jgi.p|Nanoce1779_2|238167, mRNA_378 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|238167
Unique NamemRNA_378
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2036
Alignment locationscaffold_3:939976..942011 -

Link to JBrowse

Properties
Property NameValue
TranscriptId238253
TrackFilteredModels2
ProteinId238167
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:939976..942011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|238167gene_378Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|238167mRNA_378-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_378CDS_378Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_378 ID=mRNA_378|Name=jgi.p|Nanoce1779_2|238167|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp
TCCATTAGCGCGAGTACGGCCTCGCCGACCAAGAATTGGAGGTTGGGACA
AAGTCCCCAGCCATTTCGCGGGAAGAAAAGCATGGAGAAAGCCACGAAGG
TGCCAAGGATTGTAAAACTCAGCTCGACATAGAGGTCACACGTTTCTCTA
ATCTGGCCGATGACATGGATGATGACGATGGTCTTCCCCGCGGCTTCGTC
GCAGGCACAATCATCACTCATCCACCTCCATCCTGCGCTAGCAGCAAATG
CAACAGCTCCAGAAATCACCCGCCACCACTTTTTCAATCTTCTTCGGTCT
GTAATAATTCTCTCTCCATACCGCACACGCCCTCCGAAGGCATCTCCACC
AACACGCCCAAGCATATAAGCCCCGCTCCGTCTCCTTCCTCCCACTGCCC
AGCCTCCTCTGTCCCCCCTTCGCCGCACGCCGCAATAGCCAGCTCCGAAT
TCCAACAAAGCATAAGCAGCCTTACTGGACATGTCCGTGAGACTAGCTTT
TCCAAAATGCCCCCCCTGCACCGTTTTCTAACCCGGGGTATCTCCAACAT
AAAAGAACACGTCAGCCATCTCCTCGGTGGAGAGCCCTTGCTGGTTGCTG
TCCGTCGATACATCCGCTTACACAAACAGTTGCTGGGTGAGTACCCACTT
GGTATGCCTCCCCGTCCGAAGAATGAGTATCTCGCGGCGCTGGACCAAAA
ATTTGCGGAATTGCTGGAGCATCACGATCTCTTAATTCTAATTCCTGTCT
TTGTGTTGTGCCCGGTGGTGTTCAGTCAACATTTCTTGCTGGAGATCCCG
GCGTTGTATGGGCTATGGTGGTATCACCCGGAGAGAGTGACGGCCTTGGT
TGACATTCGGAAAGGGACGTTGATGCCGCCCCGCTATACGGTGCTGAAGT
GTGGTTGGCAAGCGCTGTGGGCTCGCATGGTGGAGATTGAAGGGTTGGAC
GTACATTTAAATGCTAAAGTCAAATCTATTCGTCGGCCATGCATGAGTAT
GAAAGGGAAGCTTGTAGTAGAAAAAAAGGGAGGGGGAAGGGGAGGAGAAG
GAGGAGGGGGAAAAGGAGGAGAAGCAGGAGGAGAAGGAGGAGAAAGAGGG
CAGGCAGGTAGAAACGCGGTGGAAACGTACGAGTTTGACTTTATCGTCTT
GGCGGGCAGTATGAAATCTATTTTTCCCCTCCTTCTCGATGCCACGAATG
AGGAACAAGAGCTTGCAGAGGCCGCGACTGAATTCAGTCTGTGCAGCACT
ATTTTTGAAGCGGAGGCCGTGACAGGTGAGCAGCCTGTCAAGCTCTATCC
CTTATCCAAGGGATGCGCTGCCACGGGCCAGGTCTTCGCTCAGATCAATC
CCCGGCTATTTGTACACAGTTCCACGGCAGTAGCTGCAGCGAGCCCTCGA
GACGAGCAGCAGCAAGAGTGGGACGGCGACTACGACGATAAAGACGTCCA
CGGCCAGAGTGGTAGCCGCAGTAACAGCAGCAGTAGCAGCAACTGCGTTG
CCTCTCTGCCTGCGGCCAAAGAACCTCGCATAGTCTATCAGTTCCTTCAT
CGGGCCCCAAATCCAGCTGACTTCGCCGTGCTCACACGGCGACTCAAAAT
GCATTGCGACGATCAGTCATTCCGTGAACTGGTGATGCTCAAGCAGTGTC
TGTGGCGGTTCTTCCCACACTTTCCAAACGAGGATTTGCTCAAAAAAGGG
TGGCTCTGGCGGCTGCAAGAGATGCAAGGGCAGCAAGGCACATTATACTT
GGGAGCGAGTGTGTGTATGGATGCTTTGAATGAGGTTTTGCTTTATAACG
AAGTGGTGCTGGAGCGGATTTTGGGAGATTGAGTTTATCAGGAAGAATGG
AGAGAAGGGTGTAGCTGTGAAGGAAGGCAGGTCTAGTTTGGAAAAAAGTA
TGGGCTCAAATGAAGGAAGTGTACGTGTGCACGCAAGCATATAGGATTAC
GCTGTACTGAACACATTTTGAAGTTGTTGCTATGTTGTGTGAATGTAGAA
GGCAGAAAATTAAATGTAAACCAGCGTCAGAGCTTA
back to top

protein sequence of jgi.p|Nanoce1779_2|238167

>mRNA_378-protein ID=mRNA_378-protein|Name=jgi.p|Nanoce1779_2|238167|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MDDDDGLPRGFVAGTIITHPPPSCASSKCNSSRNHPPPLFQSSSVCNNSL
SIPHTPSEGISTNTPKHISPAPSPSSHCPASSVPPSPHAAIASSEFQQSI
SSLTGHVRETSFSKMPPLHRFLTRGISNIKEHVSHLLGGEPLLVAVRRYI
RLHKQLLGEYPLGMPPRPKNEYLAALDQKFAELLEHHDLLILIPVFVLCP
VVFSQHFLLEIPALYGLWWYHPERVTALVDIRKGTLMPPRYTVLKCGWQA
LWARMVEIEGLDVHLNAKVKSIRRPCMSMKGKLVVEKKGGGRGGEGGGGK
GGEAGGEGGERGQAGRNAVETYEFDFIVLAGSMKSIFPLLLDATNEEQEL
AEAATEFSLCSTIFEAEAVTGEQPVKLYPLSKGCAATGQVFAQINPRLFV
HSSTAVAAASPRDEQQQEWDGDYDDKDVHGQSGSRSNSSSSSNCVASLPA
AKEPRIVYQFLHRAPNPADFAVLTRRLKMHCDDQSFRELVMLKQCLWRFF
PHFPNEDLLKKGWLWRLQEMQGQQGTLYLGASVCMDALNEVLLYNEVVLE
RILGD*
back to top

mRNA from alignment at scaffold_3:939976..942011-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_378 ID=mRNA_378|Name=jgi.p|Nanoce1779_2|238167|organism=Nannochloropsis oceanica|type=mRNA|length=2036bp|location=Sequence derived from alignment at scaffold_3:939976..942011- (Nannochloropsis oceanica)
TCCATTAGCGCGAGTACGGCCTCGCCGACCAAGAATTGGAGGTTGGGACA
AAGTCCCCAGCCATTTCGCGGGAAGAAAAGCATGGAGAAAGCCACGAAGG
TGCCAAGGATTGTAAAACTCAGCTCGACATAGAGGTCACACGTTTCTCTA
ATCTGGCCGATGACATGGATGATGACGATGGTCTTCCCCGCGGCTTCGTC
GCAGGCACAATCATCACTCATCCACCTCCATCCTGCGCTAGCAGCAAATG
CAACAGCTCCAGAAATCACCCGCCACCACTTTTTCAATCTTCTTCGGTCT
GTAATAATTCTCTCTCCATACCGCACACGCCCTCCGAAGGCATCTCCACC
AACACGCCCAAGCATATAAGCCCCGCTCCGTCTCCTTCCTCCCACTGCCC
AGCCTCCTCTGTCCCCCCTTCGCCGCACGCCGCAATAGCCAGCTCCGAAT
TCCAACAAAGCATAAGCAGCCTTACTGGACATGTCCGTGAGACTAGCTTT
TCCAAAATGCCCCCCCTGCACCGTTTTCTAACCCGGGGTATCTCCAACAT
AAAAGAACACGTCAGCCATCTCCTCGGTGGAGAGCCCTTGCTGGTTGCTG
TCCGTCGATACATCCGCTTACACAAACAGTTGCTGGGTGAGTACCCACTT
GGTATGCCTCCCCGTCCGAAGAATGAGTATCTCGCGGCGCTGGACCAAAA
ATTTGCGGAATTGCTGGAGCATCACGATCTCTTAATTCTAATTCCTGTCT
TTGTGTTGTGCCCGGTGGTGTTCAGTCAACATTTCTTGCTGGAGATCCCG
GCGTTGTATGGGCTATGGTGGTATCACCCGGAGAGAGTGACGGCCTTGGT
TGACATTCGGAAAGGGACGTTGATGCCGCCCCGCTATACGGTGCTGAAGT
GTGGTTGGCAAGCGCTGTGGGCTCGCATGGTGGAGATTGAAGGGTTGGAC
GTACATTTAAATGCTAAAGTCAAATCTATTCGTCGGCCATGCATGAGTAT
GAAAGGGAAGCTTGTAGTAGAAAAAAAGGGAGGGGGAAGGGGAGGAGAAG
GAGGAGGGGGAAAAGGAGGAGAAGCAGGAGGAGAAGGAGGAGAAAGAGGG
CAGGCAGGTAGAAACGCGGTGGAAACGTACGAGTTTGACTTTATCGTCTT
GGCGGGCAGTATGAAATCTATTTTTCCCCTCCTTCTCGATGCCACGAATG
AGGAACAAGAGCTTGCAGAGGCCGCGACTGAATTCAGTCTGTGCAGCACT
ATTTTTGAAGCGGAGGCCGTGACAGGTGAGCAGCCTGTCAAGCTCTATCC
CTTATCCAAGGGATGCGCTGCCACGGGCCAGGTCTTCGCTCAGATCAATC
CCCGGCTATTTGTACACAGTTCCACGGCAGTAGCTGCAGCGAGCCCTCGA
GACGAGCAGCAGCAAGAGTGGGACGGCGACTACGACGATAAAGACGTCCA
CGGCCAGAGTGGTAGCCGCAGTAACAGCAGCAGTAGCAGCAACTGCGTTG
CCTCTCTGCCTGCGGCCAAAGAACCTCGCATAGTCTATCAGTTCCTTCAT
CGGGCCCCAAATCCAGCTGACTTCGCCGTGCTCACACGGCGACTCAAAAT
GCATTGCGACGATCAGTCATTCCGTGAACTGGTGATGCTCAAGCAGTGTC
TGTGGCGGTTCTTCCCACACTTTCCAAACGAGGATTTGCTCAAAAAAGGG
TGGCTCTGGCGGCTGCAAGAGATGCAAGGGCAGCAAGGCACATTATACTT
GGGAGCGAGTGTGTGTATGGATGCTTTGAATGAGGTTTTGCTTTATAACG
AAGTGGTGCTGGAGCGGATTTTGGGAGATTGAGTTTATCAGGAAGAATGG
AGAGAAGGGTGTAGCTGTGAAGGAAGGCAGGTCTAGTTTGGAAAAAAGTA
TGGGCTCAAATGAAGGAAGTGTACGTGTGCACGCAAGCATATAGGATTAC
GCTGTACTGAACACATTTTGAAGTTGTTGCTATGTTGTGTGAATGTAGAA
GGCAGAAAATTAAATGTAAACCAGCGTCAGAGCTTA
back to top

Coding sequence (CDS) from alignment at scaffold_3:939976..942011-

>mRNA_378 ID=mRNA_378|Name=jgi.p|Nanoce1779_2|238167|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at scaffold_3:939976..942011- (Nannochloropsis oceanica)
ATGGATGATGACGATGGTCTTCCCCGCGGCTTCGTCGCAGGCACAATCAT
CACTCATCCACCTCCATCCTGCGCTAGCAGCAAATGCAACAGCTCCAGAA
ATCACCCGCCACCACTTTTTCAATCTTCTTCGGTCTGTAATAATTCTCTC
TCCATACCGCACACGCCCTCCGAAGGCATCTCCACCAACACGCCCAAGCA
TATAAGCCCCGCTCCGTCTCCTTCCTCCCACTGCCCAGCCTCCTCTGTCC
CCCCTTCGCCGCACGCCGCAATAGCCAGCTCCGAATTCCAACAAAGCATA
AGCAGCCTTACTGGACATGTCCGTGAGACTAGCTTTTCCAAAATGCCCCC
CCTGCACCGTTTTCTAACCCGGGGTATCTCCAACATAAAAGAACACGTCA
GCCATCTCCTCGGTGGAGAGCCCTTGCTGGTTGCTGTCCGTCGATACATC
CGCTTACACAAACAGTTGCTGGGTGAGTACCCACTTGGTATGCCTCCCCG
TCCGAAGAATGAGTATCTCGCGGCGCTGGACCAAAAATTTGCGGAATTGC
TGGAGCATCACGATCTCTTAATTCTAATTCCTGTCTTTGTGTTGTGCCCG
GTGGTGTTCAGTCAACATTTCTTGCTGGAGATCCCGGCGTTGTATGGGCT
ATGGTGGTATCACCCGGAGAGAGTGACGGCCTTGGTTGACATTCGGAAAG
GGACGTTGATGCCGCCCCGCTATACGGTGCTGAAGTGTGGTTGGCAAGCG
CTGTGGGCTCGCATGGTGGAGATTGAAGGGTTGGACGTACATTTAAATGC
TAAAGTCAAATCTATTCGTCGGCCATGCATGAGTATGAAAGGGAAGCTTG
TAGTAGAAAAAAAGGGAGGGGGAAGGGGAGGAGAAGGAGGAGGGGGAAAA
GGAGGAGAAGCAGGAGGAGAAGGAGGAGAAAGAGGGCAGGCAGGTAGAAA
CGCGGTGGAAACGTACGAGTTTGACTTTATCGTCTTGGCGGGCAGTATGA
AATCTATTTTTCCCCTCCTTCTCGATGCCACGAATGAGGAACAAGAGCTT
GCAGAGGCCGCGACTGAATTCAGTCTGTGCAGCACTATTTTTGAAGCGGA
GGCCGTGACAGGTGAGCAGCCTGTCAAGCTCTATCCCTTATCCAAGGGAT
GCGCTGCCACGGGCCAGGTCTTCGCTCAGATCAATCCCCGGCTATTTGTA
CACAGTTCCACGGCAGTAGCTGCAGCGAGCCCTCGAGACGAGCAGCAGCA
AGAGTGGGACGGCGACTACGACGATAAAGACGTCCACGGCCAGAGTGGTA
GCCGCAGTAACAGCAGCAGTAGCAGCAACTGCGTTGCCTCTCTGCCTGCG
GCCAAAGAACCTCGCATAGTCTATCAGTTCCTTCATCGGGCCCCAAATCC
AGCTGACTTCGCCGTGCTCACACGGCGACTCAAAATGCATTGCGACGATC
AGTCATTCCGTGAACTGGTGATGCTCAAGCAGTGTCTGTGGCGGTTCTTC
CCACACTTTCCAAACGAGGATTTGCTCAAAAAAGGGTGGCTCTGGCGGCT
GCAAGAGATGCAAGGGCAGCAAGGCACATTATACTTGGGAGCGAGTGTGT
GTATGGATGCTTTGAATGAGGTTTTGCTTTATAACGAAGTGGTGCTGGAG
CGGATTTTGGGAGATTGA
back to top
Synonyms
Publications