jgi.p|Nanoce1779_2|602527, mRNA_8111 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602527
Unique Name	mRNA_8111
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	929
Alignment location	scaffold_25:185873..186801 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602613
Track	FilteredModels2
ProteinId	602527

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:185873..186801 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602527	gene_8111	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602527	mRNA_8111-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8111	CDS_8111	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:185873..186801+
coding sequence from alignment at scaffold_25:185873..186801+

mRNA sequence

>mRNA_8111 ID=mRNA_8111|Name=jgi.p|Nanoce1779_2|602527|organism=Nannochloropsis oceanica|type=mRNA|length=929bp
AGATAAAGACAGGGGTGCATTTGCACTGACTTGATTGTCCGGCTGTGGGC
CGTGGAGGATGCCACAATCCAACCTTTTTTCGATCACCCGCAGCACCATC
ATCGCCCTTACTACCATTATGTCCGCCATCCTGACTACGCTGGCCAGGGC
TGGCCTCAGCAGCCTAACCACAGCAGTTTCCAGAACAACAACAACAACAA
CGACAACAAGAGGAGGGTGGTACGTAGGGCGTCTTATTCCCACCGTCCAA
GCTTTTGCCCCTCCCGCCTCCAGCCGTTCCTTCCGCCTGACCCCTCGCTG
CGACATGCCCCGCAGCGGGCTGACCATTCCCCATGATCGCCTCGACTTCA
GCTACTCCAAGTCATCGGGCCCGGGTGGACAGAATGTCAATAAACTTAAC
ACACGGGTGGAATTGCGTTTCCATGTGGAGAGTGCTGAATGGATACCGCA
GGGCATGCGCGGGCGGCTTTTGGAGCAGCAGCGGCATCGAGTCAACAAGG
CGGGGGAGCTGGTACTATCCTCGCAGGAGCATCGGACACAGCTTAAGAAT
CGTGAAGATTGCCTATCAAAGTTAGAGGAGGCATTGGCTCGGGCGGCGAT
TGTGCCCAAGACGAGGAATATGCGAGTTGGATTGCAGGAATGGGAGAAGG
AAAACAGGTTGCGGGAGAAGAAAAAGAGGTCTGAAACGAAGAGCGCGCGG
AGGCAGAATAGAAAGTGGGATGAGTAGAAAGACAACTGCACACTGGTGAG
TAGGTTAACATTCAGTGGAGCAGTCACTGGACGGGGGATAGTAAGAAGAG
GAGGGTAGGGAAGAAGAAAGGGCTTTGTACAGTGCTGTATGTGTAGTAAA
TTTGTGTCCTAGGGGAAAAGAGGAACTTTCACGACAGGTGGTATGACAAA
GAAGAAGAGGGCCGTCTCTCTCGCTTTAA

protein sequence of jgi.p|Nanoce1779_2|602527

>mRNA_8111-protein ID=mRNA_8111-protein|Name=jgi.p|Nanoce1779_2|602527|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MSAILTTLARAGLSSLTTAVSRTTTTTTTTRGGWYVGRLIPTVQAFAPPA
SSRSFRLTPRCDMPRSGLTIPHDRLDFSYSKSSGPGGQNVNKLNTRVELR
FHVESAEWIPQGMRGRLLEQQRHRVNKAGELVLSSQEHRTQLKNREDCLS
KLEEALARAAIVPKTRNMRVGLQEWEKENRLREKKKRSETKSARRQNRKW
DE*

mRNA from alignment at scaffold_25:185873..186801+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8111 ID=mRNA_8111|Name=jgi.p|Nanoce1779_2|602527|organism=Nannochloropsis oceanica|type=mRNA|length=929bp|location=Sequence derived from alignment at scaffold_25:185873..186801+ (Nannochloropsis oceanica)
AGATAAAGACAGGGGTGCATTTGCACTGACTTGATTGTCCGGCTGTGGGC
CGTGGAGGATGCCACAATCCAACCTTTTTTCGATCACCCGCAGCACCATC
ATCGCCCTTACTACCATTATGTCCGCCATCCTGACTACGCTGGCCAGGGC
TGGCCTCAGCAGCCTAACCACAGCAGTTTCCAGAACAACAACAACAACAA
CGACAACAAGAGGAGGGTGGTACGTAGGGCGTCTTATTCCCACCGTCCAA
GCTTTTGCCCCTCCCGCCTCCAGCCGTTCCTTCCGCCTGACCCCTCGCTG
CGACATGCCCCGCAGCGGGCTGACCATTCCCCATGATCGCCTCGACTTCA
GCTACTCCAAGTCATCGGGCCCGGGTGGACAGAATGTCAATAAACTTAAC
ACACGGGTGGAATTGCGTTTCCATGTGGAGAGTGCTGAATGGATACCGCA
GGGCATGCGCGGGCGGCTTTTGGAGCAGCAGCGGCATCGAGTCAACAAGG
CGGGGGAGCTGGTACTATCCTCGCAGGAGCATCGGACACAGCTTAAGAAT
CGTGAAGATTGCCTATCAAAGTTAGAGGAGGCATTGGCTCGGGCGGCGAT
TGTGCCCAAGACGAGGAATATGCGAGTTGGATTGCAGGAATGGGAGAAGG
AAAACAGGTTGCGGGAGAAGAAAAAGAGGTCTGAAACGAAGAGCGCGCGG
AGGCAGAATAGAAAGTGGGATGAGTAGAAAGACAACTGCACACTGGTGAG
TAGGTTAACATTCAGTGGAGCAGTCACTGGACGGGGGATAGTAAGAAGAG
GAGGGTAGGGAAGAAGAAAGGGCTTTGTACAGTGCTGTATGTGTAGTAAA
TTTGTGTCCTAGGGGAAAAGAGGAACTTTCACGACAGGTGGTATGACAAA
GAAGAAGAGGGCCGTCTCTCTCGCTTTAA

Coding sequence (CDS) from alignment at scaffold_25:185873..186801+

>mRNA_8111 ID=mRNA_8111|Name=jgi.p|Nanoce1779_2|602527|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_25:185873..186801+ (Nannochloropsis oceanica)
ATGTCCGCCATCCTGACTACGCTGGCCAGGGCTGGCCTCAGCAGCCTAAC
CACAGCAGTTTCCAGAACAACAACAACAACAACGACAACAAGAGGAGGGT
GGTACGTAGGGCGTCTTATTCCCACCGTCCAAGCTTTTGCCCCTCCCGCC
TCCAGCCGTTCCTTCCGCCTGACCCCTCGCTGCGACATGCCCCGCAGCGG
GCTGACCATTCCCCATGATCGCCTCGACTTCAGCTACTCCAAGTCATCGG
GCCCGGGTGGACAGAATGTCAATAAACTTAACACACGGGTGGAATTGCGT
TTCCATGTGGAGAGTGCTGAATGGATACCGCAGGGCATGCGCGGGCGGCT
TTTGGAGCAGCAGCGGCATCGAGTCAACAAGGCGGGGGAGCTGGTACTAT
CCTCGCAGGAGCATCGGACACAGCTTAAGAATCGTGAAGATTGCCTATCA
AAGTTAGAGGAGGCATTGGCTCGGGCGGCGATTGTGCCCAAGACGAGGAA
TATGCGAGTTGGATTGCAGGAATGGGAGAAGGAAAACAGGTTGCGGGAGA
AGAAAAAGAGGTCTGAAACGAAGAGCGCGCGGAGGCAGAATAGAAAGTGG
GATGAGTAG

Synonyms

Publications