jgi.p|Nanoce1779_2|551680, mRNA_2027 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|551680
Unique NamemRNA_2027
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1673
Alignment locationscaffold_4:592025..593911 -

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Properties
Property NameValue
TranscriptId551766
TrackFilteredModels2
ProteinId551680
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:592025..593911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551680gene_2027Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551680mRNA_2027-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2027CDS_2027Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2027 ID=mRNA_2027|Name=jgi.p|Nanoce1779_2|551680|organism=Nannochloropsis oceanica|type=mRNA|length=1673bp
ATGGGCGACTGGGCCGAAGCCAAGGCCAAGGGCAACCAGGCCTACCAAGC
CGGGAACCATCAACAAGCTATCAAGCATTTCACGACTGCGATCGAGCTGG
AGACCCCCAAGAACACTGGAAAACAACTGCACATTTTGTATTCGAACCGC
TCGGCTGCCCAGCTCAGTTTGGGCCTAGCCCACGAGGCGCTCATGGACGC
CAAAAAATGCCAGGAACTGGAGCCGACATTTGCCAAAGGCTGGAGCCGTG
AGGGTGCTGCCTTGTATCGACTGGGACGGTTCTCCGACGCTATGGCGGCT
TACGAAGCCGGGTTGCAGCAGACGCCGGGAAATGCGGTAAGTGAGAAGTT
TTTGGTGCTCTCCCGCAAAGCCGCGGATCAAACGCGGGTTCCCACTCTCA
ACGAGCTTCTGCCTAAAATGCAAGCATTTTTGCTGAAACACCGCTTGGAC
GGCCGGCTCTTCCTCCCCCGGATCTTTCTTTTTCTCAATGCCTTTCTCTA
CCTCTTCCCGTTCCTCCTCCCCTCCGGGTGGGGCCTAGCCAGCTATCGTC
GTGCACTTTACACCATCGCGCTGATACACCTCTACTCTATCTACTACACC
CATGGCATGCCGAAATTTAAAATCGAATACCTGGCGCAAGTCATGCAAGA
CACGCATGCCCCCCCCCTCTTCCTCTCCCTCCTCCTCCTCTCCTTCAAAG
GTAAAGCTTATATCTTCGGCCTGACCCCCTTGCTGCTCACCGAAGGGATA
CAACTCCTATGGCTTTTCACCGAGGTCCTTACTCTTGCCAAACCCATTTT
CGGGAAATCCCTCTCCGCGCGCAACACAAGCCTTGCTTCACTTTACACTC
AAAATCCGCAATATGGTGCCATCTCCTCAGGCCCCGCACGGTGGCAAGCC
ATCTTCACCGCAACCATTTCGCACGCAATCACCCTTGAGATAGCCATGGG
TCTTTTTCTGGTGTTGGAACTGTTCACGCCCTGGCGGAACACGTTCGGCT
TGTTCCTGTTTTGGCAGTATCTCCAAATGAGGTACATGCTCGACAAAAGC
GGCGAAGTCAAAAATAAATTCAAAAAGTTGGACGAGTTTTTTTTGAATCT
GACCAGTCACTCAAAGTGTCCCGGGGTGGTAGGACAGGCCTATTCAATGC
TGAGGGGGTATATGGGGAGGGCTGTTGCGATGCCGGATCCTCAGCAGCAG
CAGCAGCAGCAGCGTGGGGGTGGTGGGTTGGGCCGGTGTAGTGTGATGTG
AGGTGGGAGGGAGAGGAGGGGGGAATTTGGGGAGGAGGGAGGAGAGGCCT
ACCAAACATTATATCATTCTTCTCTGCTATCTCTGAGGTGTGGTCAAGGT
GGCAGAGGAGGGGGAGAAGAGGAAGGAGAAAGAAGAGGAGTAAAGAAAAA
AAACAAGAAGTGGAGGTGGAGGATGGAGGAGGAGGAGTATGAGTATTGTA
TGTACAGCTAGAGAGATAAGGAAAAGCCTTCCCTTGAAAGGCAACAAATG
TCGAAGCATCAGTTTTGTCAGCGAAAAGGATAGGGAAGCAAGGGGAGATA
ACCAAACAAAGACATACCTTCTTCGATTAGACATCGACCCCCAGACCAAC
CAAAGAAACGAAAACGATTTTGCAATCAAGTAAAAAAAAAGAACGGGGGG
AGAGTTACCAGGCAGGATCTCCG
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protein sequence of jgi.p|Nanoce1779_2|551680

>mRNA_2027-protein ID=mRNA_2027-protein|Name=jgi.p|Nanoce1779_2|551680|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MGDWAEAKAKGNQAYQAGNHQQAIKHFTTAIELETPKNTGKQLHILYSNR
SAAQLSLGLAHEALMDAKKCQELEPTFAKGWSREGAALYRLGRFSDAMAA
YEAGLQQTPGNAVSEKFLVLSRKAADQTRVPTLNELLPKMQAFLLKHRLD
GRLFLPRIFLFLNAFLYLFPFLLPSGWGLASYRRALYTIALIHLYSIYYT
HGMPKFKIEYLAQVMQDTHAPPLFLSLLLLSFKGKAYIFGLTPLLLTEGI
QLLWLFTEVLTLAKPIFGKSLSARNTSLASLYTQNPQYGAISSGPARWQA
IFTATISHAITLEIAMGLFLVLELFTPWRNTFGLFLFWQYLQMRYMLDKS
GEVKNKFKKLDEFFLNLTSHSKCPGVVGQAYSMLRGYMGRAVAMPDPQQQ
QQQQRGGGGLGRCSVM*
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mRNA from alignment at scaffold_4:592025..593911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2027 ID=mRNA_2027|Name=jgi.p|Nanoce1779_2|551680|organism=Nannochloropsis oceanica|type=mRNA|length=1887bp|location=Sequence derived from alignment at scaffold_4:592025..593911- (Nannochloropsis oceanica)
ATGGGCGACTGGGCCGAAGCCAAGGCCAAGGGCAACCAGGCCTACCAAGC
CGGGAACCATCAACAAGCTATCAAGCATTTCACGACTGCGATCGAGCTGG
AGACCCCCAAGAACACTGGAAAACAACTGCACATTTTGTATTCGAACCGC
TCGGCTGCCCAGCTCAGTTTGGGCCTAGCCCACGAGGCGCTCATGGACGC
CAAAAAATGCCAGGAACTGGAGCCGACATTTGCCAAAGGCTGGAGCCGTG
AGGGTGCTGCCTTGTATCGACTGGGACGGTTCTCCGACGCTATGGCGGCT
TACGAAGCCGGGTTGCAGCAGACGCCGGGAAATGCGGTAAGTGAGAAGTT
TTTGGTGCTCTGTATGGGATGATAGGGGAGGGAAGGATTGGAAGTAGACT
AGTCTGCGAAGGCCCGATATTATTTTGGTCTTCTCTTTAGCCTTCTCTTT
GGTCTTCATAGGCCCGTGGTCGTCCATTCACTCAAACTATATCCTCTTAT
TTACTCACCCGCATTCTCCATCCACCACCAATCCTATCACCACCTCACAG
GACCTGACCCGCGCCCTAGCCGAAGCCCGCAAAGCCGCGGATCAAACGCG
GGTTCCCACTCTCAACGAGCTTCTGCCTAAAATGCAAGCATTTTTGCTGA
AACACCGCTTGGACGGCCGGCTCTTCCTCCCCCGGATCTTTCTTTTTCTC
AATGCCTTTCTCTACCTCTTCCCGTTCCTCCTCCCCTCCGGGTGGGGCCT
AGCCAGCTATCGTCGTGCACTTTACACCATCGCGCTGATACACCTCTACT
CTATCTACTACACCCATGGCATGCCGAAATTTAAAATCGAATACCTGGCG
CAAGTCATGCAAGACACGCATGCCCCCCCCCTCTTCCTCTCCCTCCTCCT
CCTCTCCTTCAAAGGTAAAGCTTATATCTTCGGCCTGACCCCCTTGCTGC
TCACCGAAGGGATACAACTCCTATGGCTTTTCACCGAGGTCCTTACTCTT
GCCAAACCCATTTTCGGGAAATCCCTCTCCGCGCGCAACACAAGCCTTGC
TTCACTTTACACTCAAAATCCGCAATATGGTGCCATCTCCTCAGGCCCCG
CACGGTGGCAAGCCATCTTCACCGCAACCATTTCGCACGCAATCACCCTT
GAGATAGCCATGGGTCTTTTTCTGGTGTTGGAACTGTTCACGCCCTGGCG
GAACACGTTCGGCTTGTTCCTGTTTTGGCAGTATCTCCAAATGAGGTACA
TGCTCGACAAAAGCGGCGAAGTCAAAAATAAATTCAAAAAGTTGGACGAG
TTTTTTTTGAATCTGACCAGTCACTCAAAGTGTCCCGGGGTGGTAGGACA
GGCCTATTCAATGCTGAGGGGGTATATGGGGAGGGCTGTTGCGATGCCGG
ATCCTCAGCAGCAGCAGCAGCAGCAGCGTGGGGGTGGTGGGTTGGGCCGG
TGTAGTGTGATGTGAGGTGGGAGGGAGAGGAGGGGGGAATTTGGGGAGGA
GGGAGGAGAGGCCTACCAAACATTATATCATTCTTCTCTGCTATCTCTGA
GGTGTGGTCAAGGTGGCAGAGGAGGGGGAGAAGAGGAAGGAGAAAGAAGA
GGAGTAAAGAAAAAAAACAAGAAGTGGAGGTGGAGGATGGAGGAGGAGGA
GTATGAGTATTGTATGTACAGCTAGAGAGATAAGGAAAAGCCTTCCCTTG
AAAGGCAACAAATGTCGAAGCATCAGTTTTGTCAGCGAAAAGGATAGGGA
AGCAAGGGGAGATAACCAAACAAAGACATACCTTCTTCGATTAGACATCG
ACCCCCAGACCAACCAAAGAAACGAAAACGATTTTGCAATCAAGTAAAAA
AAAAGAACGGGGGGAGAGTTACCAGGCAGGATCTCCG
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Coding sequence (CDS) from alignment at scaffold_4:592025..593911-

>mRNA_2027 ID=mRNA_2027|Name=jgi.p|Nanoce1779_2|551680|organism=Nannochloropsis oceanica|type=CDS|length=2502bp|location=Sequence derived from alignment at scaffold_4:592025..593911- (Nannochloropsis oceanica)
CCCGCAAAGCCGCGGATCAAACGCGGGTTCCCACTCTCAACGAGCTTCTG
CCTAAAATGCAAGCATTTTTGCTGAAACACCGCTTGGACGGCCGGCTCTT
CCTCCCCCGGATCTTTCTTTTTCTCAATGCCTTTCTCTACCTCTTCCCGT
TCCTCCTCCCCTCCGGGTGGGGCCTAGCCAGCTATCGTCGTGCACTTTAC
ACCATCGCGCTGATACACCTCTACTCTATCTACTACACCCATGGCATGCC
GAAATTTAAAATCGAATACCTGGCGCAAGTCATGCAAGACACGCATGCCC
CCCCCCTCTTCCTCTCCCTCCTCCTCCTCTCCTTCAAAGGTAAAGCTTAT
ATCTTCGGCCTGACCCCCTTGCTGCTCACCGAAGGGATACAACTCCTATG
GCTTTTCACCGAGGTCCTTACTCTTGCCAAACCCATTTTCGGGAAATCCC
TCTCCGCGCGCAACACAAGCCTTGCTTCACTTTACACTCAAAATCCGCAA
TATGGTGCCATCTCCTCAGGCCCCGCACGGTGGCAAGCCATCTTCACCGC
AACCATTTCGCACGCAATCACCCTTGAGATAGCCATGGGTCTTTTTCTGG
TGTTGGAACTGTTCACGCCCTGGCGGAACACGTTCGGCTTGTTCCTGTTT
TGGCAGTATCTCCAAATGAGGTACATGCTCGACAAAAGCGGCGAAGTCAA
AAATAAATTCAAAAAGTTGGACGAGTTTTTTTTGAATCTGACCAGTCACT
CAAAGTGTCCCGGGGTGGTAGGACAGGCCTATTCAATGCTGAGGGGGTAT
ATGGGGAGGGCTGTTGCGATGCCGGATCCTCAGCAGCAGCAGCAGCAGCA
GCGTGGGGGTGGTGGGTTGGGCCGGTGTAGTGTGATGTGAATGGGCGACT
GGGCCGAAGCCAAGGCCAAGGGCAACCAGGCCTACCAAGCCGGGAACCAT
CAACAAGCTATCAAGCATTTCACGACTGCGATCGAGCTGGAGACCCCCAA
GAACACTGGAAAACAACTGCACATTTTGTATTCGAACCGCTCGGCTGCCC
AGCTCAGTTTGGGCCTAGCCCACGAGGCGCTCATGGACGCCAAAAAATGC
CAGGAACTGGAGCCGACATTTGCCAAAGGCTGGAGCCGTGAGGGTGCTGC
CTTGTATCGACTGGGACGGTTCTCCGACGCTATGGCGGCTTACGAAGCCG
GGTTGCAGCAGACGCCGGGAAATGCGGTAAGTGAGAAGTTTTTGGTGCTC
TCCCGCAAAGCCGCGGATCAAACGCGGGTTCCCACTCTCAACGAGCTTCT
GCCTAAAATGCAAGCATTTTTGCTGAAACACCGCTTGGACGGCCGGCTCT
TCCTCCCCCGGATCTTTCTTTTTCTCAATGCCTTTCTCTACCTCTTCCCG
TTCCTCCTCCCCTCCGGGTGGGGCCTAGCCAGCTATCGTCGTGCACTTTA
CACCATCGCGCTGATACACCTCTACTCTATCTACTACACCCATGGCATGC
CGAAATTTAAAATCGAATACCTGGCGCAAGTCATGCAAGACACGCATGCC
CCCCCCCTCTTCCTCTCCCTCCTCCTCCTCTCCTTCAAAGGTAAAGCTTA
TATCTTCGGCCTGACCCCCTTGCTGCTCACCGAAGGGATACAACTCCTAT
GGCTTTTCACCGAGGTCCTTACTCTTGCCAAACCCATTTTCGGGAAATCC
CTCTCCGCGCGCAACACAAGCCTTGCTTCACTTTACACTCAAAATCCGCA
ATATGGTGCCATCTCCTCAGGCCCCGCACGGTGGCAAGCCATCTTCACCG
CAACCATTTCGCACGCAATCACCCTTGAGATAGCCATGGGTCTTTTTCTG
GTGTTGGAACTGTTCACGCCCTGGCGGAACACGTTCGGCTTGTTCCTGTT
TTGGCAGTATCTCCAAATGAGGTACATGCTCGACAAAAGCGGCGAAGTCA
AAAATAAATTCAAAAAGTTGGACGAGTTTTTTTTGAATCTGACCAGTCAC
TCAAAGTGTCCCGGGGTGGTAGGACAGGCCTATTCAATGCTGAGGGGGTA
TATGGGGAGGGCTGTTGCGATGCCGGATCCTCAGCAGCAGCAGCAGCAGC
AGCGTGGGGGTGGTGGGTTGGGCCGGTGTAGTGTGATGTGAATGGGCGAC
TGGGCCGAAGCCAAGGCCAAGGGCAACCAGGCCTACCAAGCCGGGAACCA
TCAACAAGCTATCAAGCATTTCACGACTGCGATCGAGCTGGAGACCCCCA
AGAACACTGGAAAACAACTGCACATTTTGTATTCGAACCGCTCGGCTGCC
CAGCTCAGTTTGGGCCTAGCCCACGAGGCGCTCATGGACGCCAAAAAATG
CCAGGAACTGGAGCCGACATTTGCCAAAGGCTGGAGCCGTGAGGGTGCTG
CCTTGTATCGACTGGGACGGTTCTCCGACGCTATGGCGGCTTACGAAGCC
GGGTTGCAGCAGACGCCGGGAAATGCGGTAAGTGAGAAGTTTTTGGTGCT
CT
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Synonyms
Publications