jgi.p|Nanoce1779_2|606814, mRNA_9189 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606814
Unique Name	mRNA_9189
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2894
Alignment location	scaffold_36:175598..178491 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606900
Track	FilteredModels2
ProteinId	606814

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:175598..178491 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606814	gene_9189	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606814	mRNA_9189-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9189	CDS_9189	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:175598..178491-
coding sequence from alignment at scaffold_36:175598..178491-

mRNA sequence

>mRNA_9189 ID=mRNA_9189|Name=jgi.p|Nanoce1779_2|606814|organism=Nannochloropsis oceanica|type=mRNA|length=2894bp
CACGTGCACCTCGAACGCCTTGCCCGCCATCAAATCAAATAATCTACGGG
GCCCTCCTTCCCTTCCTCCCTCTCCTCCCTCCTTCCCTCCCTTTTTCCAA
TCCCCCGGCAGTTTCACATAGCTCCTCAAGCCCACATCCGGGAGTATCAC
CTCTGTGCCTGTTCCGGTAGCAGTGGCAGTAACAACAGCGTAGGCTTCCC
CCGCCGCCTTGGCTTTCGAGGCACAATAAGTGGCGAATGACTCCAATAAA
ACCTTGTTCCGACTCACTGATCTCAGTTTCTGGGAGGCCTTGCTCTGCCA
GTTCACCTGCGTCATCCTCTGAATAACCTCATTCTTGGAGAAAGGCGCTT
GGCCCTTCAAAATAGCCACGACCTGATGCTGCACCAACACGTCGATATAC
CGTCTCAAGGGGCCCGTGCCAAACCTCGCCGCATCCAAACCCCCCGAGAC
CGAGCCCGGGGCAAGCGGCAAGGTCACACTGTGCGCCTTCAAGAAGCGAC
GACCCGCCTCCGAATAGAGGGCCAGGAACTCATCCACCATCAAATGAGCC
GGAGTCCTCTGGAAGGAAATCGCCTCCAGCTCCCCATTGGTGTTCCTCTT
CACCCGCGACACACGCTTGCTATCGGAAAAGTTTCGCTTGGTCATTCCCC
TTCGAGTGGTCGACGCCTCCAATAACACGGCTAGATCGGCAGCGGCTTTC
CTCCTGTACGCAGGAACCTGCTCAGGAGAAGAGGCCAGCAAATCATTCGC
CTCGTCGTACCTAACCCTTGTAACCGGCGGGATCAAGGACAATAAAAATC
TGACATTGACTACCCTCCCATCCTTCCCCAGAGTCACCGCCGCTGTCACA
CACTCGTTCACTTCTCGATCGCTCAAAGACGCCGCCTGCAACGCTTGCGG
CGGCAGCAAGTGTAGTGGCCCATCAGGCAAATACAAGGCTTCTCCTCTAT
GTCTCGCGAGCGCCTCAAGCTCCGGCGCACTCTCCAGCAACGGCTGAACA
TCAGCAATGTGAATCAAGATCTCTCCCGTCTCTGGATCGAACCCCAGGGC
ATCATCCGCGAACTCCGAGCCCGAGGGGTCCAACGCGTAGGCCCCCAAGC
CCGCCTTTCGGTAGTCGCACCGGCCATGCGGCCCTTTGCGACCGGGTCGA
TTTGGTGTCGCCACCTTCTCCAGCGCTGCCCGTCGTTTCTGCGTCTTATT
AAATGCCTCCTTAGCCAACTCCAAGATCTCTTCTGGCCAGGGGGTTGCAG
CGCTCCGAGCCGCAGCAGCAGCAGCAGCCATATCTGCCTGACGCTGTCCA
CGGCCGTCTCCTTTCTTCTCGGTCCAGCACCCAGCACGGAGGAGGACAGA
CTTGGCACCTTCAGGCGTGGCTGCCTCCCCTAGAGATTTGAGGACTTGCT
TGCTAGTGGCTGAGAGGCCTTCGACGCCCGCGCCCAAGGCGACTACCTCC
AGGTGGTGTAGCATCCGCCACTGAGACGCGTCCCACTGTGCCGATCCTGC
GGCAGGTGCCGCAGCAGCTGCAGTCCCATCGTCTCCCACTTCCTCTTCAC
CTTCGGTGGCCATTAATAGGCGCTTCTCCTCCGTGTGCCTTACGGCCTGC
ACGAACGACATGACCTCTCGCGAGTGCACCACTGATGGCTCCAGCGGCTT
GAACCCCTGCCCTACTATCATCAATACCTCTTCCTCCACACACCCTCTCT
CCCCTTCCTCCTTGGTCTCAACGGTAGGCACGCTTCGCTTAAATCGAAAC
GTTTCCGAACCCAACAAAATAGCAGCCGCATAACGTTGCGCAGGGGTGAC
CCGTGGCAGCCTGAGGAAGGAAATTGATTTGGTAATCCCACTACCGATAC
CTTCACCACTGCTAGCCCCTGCTTCCGCTTCTTTTTCTGCTTCTCGCATC
CGTTGCTGCTGCTCTCGCTTCAAGGCCGCTTCGTACTCAGGTCGCTGGAA
GAGAAAGGCGGCCAGGTGGTGGGAATCCACTGGGGCTTTATCCCTTTTCC
ACCTCAGCATGGCAGAAGACCAGAACGCCTCCAATGACAACGCATGGGGC
GTCAGACTCTTCATTGCTTTCGCCGCCCTCAACCTCAATGCTGCCCATGA
CTCAGGCGTGGTCGGCGGGGGAGCATTCGCACTCGGAACCAAAAAGCTGT
TGATCTCGTCCTCCTGATCTTCTTGCATGCCAGCAAGCATATTTTCAGCC
CACACACCCGTCACTTGCCCCACGTCCAGTGTCACAATCTCCCCGTGCTC
GACTCGCACTTTGATTGAGACCTTTTTACCATGCCCCACGTAGTTCCCAA
AGGCCAGTTGGCCGCCCCGCCATACTTCCACCGGGGTCTCGGGGAGCAGC
TCGATGGGGCCGGGGCCCCGAGGCGGAAGCTTCTTATTCTTAGCCTTGGT
CTTTGGCTTCTTGCTTCCCGTGCCTCCCATCATGTGCTTGAATTCCGCTA
CCATTGCCGCCTCGTCCTCCACGGTAAACCCTTCATCCTTCTTGCTCTCG
CCTTCGGCTTCCTTCTTTTGCTTTAGGTTGGCGAAGCGACGGGTCTGTAT
CGTCGGGCGTGGGGAGGCTGTGACTGCCGTTGCTCCTGATGCTGTCTTCG
AGGCAAAAGACGACGGCATTGACGAAAAAGATGGCCGCATGATGAAAGAT
TGTGCTTGTTGCGCCATGCCCAAGGCCAGGGCGAGGCCTAGGATGAGCAA
GGGTTGTGGACGGCTGCCGGATGTGGTGGTGTTGGGGACTGCCGCGCGGC
CGAGATCATTCTCCTTCCCTCCTCTTCTTCGCCTTTTTGACCAGCTGACA
CCTTTACATGATGGGTGCATGGTCCTCCCTTTTGTGTCTTGCTGTTGGTA
AGTTGGGAGCCGTAGAGTTTTTGGTATGTTGAGGAGGGGCGGCT

protein sequence of jgi.p|Nanoce1779_2|606814

>mRNA_9189-protein ID=mRNA_9189-protein|Name=jgi.p|Nanoce1779_2|606814|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MGPGPRGGSFLFLALVFGFLLPVPPIMCLNSATIAASSSTVNPSSFLLSP
SASFFCFRLAKRRVCIVGRGEAVTAVAPDAVFEAKDDGIDEKDGRMMKDC
ACCAMPKARARPRMSKGCGRLPDVVVLGTAARPRSFSFPPLLRLFDQLTP
LHDGCMVLPFVSCCW*

mRNA from alignment at scaffold_36:175598..178491-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9189 ID=mRNA_9189|Name=jgi.p|Nanoce1779_2|606814|organism=Nannochloropsis oceanica|type=mRNA|length=2894bp|location=Sequence derived from alignment at scaffold_36:175598..178491- (Nannochloropsis oceanica)
CACGTGCACCTCGAACGCCTTGCCCGCCATCAAATCAAATAATCTACGGG
GCCCTCCTTCCCTTCCTCCCTCTCCTCCCTCCTTCCCTCCCTTTTTCCAA
TCCCCCGGCAGTTTCACATAGCTCCTCAAGCCCACATCCGGGAGTATCAC
CTCTGTGCCTGTTCCGGTAGCAGTGGCAGTAACAACAGCGTAGGCTTCCC
CCGCCGCCTTGGCTTTCGAGGCACAATAAGTGGCGAATGACTCCAATAAA
ACCTTGTTCCGACTCACTGATCTCAGTTTCTGGGAGGCCTTGCTCTGCCA
GTTCACCTGCGTCATCCTCTGAATAACCTCATTCTTGGAGAAAGGCGCTT
GGCCCTTCAAAATAGCCACGACCTGATGCTGCACCAACACGTCGATATAC
CGTCTCAAGGGGCCCGTGCCAAACCTCGCCGCATCCAAACCCCCCGAGAC
CGAGCCCGGGGCAAGCGGCAAGGTCACACTGTGCGCCTTCAAGAAGCGAC
GACCCGCCTCCGAATAGAGGGCCAGGAACTCATCCACCATCAAATGAGCC
GGAGTCCTCTGGAAGGAAATCGCCTCCAGCTCCCCATTGGTGTTCCTCTT
CACCCGCGACACACGCTTGCTATCGGAAAAGTTTCGCTTGGTCATTCCCC
TTCGAGTGGTCGACGCCTCCAATAACACGGCTAGATCGGCAGCGGCTTTC
CTCCTGTACGCAGGAACCTGCTCAGGAGAAGAGGCCAGCAAATCATTCGC
CTCGTCGTACCTAACCCTTGTAACCGGCGGGATCAAGGACAATAAAAATC
TGACATTGACTACCCTCCCATCCTTCCCCAGAGTCACCGCCGCTGTCACA
CACTCGTTCACTTCTCGATCGCTCAAAGACGCCGCCTGCAACGCTTGCGG
CGGCAGCAAGTGTAGTGGCCCATCAGGCAAATACAAGGCTTCTCCTCTAT
GTCTCGCGAGCGCCTCAAGCTCCGGCGCACTCTCCAGCAACGGCTGAACA
TCAGCAATGTGAATCAAGATCTCTCCCGTCTCTGGATCGAACCCCAGGGC
ATCATCCGCGAACTCCGAGCCCGAGGGGTCCAACGCGTAGGCCCCCAAGC
CCGCCTTTCGGTAGTCGCACCGGCCATGCGGCCCTTTGCGACCGGGTCGA
TTTGGTGTCGCCACCTTCTCCAGCGCTGCCCGTCGTTTCTGCGTCTTATT
AAATGCCTCCTTAGCCAACTCCAAGATCTCTTCTGGCCAGGGGGTTGCAG
CGCTCCGAGCCGCAGCAGCAGCAGCAGCCATATCTGCCTGACGCTGTCCA
CGGCCGTCTCCTTTCTTCTCGGTCCAGCACCCAGCACGGAGGAGGACAGA
CTTGGCACCTTCAGGCGTGGCTGCCTCCCCTAGAGATTTGAGGACTTGCT
TGCTAGTGGCTGAGAGGCCTTCGACGCCCGCGCCCAAGGCGACTACCTCC
AGGTGGTGTAGCATCCGCCACTGAGACGCGTCCCACTGTGCCGATCCTGC
GGCAGGTGCCGCAGCAGCTGCAGTCCCATCGTCTCCCACTTCCTCTTCAC
CTTCGGTGGCCATTAATAGGCGCTTCTCCTCCGTGTGCCTTACGGCCTGC
ACGAACGACATGACCTCTCGCGAGTGCACCACTGATGGCTCCAGCGGCTT
GAACCCCTGCCCTACTATCATCAATACCTCTTCCTCCACACACCCTCTCT
CCCCTTCCTCCTTGGTCTCAACGGTAGGCACGCTTCGCTTAAATCGAAAC
GTTTCCGAACCCAACAAAATAGCAGCCGCATAACGTTGCGCAGGGGTGAC
CCGTGGCAGCCTGAGGAAGGAAATTGATTTGGTAATCCCACTACCGATAC
CTTCACCACTGCTAGCCCCTGCTTCCGCTTCTTTTTCTGCTTCTCGCATC
CGTTGCTGCTGCTCTCGCTTCAAGGCCGCTTCGTACTCAGGTCGCTGGAA
GAGAAAGGCGGCCAGGTGGTGGGAATCCACTGGGGCTTTATCCCTTTTCC
ACCTCAGCATGGCAGAAGACCAGAACGCCTCCAATGACAACGCATGGGGC
GTCAGACTCTTCATTGCTTTCGCCGCCCTCAACCTCAATGCTGCCCATGA
CTCAGGCGTGGTCGGCGGGGGAGCATTCGCACTCGGAACCAAAAAGCTGT
TGATCTCGTCCTCCTGATCTTCTTGCATGCCAGCAAGCATATTTTCAGCC
CACACACCCGTCACTTGCCCCACGTCCAGTGTCACAATCTCCCCGTGCTC
GACTCGCACTTTGATTGAGACCTTTTTACCATGCCCCACGTAGTTCCCAA
AGGCCAGTTGGCCGCCCCGCCATACTTCCACCGGGGTCTCGGGGAGCAGC
TCGATGGGGCCGGGGCCCCGAGGCGGAAGCTTCTTATTCTTAGCCTTGGT
CTTTGGCTTCTTGCTTCCCGTGCCTCCCATCATGTGCTTGAATTCCGCTA
CCATTGCCGCCTCGTCCTCCACGGTAAACCCTTCATCCTTCTTGCTCTCG
CCTTCGGCTTCCTTCTTTTGCTTTAGGTTGGCGAAGCGACGGGTCTGTAT
CGTCGGGCGTGGGGAGGCTGTGACTGCCGTTGCTCCTGATGCTGTCTTCG
AGGCAAAAGACGACGGCATTGACGAAAAAGATGGCCGCATGATGAAAGAT
TGTGCTTGTTGCGCCATGCCCAAGGCCAGGGCGAGGCCTAGGATGAGCAA
GGGTTGTGGACGGCTGCCGGATGTGGTGGTGTTGGGGACTGCCGCGCGGC
CGAGATCATTCTCCTTCCCTCCTCTTCTTCGCCTTTTTGACCAGCTGACA
CCTTTACATGATGGGTGCATGGTCCTCCCTTTTGTGTCTTGCTGTTGGTA
AGTTGGGAGCCGTAGAGTTTTTGGTATGTTGAGGAGGGGCGGCT

Coding sequence (CDS) from alignment at scaffold_36:175598..178491-

>mRNA_9189 ID=mRNA_9189|Name=jgi.p|Nanoce1779_2|606814|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_36:175598..178491- (Nannochloropsis oceanica)
ATGGGGCCGGGGCCCCGAGGCGGAAGCTTCTTATTCTTAGCCTTGGTCTT
TGGCTTCTTGCTTCCCGTGCCTCCCATCATGTGCTTGAATTCCGCTACCA
TTGCCGCCTCGTCCTCCACGGTAAACCCTTCATCCTTCTTGCTCTCGCCT
TCGGCTTCCTTCTTTTGCTTTAGGTTGGCGAAGCGACGGGTCTGTATCGT
CGGGCGTGGGGAGGCTGTGACTGCCGTTGCTCCTGATGCTGTCTTCGAGG
CAAAAGACGACGGCATTGACGAAAAAGATGGCCGCATGATGAAAGATTGT
GCTTGTTGCGCCATGCCCAAGGCCAGGGCGAGGCCTAGGATGAGCAAGGG
TTGTGGACGGCTGCCGGATGTGGTGGTGTTGGGGACTGCCGCGCGGCCGA
GATCATTCTCCTTCCCTCCTCTTCTTCGCCTTTTTGACCAGCTGACACCT
TTACATGATGGGTGCATGGTCCTCCCTTTTGTGTCTTGCTGTTGGTAA

Synonyms

Publications