jgi.p|Nanoce1779_2|605392, mRNA_9653 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605392
Unique NamemRNA_9653
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length356
Alignment locationscaffold_31:232843..234405 +

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Properties
Property NameValue
TranscriptId605478
TrackFilteredModels2
ProteinId605392
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:232843..234405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605392gene_9653Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605392mRNA_9653-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9653CDS_9653Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9653 ID=mRNA_9653|Name=jgi.p|Nanoce1779_2|605392|organism=Nannochloropsis oceanica|type=mRNA|length=356bp
GGTAGAATGGGCGTTTCGGTAGGACGAAGTACAGCATGCTTTCTACCGTC
ACTCTTTATGTCGTCTCGCTCCTGCTGCTCCTCAATCTCTTCTTCATGTC
CCTAATCCTTTATAACGCTTTCCCTTTTTCGCGAACGCATCACCCTGGAG
ACACAGGCAGCAACGTACTCGACGCGGCCTCACTTGACCCTGCTGTTGCC
GCGCATGCAACTGCTACCTCGTATTCATCTCTTCATGCGTCGCAGTCCGC
CGGGAGCTACTAACATCTGGGCACACTAGGTACCACTGTACTAGTGTACG
CAGACTTCTGATACGAAGTGGGGCAGATAGCAAATTGCCACCGTCGATCG
CCCTGT
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protein sequence of jgi.p|Nanoce1779_2|605392

>mRNA_9653-protein ID=mRNA_9653-protein|Name=jgi.p|Nanoce1779_2|605392|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MLSTVTLYVVSLLLLLNLFFMSLILYNAFPFSRTHHPGDTGSNVLDAASL
DPAVAAHATATSYSSLHASQSAGSY*
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mRNA from alignment at scaffold_31:232843..234405+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9653 ID=mRNA_9653|Name=jgi.p|Nanoce1779_2|605392|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at scaffold_31:232843..234405+ (Nannochloropsis oceanica)
GGTAGAATGGGCGTTTCGGTAGGACTGCTGCCTGGCAGATGCTCAAAGAT
CATGGAAAAATACTTTCCGGTAAGAGACATGAGACATATGTGCTTAGTGC
TTGCGTCTTTGGTGTAGCCTCTTTTAAGAACTCAATCTTTCTCTCTACTC
ACTTCTTTTTCCGGTACAACAGAGTGCAGAGAAGCATCGACGAGCGACGA
AAGAGGATTTGTCGGGATTAACGGCGGAGGACAAGGCAGAGCGACGTAAG
AAACGCGCACGCATGTATAATCGCATGTCTCGTAAGCGCCTTGACCGGCT
GCGTGGCGACCTGCACAACGACGTGAATCGCATGGAAATCTACAAGAATA
TTGTCGATGATGCACCGGGCATGATATGTGTCATTTCATCCGACATTCAA
AGCCAGGTTTTGTACATCAACAAGGCGGCTCGATGCGTCCTTCACACTGA
GCCCTCGCAGCTGCTAGGGTCCAGCTTCTGGGATATCGTCCACACGGAAG
ATAAGGTGGCGCTTCTCAGAGCCCTCATCGCCGTCACCACCTTCAAGTCG
GGTGGGAAAGTAGAAAAGCTAGACTGTCGTGTCGTCACTAATCACCCCGG
TATCTATGTCTCTGTCCGGATGGCGCTAGTAAATGGAATGCAGGGCATTG
TCTGTACAATGTGCCATGAATATCCCCTGCCCGCCATTTTGCGCATAACG
CCTGATGGACGGCAGTGTGTCATGTAGGGCGCTCTTTTTGGGGGCAGCAT
GATTACTGAACAATGAACAGTCGTGCAGATTAGCTACAATACGATCCTTT
ATCCAGATCTCTACCTCTCGTTCCAAGCACGGAAATCACTGCCATCTTCG
ATGCCGCTCGGTTCATCTCTAGATCTGCCTCGTTCTACACCGCTGCCAAA
GCGTATTTTGCCTCGACAATCTTCTCGCATACCACCAAAGCATTTTGTAC
CATCCTGAGCCTTTGGGTAGCATAGGGGGAGTAAGGAAAGGGGGGGCAGA
CGAAAGAAATCTGACTTTTTCAAACAGCAAAATAAGTAAAATGGAAGTAT
TGGGAAATAGACAGATTTTATGAAAATTGCGCGTCGTTTCTCTATTTCTG
CGATTTTGGGTCCATGCAAGGCATCCCCAATGATCGGAGAGCAGTCTCTC
CTGCAGCGACTGCAAATTAGCAAAAGCAGCCAGGGAAAAATAATGCCCCT
CCGCTTCCTCAATGGTGTCTCAGATGTACTCCTCAGGACAGCATGCTTTC
TACCGTCACTCTTTATGTCGTCTCGCTCCTGCTGCTCCTCAATCTCTTCT
TCATGTCCCTAATCCTTTATAACGCTTTCCCTTTTTCGCGAACGCATCAC
CCTGGAGACACAGGCAGCAACGTACTCGACGCGGCCTCACTTGACCCTGC
TGTTGCCGCGCATGCAACTGCTACCTCGTATTCATCTCTTCATGCGTCGC
AGTCCGCCGGGAGCTACTAACATCTGGGCACACTAGGTACCACTGTACTA
GTGTACGCAGACTTCTGATACGAAGTGGGGCAGATAGCAAATTGCCACCG
TCGATCGCCCTGT
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Coding sequence (CDS) from alignment at scaffold_31:232843..234405+

>mRNA_9653 ID=mRNA_9653|Name=jgi.p|Nanoce1779_2|605392|organism=Nannochloropsis oceanica|type=CDS|length=228bp|location=Sequence derived from alignment at scaffold_31:232843..234405+ (Nannochloropsis oceanica)
ATGCTTTCTACCGTCACTCTTTATGTCGTCTCGCTCCTGCTGCTCCTCAA
TCTCTTCTTCATGTCCCTAATCCTTTATAACGCTTTCCCTTTTTCGCGAA
CGCATCACCCTGGAGACACAGGCAGCAACGTACTCGACGCGGCCTCACTT
GACCCTGCTGTTGCCGCGCATGCAACTGCTACCTCGTATTCATCTCTTCA
TGCGTCGCAGTCCGCCGGGAGCTACTAA
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Synonyms
Publications