCGGGCGAAGG
AGATGGGTCTGGACGACTTTGACGTAATTCAAACCCTGGGCAAGGGGGCG
TTCGCCCGTGTGGACAAGGTGAAGCGGAAGGTAGACGCAAAAATATATGC
CTTGAAGCGCGTCGACATCTCGAATATCCCACCCAAGGACCTCGAAGACT
CGTTGAATGAGATCCGCATTCTCGCCTCGTTCAAGCATCCCCGGCTTATT
CGGTGGTACGAGACGTTCGTTGAGTCCGAGTTACAAGAATTGTGCATCGT
CATGGAGCTATGCCCATATGGGGACTTGGAGCAGAAGATCAAGCGGCATC
AGCACCGGAAGGAGTACATTGACGAAAGGGAAATATGGGTCTACTCAGTC
AACCTTCTCGAAGGCCTCGCCGCCCTGCATGCCAAGGGCGTGTGTCACCG
TGACCTCAAGCCAGCTAATTGCCTAATAGACAAACACGGCTGCATCAAGA
TCGCAGACATGAACATCTCCAAGGTGTCCAAGGGGGGGAATGGAGGGATG
ATGCAGACCCAGGTTGGCACGCCATACTTCATCTGTCCCGAGATTTACCT
CAAGAAGCCTTACTCATCCATGTCAGACATGTGGTCCTTGGGAGGCGTGC
TGTACAATCTAGCGGCATTGCACCCTCCTTTTTTGGCGGACAACATCCAA
AACCTCCGCAAGGTTGTCGTCCGTGGGGCCTACGACCCCCTACCCAACGT
CTATGGCACGAGCCTCGCCGCTCTAATCGGCCGCCTGCTTCAAATCAATC
CCAGCGATCGTCCTGAAGCCAAAGACATCTTGAAAGACCCTTTGGTTGAA
CGCCACAAGTACCTCCTCCTCCACCCCCTCCCCGTCGGGTCTGAGGAGGC
GGAGGGCGAAATGCTTCCCACCATTCGTGTCGCCTCTGATAAGGGAGGCG
TGAAGACCATTACGCTCCCAGGGCCCGCGTATGAGGAGGAGGGAGGGAAT
GAGGGAGGGGTAGGGAGCCCCAAAAGTCCCAAATCTCCGACAAGTGTCTT
TGTTGTGTACAGCCCGCGGGCGAAGGAGATGGGTCTGGACGACTTTGACG
TAATTCAAACCCTGGGCAAGGGGGCGTTCGCCCGTGTGGACAAGGTGAAG
CGGAAGGTAGACGCAAAAATATATGCCTTGAAGCGCGTCGACATCTCGAA
TATCCCACCCAAGGACCTCGAAGACTCGTTGAATGAGATCCGCATTCTCG
CCTCGTTCAAGCATCCCCGGCTTATTCGGTGGTACGAGACGTTCGTTGAG
TCCGAGTTACAAGAATTGTGCATCGTCATGGAGCTATGCCCATATGGGGA
CTTGGAGCAGAAGATCAAGCGGCATCAGCACCGGAAGGAGTACATTGACG
AAAGGGAAATATGGGTCTACTCAGTCAACCTTCTCGAAGGCCTCGCCGCC
CTGCATGCCAAGGGCGTGTGTCACCGTGACCTCAAGCCAGCTAATTGCCT
AATAGACAAACACGGCTGCATCAAGATCGCAGACATGAACATCTCCAAGG
TGTCCAAGGGGGGGAATGGAGGGATGATGCAGACCCAGGTTGGCACGCCA
TACTTCATCTGTCCCGAGATTTACCTCAAGAAGCCTTACTCATCCATGTC
AGACATGTGGTCCTTGGGAGGCGTGCTGTACAATCTAGCGGCATTGCACC
CTCCTTTTTTGGCGGACAACATCCAAAACCTCCGCAAGGTTGTCGTCCGT
GGGGCCTACGACCCCCTACCCAACGTCTATGGCACGAGCCTCGCCGCTCT
AATCGGCCGCCTGCTTCAAATCAATCCCAGCGATCGTCCTGAAGCCAAAG
ACATCTTGAAAGACCCTTTGGTTGAACGCCACAAGTACCTCCTCCTCCAC
CCCCTCCCCGTCGGGTCTGAGGAGGCGGAGGGCGAAATGCTTCCCACCAT
TCGTGTCGCCTCTGATAAGGGAGGCGTGAAGACCATTACGCTCCCAGGGC
CCGCGTATGAGGAGGAGGGAGGGAATGAGGGAGGGGTAGGGAGCCCCAAA
AGTCCCAAATCTCCGACAAGTGTCTTTGTTGTGTACAGCCCGCGGGCGAA
GGAGATGGGTCTGGACGACTTTGACGTAATTCAAACCCTGGGCAAGGGGG
CGTTCGCCCGTGTGGACAAGGTGAAGCGGAAGGTAGACGCAAAAATATAT
GCCTTGAAGCGCGTCGACATCTCGAATATCCCACCCAAGGACCTCGAAGA
CTCGTTGAATGAGATCCGCATTCTCGCCTCGTTCAAGCATCCCCGGCTTA
TTCGGTGGTACGAGACGTTCGTTGAGTCCGAGTTACAAGAATTGTGCATC
GTCATGGAGCTATGCCCATATGGGGACTTGGAGCAGAAGATCAAGCGGCA
TCAGCACCGGAAGGAGTACATTGACGAAAGGGAAATATGGGTCTACTCAG
TCAACCTTCTCGAAGGCCTCGCCGCCCTGCATGCCAAGGGCGTGTGTCAC
CGTGACCTCAAGCCAGCTAATTGCCTAATAGACAAACACGGCTGCATCAA
GATCGCAGACATGAACATCTCCAAGGTGTCCAAGGGGGGGAATGGAGGGA
TGATGCAGACCCAGGTTGGCACGCCATACTTCATCTGTCCCGAGATTTAC
CTCAAGAAGCCTTACTCATCCATGTCAGACATGTGGTCCTTGGGAGGCGT
GCTGTACAATCTAGCGGCATTGCACCCTCCTTTTTTGGCGGACAACATCC
AAAACCTCCGCAAGGTTGTCGTCCGTGGGGCCTACGACCCCCTACCCAAC
GTCTATGGCACGAGCCTCGCCGCTCTAATCGGCCGCCTGCTTCAAATCAA
TCCCAGCGATCGTCCTGAAGCCAAAGACATCTTGAAAGACCCTTTGGTTG
AACGCCACAAGTACCTCCTCCTCCACCCCCTCCCCGTCGGGTCTGAGGAG
GCGGAGGGCGAAATGCTTCCCACCATTCGTGTCGCCTCTGATAAGGGAGG
CGTGAAGACCATTACGCTCCCAGGGCCCGCGTATGAGGAGGAGGGAGGGA
ATGAGGGAGGGGTAGGGAGCCCCAAAAGTCCCAAATCTCCGACAAGTGTC
TTTGTTGTGTACAGCCCGCGGGCGAAGGAG

Synonyms

Publications