jgi.p|Nanoce1779_2|602578, mRNA_8126 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602578
Unique NamemRNA_8126
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1287
Alignment locationscaffold_25:225428..227000 -

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Properties
Property NameValue
TranscriptId602664
TrackFilteredModels2
ProteinId602578
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:225428..227000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602578gene_8126Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602578mRNA_8126-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8126CDS_8126Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8126 ID=mRNA_8126|Name=jgi.p|Nanoce1779_2|602578|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp
ACAGGCAATGCCATCCCTCCCTAAAACCGCGGTAATTGGCGGGGGCGCGT
TACTTTGGCTGCTGATCTCGTGCTATGCTGTGCTTCAATCACTCGACGCG
AACCGACAGCTAACAGACACGCGAAAGAGGCTCAAGAAGGAGCAAGAGCT
GAGAAAAATGGAGCGCACAGGGCGCACGAAGGCGGAGCGACGTCTACGTC
TGGAATTGAAGGCATTAATCAGGGGTCAGACAGACGGTGGGGTCAATTTG
AAGCCTGTGGCACGCATGCAGTCGCCCTTCAAAGGCCGGTGCGGCACTCC
GCGGCAGGGTCTCCTCGCACCCAATGCCAAGGGTCAGATTAAACTCGAAC
CTGGAGTCTGCCGGACGTCCCTGGACCAGCTAGACAAATTTACGCACCTC
TGGGTCATTTTTCTCTTTGACCAAAATACAAACTGGACCGATGCCCTGTG
TTCCGACAGCCAACGCTTCACCTATACCGCTAAGATCGCACCCCCGCGGC
TGTTCGGAAAGCGGGTGGGTGTCTTTAGTACTCGCAGCCCACATCGGCCA
AACCCGATCGGCCTCAGCGTGGTGGCTATTGACTCAGTGGATGAAGAGGG
CGGCATCATCCACGTGTCAGGAGTGGACTTGACCGATGGCACGCCCATCC
TGGACCTGAAGCCCTACATCCCCTACGACTTAGTTTTGGATCATCAGGTT
CCAAGCTGGGTCATGGCCGACGATGTGCCAGCGTGGCAACTTCGGATTGC
ACCTGAGGCAGAGATCGCGCTCTCGGAGCTGGCGATGGAGCGGAACTCAC
CCTTCTACTCTACTTACGAGGACCTGGTGGCCCTCTTGAGGGACGTGCTG
CTGCAGGACGTGCGCAGCATTCACAAGGGTCGCGGCACGACGGTCAAGGC
TGGCAACGGCACCAAATCAGGAAATGAGGCCCCCGAGTCCTTCACCTGCA
ATATCGATGACATCGCCATAGAATTTGTAGCCTTAAAAGACGCCATTCAC
ATTCTGCGCTGTTTCGAGGAGTGCCGCGACGCGCTGGATCCAGAGCCAGC
AGACGACGCGGTGGTAGCTGCCGAGGGGACAGGTACATTGCAACGAAAAG
ATAAAGCCGTCAGCAAACGGGCTGCTTCCACTACTTCGTCGTGCTTGGAA
TAAACGGAGGTGCAATGAGGAAAAGCCTTGATATGAATGACTGATGACCA
CACACAAAGCAAACGAAATGTCTACAGTATAGCAAATTAAAAAAAGTTAA
TCCACGTTTTATTGCATGAAAAGGTCTGTGAAGAGCG
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protein sequence of jgi.p|Nanoce1779_2|602578

>mRNA_8126-protein ID=mRNA_8126-protein|Name=jgi.p|Nanoce1779_2|602578|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MPSLPKTAVIGGGALLWLLISCYAVLQSLDANRQLTDTRKRLKKEQELRK
MERTGRTKAERRLRLELKALIRGQTDGGVNLKPVARMQSPFKGRCGTPRQ
GLLAPNAKGQIKLEPGVCRTSLDQLDKFTHLWVIFLFDQNTNWTDALCSD
SQRFTYTAKIAPPRLFGKRVGVFSTRSPHRPNPIGLSVVAIDSVDEEGGI
IHVSGVDLTDGTPILDLKPYIPYDLVLDHQVPSWVMADDVPAWQLRIAPE
AEIALSELAMERNSPFYSTYEDLVALLRDVLLQDVRSIHKGRGTTVKAGN
GTKSGNEAPESFTCNIDDIAIEFVALKDAIHILRCFEECRDALDPEPADD
AVVAAEGTGTLQRKDKAVSKRAASTTSSCLE*
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mRNA from alignment at scaffold_25:225428..227000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8126 ID=mRNA_8126|Name=jgi.p|Nanoce1779_2|602578|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp|location=Sequence derived from alignment at scaffold_25:225428..227000- (Nannochloropsis oceanica)
ACAGGCAATGCCATCCCTCCCTAAAACCGCGGTAATTGGCGGGGGCGCGT
TACTTTGGCTGCTGATCTCGTGCTATGCTGTGCTTCAATCACTCGACGCG
AACCGACAGCTAACAGACACGCGAAAGAGGCTCAAGAAGGAGCAAGAGCT
GAGAAAAATGGAGCGCACAGGGCGCACGAAGGCGGAGCGACGTCTACGTC
TGGAATTGAAGGCATTAATCAGGGGTCAGACAGACGGTGGGGTCAATTTG
AAGCCTGTGGCACGCATGCAGTCGCCCTTCAAAGGCCGGTGCGGCACTCC
GCGGCAGGGTCTCCTCGCACCCAATGCCAAGTACGTCGTTTAAAGAGAAC
AAGGAACGTGTGCGTGCGTGTATGTACATGATACCTTCAGGGAAGTGAGA
GGGACTTCCATCACCATCTCGTGAGCACGTGGCCGCTGCTGCTGCTGCTA
GTCGCCTTGTTATCCAATCTTCCCCGTCTGATTCCTCTCGGAGGCCAAAG
ATGGTAGATATACTTTTCCTACTGTGGACTCAACATTAGGCATAGGTATT
TGAAAGTTTCCATACCGATATCCTTTCTTCTATTTCTCTTACAATTCTTC
CTTCAATCATAATCAGGGGTCAGATTAAACTCGAACCTGGAGTCTGCCGG
ACGTCCCTGGACCAGCTAGACAAATTTACGCACCTCTGGGTCATTTTTCT
CTTTGACCAAAATACAAACTGGACCGATGCCCTGTGTTCCGACAGCCAAC
GCTTCACCTATACCGCTAAGATCGCACCCCCGCGGCTGTTCGGAAAGCGG
GTGGGTGTCTTTAGTACTCGCAGCCCACATCGGCCAAACCCGATCGGCCT
CAGCGTGGTGGCTATTGACTCAGTGGATGAAGAGGGCGGCATCATCCACG
TGTCAGGAGTGGACTTGACCGATGGCACGCCCATCCTGGACCTGAAGCCC
TACATCCCCTACGACTTAGTTTTGGATCATCAGGTTCCAAGCTGGGTCAT
GGCCGACGATGTGCCAGCGTGGCAACTTCGGATTGCACCTGAGGCAGAGA
TCGCGCTCTCGGAGCTGGCGATGGAGCGGAACTCACCCTTCTACTCTACT
TACGAGGACCTGGTGGCCCTCTTGAGGGACGTGCTGCTGCAGGACGTGCG
CAGCATTCACAAGGGTCGCGGCACGACGGTCAAGGCTGGCAACGGCACCA
AATCAGGAAATGAGGCCCCCGAGTCCTTCACCTGCAATATCGATGACATC
GCCATAGAATTTGTAGCCTTAAAAGACGCCATTCACATTCTGCGCTGTTT
CGAGGAGTGCCGCGACGCGCTGGATCCAGAGCCAGCAGACGACGCGGTGG
TAGCTGCCGAGGGGACAGGTACATTGCAACGAAAAGATAAAGCCGTCAGC
AAACGGGCTGCTTCCACTACTTCGTCGTGCTTGGAATAAACGGAGGTGCA
ATGAGGAAAAGCCTTGATATGAATGACTGATGACCACACACAAAGCAAAC
GAAATGTCTACAGTATAGCAAATTAAAAAAAGTTAATCCACGTTTTATTG
CATGAAAAGGTCTGTGAAGAGCG
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Coding sequence (CDS) from alignment at scaffold_25:225428..227000-

>mRNA_8126 ID=mRNA_8126|Name=jgi.p|Nanoce1779_2|602578|organism=Nannochloropsis oceanica|type=CDS|length=2292bp|location=Sequence derived from alignment at scaffold_25:225428..227000- (Nannochloropsis oceanica)
GGGTCAGATTAAACTCGAACCTGGAGTCTGCCGGACGTCCCTGGACCAGC
TAGACAAATTTACGCACCTCTGGGTCATTTTTCTCTTTGACCAAAATACA
AACTGGACCGATGCCCTGTGTTCCGACAGCCAACGCTTCACCTATACCGC
TAAGATCGCACCCCCGCGGCTGTTCGGAAAGCGGGTGGGTGTCTTTAGTA
CTCGCAGCCCACATCGGCCAAACCCGATCGGCCTCAGCGTGGTGGCTATT
GACTCAGTGGATGAAGAGGGCGGCATCATCCACGTGTCAGGAGTGGACTT
GACCGATGGCACGCCCATCCTGGACCTGAAGCCCTACATCCCCTACGACT
TAGTTTTGGATCATCAGGTTCCAAGCTGGGTCATGGCCGACGATGTGCCA
GCGTGGCAACTTCGGATTGCACCTGAGGCAGAGATCGCGCTCTCGGAGCT
GGCGATGGAGCGGAACTCACCCTTCTACTCTACTTACGAGGACCTGGTGG
CCCTCTTGAGGGACGTGCTGCTGCAGGACGTGCGCAGCATTCACAAGGGT
CGCGGCACGACGGTCAAGGCTGGCAACGGCACCAAATCAGGAAATGAGGC
CCCCGAGTCCTTCACCTGCAATATCGATGACATCGCCATAGAATTTGTAG
CCTTAAAAGACGCCATTCACATTCTGCGCTGTTTCGAGGAGTGCCGCGAC
GCGCTGGATCCAGAGCCAGCAGACGACGCGGTGGTAGCTGCCGAGGGGAC
AGGTACATTGCAACGAAAAGATAAAGCCGTCAGCAAACGGGCTGCTTCCA
CTACTTCGTCGTGCTTGGAATAAATGCCATCCCTCCCTAAAACCGCGGTA
ATTGGCGGGGGCGCGTTACTTTGGCTGCTGATCTCGTGCTATGCTGTGCT
TCAATCACTCGACGCGAACCGACAGCTAACAGACACGCGAAAGAGGCTCA
AGAAGGAGCAAGAGCTGAGAAAAATGGAGCGCACAGGGCGCACGAAGGCG
GAGCGACGTCTACGTCTGGAATTGAAGGCATTAATCAGGGGTCAGACAGA
CGGTGGGGTCAATTTGAAGCCTGTGGCACGCATGCAGTCGCCCTTCAAAG
GCCGGTGCGGCACTCCGCGGCAGGGTCTCCTCGCACCCAATGCCAAGGGT
CAGATTAAACTCGAACCTGGAGTCTGCCGGACGTCCCTGGACCAGCTAGA
CAAATTTACGCACCTCTGGGTCATTTTTCTCTTTGACCAAAATACAAACT
GGACCGATGCCCTGTGTTCCGACAGCCAACGCTTCACCTATACCGCTAAG
ATCGCACCCCCGCGGCTGTTCGGAAAGCGGGTGGGTGTCTTTAGTACTCG
CAGCCCACATCGGCCAAACCCGATCGGCCTCAGCGTGGTGGCTATTGACT
CAGTGGATGAAGAGGGCGGCATCATCCACGTGTCAGGAGTGGACTTGACC
GATGGCACGCCCATCCTGGACCTGAAGCCCTACATCCCCTACGACTTAGT
TTTGGATCATCAGGTTCCAAGCTGGGTCATGGCCGACGATGTGCCAGCGT
GGCAACTTCGGATTGCACCTGAGGCAGAGATCGCGCTCTCGGAGCTGGCG
ATGGAGCGGAACTCACCCTTCTACTCTACTTACGAGGACCTGGTGGCCCT
CTTGAGGGACGTGCTGCTGCAGGACGTGCGCAGCATTCACAAGGGTCGCG
GCACGACGGTCAAGGCTGGCAACGGCACCAAATCAGGAAATGAGGCCCCC
GAGTCCTTCACCTGCAATATCGATGACATCGCCATAGAATTTGTAGCCTT
AAAAGACGCCATTCACATTCTGCGCTGTTTCGAGGAGTGCCGCGACGCGC
TGGATCCAGAGCCAGCAGACGACGCGGTGGTAGCTGCCGAGGGGACAGGT
ACATTGCAACGAAAAGATAAAGCCGTCAGCAAACGGGCTGCTTCCACTAC
TTCGTCGTGCTTGGAATAAATGCCATCCCTCCCTAAAACCGCGGTAATTG
GCGGGGGCGCGTTACTTTGGCTGCTGATCTCGTGCTATGCTGTGCTTCAA
TCACTCGACGCGAACCGACAGCTAACAGACACGCGAAAGAGGCTCAAGAA
GGAGCAAGAGCTGAGAAAAATGGAGCGCACAGGGCGCACGAAGGCGGAGC
GACGTCTACGTCTGGAATTGAAGGCATTAATCAGGGGTCAGACAGACGGT
GGGGTCAATTTGAAGCCTGTGGCACGCATGCAGTCGCCCTTCAAAGGCCG
GTGCGGCACTCCGCGGCAGGGTCTCCTCGCACCCAATGCCAA
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Synonyms
Publications