jgi.p|Nanoce1779_2|604094, mRNA_8808 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604094
Unique NamemRNA_8808
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length994
Alignment locationscaffold_28:213989..215184 -

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Properties
Property NameValue
TranscriptId604180
TrackFilteredModels2
ProteinId604094
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:213989..215184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604094gene_8808Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604094mRNA_8808-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8808CDS_8808Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8808 ID=mRNA_8808|Name=jgi.p|Nanoce1779_2|604094|organism=Nannochloropsis oceanica|type=mRNA|length=994bp
CAGCACCGCCCGCCTCGACTGCGAATTCCCGGGAACCATGAGGACCCCTC
CCTCCCCCCCTCCCTCCCGCCCGCTCTGTGCCTCCACTCCTGGCCGATCT
ACAAAAACCCCGAGGAGAACGGGATTCGTGGCCAGTCGGGATGGATCGAC
GGACTTCAACAAGAACGAAAACGGACAGGAGTAAACCACAGGCAACGCTC
TCTCCGCCACCTTGTCCCCTTCCCTCCCTCTCTCCCTGCCTGCTTCTTCC
TTCCCCCCCTCCTCCTCCCTCCCCTTCTTTCCGCCTTCCTCCTCAAGTGG
AGACAAAGCCGTGCCTTCGCTACTTGCAGTGGCGGTCGCGGCGTCTGGCT
CCGAATCGGGAAGAGGGCGAGGGAGGTCAAAGCGGGGATAGAGTGGCTCG
AGGTGCATGCTTACTACCTCCCAAAAGCCCTGCTTCTGTTGTCCCAGCCC
AAACATTCGCCTTTCCTTCACACCCATCCACACATTCTCAGCCCAGGACA
CGGGCTCATGGCGCCCCTCCAAGCCTTGGGGGGCGTCGGACTTTTGCTGG
GAGGAGAGGAAGGAGGAAAGGAGGGAAGAAAGGTGGGAGGCGTTAGACGA
GGTGGTATTCCGGCCATTTGTATTTCCCATTCCCATCCTTGCATCAACGT
ACATCGGTATAGTTGTAGACTATGGTGGCCTGGATGGGAACGTCCACATT
ATTAACCAGGACGAACATTTGAAGGTGGCCTGGAGGGAGGATTGGGGCCG
GCGTGTACGACGAGGGGATGGAGGAGCGAATAGAGGAGGAGGAGGAATCG
CTTGTCTCTTGTTGTTGATCGGCCATGGTGCTGAGGATCGTGGAAGCCAG
GGAAAGGAGCAGGAAGAGGAGGTAGAGGGGGGACAGTGTCGTAGCCATGT
CGCCTCGTGCAGACCTATCGCGATGTTCGGCTCTGCTGGGATCTGAGATA
CGCCGGAGATGGGGGAGCTGTTAAAGACCAGGCGGGGTGATCTG
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protein sequence of jgi.p|Nanoce1779_2|604094

>mRNA_8808-protein ID=mRNA_8808-protein|Name=jgi.p|Nanoce1779_2|604094|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MLTTSQKPCFCCPSPNIRLSFTPIHTFSAQDTGSWRPSKPWGASDFCWEE
RKEERREERWEALDEVVFRPFVFPIPILASTYIGIVVDYGGLDGNVHIIN
QDEHLKVAWREDWGRRVRRGDGGANRGGGGIACLLLLIGHGAEDRGSQGK
EQEEEVEGGQCRSHVASCRPIAMFGSAGI*
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mRNA from alignment at scaffold_28:213989..215184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8808 ID=mRNA_8808|Name=jgi.p|Nanoce1779_2|604094|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp|location=Sequence derived from alignment at scaffold_28:213989..215184- (Nannochloropsis oceanica)
CAGCACCGCCCGCCTCGACTGCGAATTCCCGGGAACCATGAGGACCCCTC
CCTCCCCCCCTCCCTCCCGCCCGCTCTGTGCCTCCACTCCTGGCCGATCT
ACAAAAACCCCGAGGAGAACGGGATTCGTGGCCAGTCGGGATGGATCGAC
GGACTTCAACAAGAACGAAAACGGACAGGAGTAAACCACAGGCAACGCTC
TCTCCGCCACCTTGTCCCCTTCCCTCCCTCTCTCCCTGCCTGCTTCTTCC
TTCCCCCCCTCCTCCTCCCTCCCCTTCTTTCCGCCTTCCTCCTCAAGTGG
AGACAAAGCCGTGCCTTCGCTACTTGCAGTGGCGGTCGCGGCGTCTGGCT
CCGAATCGGGAAGAGGGCGAGGGAGGTCAAAGCGGGGATAGAGTGGCTCG
AGGTGCATGCTTACTACCTCCCAAAAGCCCTGCCTGGAGGAGGGGGCGAT
GGGAGGGAGGAAGGGAGAGAGAATGAAAAGGGATGTGAGGACTTTGAAGG
CTTATTCCTCCATGAAGGGGTCGTGGGTGGCAGGATACTTCTCCTGGGTG
GCATGATGCTTCTGTTTTTCATCAAAAATCGAGAGCGCCATCCCTTCCCC
CTTCCTCCCTCCCTTCCTCCTAATTTTAGACTCACTTCTGTTGTCCCAGC
CCAAACATTCGCCTTTCCTTCACACCCATCCACACATTCTCAGCCCAGGA
CACGGGCTCATGGCGCCCCTCCAAGCCTTGGGGGGCGTCGGACTTTTGCT
GGGAGGAGAGGAAGGAGGAAAGGAGGGAAGAAAGGTGGGAGGCGTTAGAC
GAGGTGGTATTCCGGCCATTTGTATTTCCCATTCCCATCCTTGCATCAAC
GTACATCGGTATAGTTGTAGACTATGGTGGCCTGGATGGGAACGTCCACA
TTATTAACCAGGACGAACATTTGAAGGTGGCCTGGAGGGAGGATTGGGGC
CGGCGTGTACGACGAGGGGATGGAGGAGCGAATAGAGGAGGAGGAGGAAT
CGCTTGTCTCTTGTTGTTGATCGGCCATGGTGCTGAGGATCGTGGAAGCC
AGGGAAAGGAGCAGGAAGAGGAGGTAGAGGGGGGACAGTGTCGTAGCCAT
GTCGCCTCGTGCAGACCTATCGCGATGTTCGGCTCTGCTGGGATCTGAGA
TACGCCGGAGATGGGGGAGCTGTTAAAGACCAGGCGGGGTGATCTG
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Coding sequence (CDS) from alignment at scaffold_28:213989..215184-

>mRNA_8808 ID=mRNA_8808|Name=jgi.p|Nanoce1779_2|604094|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_28:213989..215184- (Nannochloropsis oceanica)
TTCTGTTGTCCCAGCCCAAACATTCGCCTTTCCTTCACACCCATCCACAC
ATTCTCAGCCCAGGACACGGGCTCATGGCGCCCCTCCAAGCCTTGGGGGG
CGTCGGACTTTTGCTGGGAGGAGAGGAAGGAGGAAAGGAGGGAAGAAAGG
TGGGAGGCGTTAGACGAGGTGGTATTCCGGCCATTTGTATTTCCCATTCC
CATCCTTGCATCAACGTACATCGGTATAGTTGTAGACTATGGTGGCCTGG
ATGGGAACGTCCACATTATTAACCAGGACGAACATTTGAAGGTGGCCTGG
AGGGAGGATTGGGGCCGGCGTGTACGACGAGGGGATGGAGGAGCGAATAG
AGGAGGAGGAGGAATCGCTTGTCTCTTGTTGTTGATCGGCCATGGTGCTG
AGGATCGTGGAAGCCAGGGAAAGGAGCAGGAAGAGGAGGTAGAGGGGGGA
CAGTGTCGTAGCCATGTCGCCTCGTGCAGACCTATCGCGATGTTCGGCTC
TGCTGGGATCTGAATGCTTACTACCTCCCAAAAGCCCTGCTTCTGTTGTC
CCAGCCCAAACATTCGCCTTTCCTTCACACCCATCCACACATTCTCAGCC
CAGGACACGGGCTCATGGCGCCCCTCCAAGCCTTGGGGGGCGTCGGACTT
TTGCTGGGAGGAGAGGAAGGAGGAAAGGAGGGAAGAAAGGTGGGAGGCGT
TAGACGAGGTGGTATTCCGGCCATTTGTATTTCCCATTCCCATCCTTGCA
TCAACGTACATCGGTATAGTTGTAGACTATGGTGGCCTGGATGGGAACGT
CCACATTATTAACCAGGACGAACATTTGAAGGTGGCCTGGAGGGAGGATT
GGGGCCGGCGTGTACGACGAGGGGATGGAGGAGCGAATAGAGGAGGAGGA
GGAATCGCTTGTCTCTTGTTGTTGATCGGCCATGGTGCTGAGGATCGTGG
AAGCCAGGGAAAGGAGCAGGAAGAGGAGGTAGAGGGGGGACAGTGTCGTA
GCCATGTCGCCTCGTGCAGACCTATCGCGATGTTCGGCTCTGCTGGGATC
TGAATGCTTACTACCTCCCAAAAGCCCTGC
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Synonyms
Publications