jgi.p|Nanoce1779_2|578445, mRNA_1931 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578445
Unique NamemRNA_1931
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length625
Alignment locationscaffold_4:380638..381262 -

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Properties
Property NameValue
TranscriptId578531
TrackFilteredModels2
ProteinId578445
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:380638..381262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578445gene_1931Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578445mRNA_1931-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1931CDS_1931Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1931 ID=mRNA_1931|Name=jgi.p|Nanoce1779_2|578445|organism=Nannochloropsis oceanica|type=mRNA|length=625bp
ACAGCAGGACCACCATGTCCTCTTCGACGCCCACCGACGAGGAAGTGCCG
TCGGCCCCCGCAGAGACCGCGCCGGCGCAACTACCCGCGCCAGACCCTCC
TGCAGCGACAACAGACGCAGTGCCCGACGCTGCTATTGAGGACACCAAGC
GCCCCGCAGCAGAGGCAATGACAGAGGGAGAGGGAGCAGTGGCATCAGTG
GCAGCGCCCATACCAAGTAAAAAGCCTCGGAACGCTCCTGCCCCGCCAAT
CTCCGCGACTTCAGAGTATGTGACCGAGGAGACAACTTTCCTGATTCCTA
AGGCTTCGATCAAGCGCATCATGAAACTGGACCCGGACTCGAAGCAATTA
TCCCAGGACGCCATCATGCTAATGGCCAAGGCCACGGAGTTGTTTGTGGA
TAAGCTTGCCAAGGCCTCGCATGCAATGGCGGTATCGAATAAACGGAAGA
CGATAAAGTATGAGGACATTGCTGATGCCCGCCTTTCGGTTAAGTCTCTG
GAGTTTTTGGATGGAGTGGTGCCGCAGATTCCCTGAAGAGAAGTAAAGTG
AAAGAGAATGAGACAAAGAATACGTGGATCATATTTATCAACGTGCATAT
CTGTAATAAAAGAAAAAAGGAAGAC
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protein sequence of jgi.p|Nanoce1779_2|578445

>mRNA_1931-protein ID=mRNA_1931-protein|Name=jgi.p|Nanoce1779_2|578445|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MSSSTPTDEEVPSAPAETAPAQLPAPDPPAATTDAVPDAAIEDTKRPAAE
AMTEGEGAVASVAAPIPSKKPRNAPAPPISATSEYVTEETTFLIPKASIK
RIMKLDPDSKQLSQDAIMLMAKATELFVDKLAKASHAMAVSNKRKTIKYE
DIADARLSVKSLEFLDGVVPQIP*
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mRNA from alignment at scaffold_4:380638..381262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1931 ID=mRNA_1931|Name=jgi.p|Nanoce1779_2|578445|organism=Nannochloropsis oceanica|type=mRNA|length=625bp|location=Sequence derived from alignment at scaffold_4:380638..381262- (Nannochloropsis oceanica)
ACAGCAGGACCACCATGTCCTCTTCGACGCCCACCGACGAGGAAGTGCCG
TCGGCCCCCGCAGAGACCGCGCCGGCGCAACTACCCGCGCCAGACCCTCC
TGCAGCGACAACAGACGCAGTGCCCGACGCTGCTATTGAGGACACCAAGC
GCCCCGCAGCAGAGGCAATGACAGAGGGAGAGGGAGCAGTGGCATCAGTG
GCAGCGCCCATACCAAGTAAAAAGCCTCGGAACGCTCCTGCCCCGCCAAT
CTCCGCGACTTCAGAGTATGTGACCGAGGAGACAACTTTCCTGATTCCTA
AGGCTTCGATCAAGCGCATCATGAAACTGGACCCGGACTCGAAGCAATTA
TCCCAGGACGCCATCATGCTAATGGCCAAGGCCACGGAGTTGTTTGTGGA
TAAGCTTGCCAAGGCCTCGCATGCAATGGCGGTATCGAATAAACGGAAGA
CGATAAAGTATGAGGACATTGCTGATGCCCGCCTTTCGGTTAAGTCTCTG
GAGTTTTTGGATGGAGTGGTGCCGCAGATTCCCTGAAGAGAAGTAAAGTG
AAAGAGAATGAGACAAAGAATACGTGGATCATATTTATCAACGTGCATAT
CTGTAATAAAAGAAAAAAGGAAGAC
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Coding sequence (CDS) from alignment at scaffold_4:380638..381262-

>mRNA_1931 ID=mRNA_1931|Name=jgi.p|Nanoce1779_2|578445|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_4:380638..381262- (Nannochloropsis oceanica)
ATGTCCTCTTCGACGCCCACCGACGAGGAAGTGCCGTCGGCCCCCGCAGA
GACCGCGCCGGCGCAACTACCCGCGCCAGACCCTCCTGCAGCGACAACAG
ACGCAGTGCCCGACGCTGCTATTGAGGACACCAAGCGCCCCGCAGCAGAG
GCAATGACAGAGGGAGAGGGAGCAGTGGCATCAGTGGCAGCGCCCATACC
AAGTAAAAAGCCTCGGAACGCTCCTGCCCCGCCAATCTCCGCGACTTCAG
AGTATGTGACCGAGGAGACAACTTTCCTGATTCCTAAGGCTTCGATCAAG
CGCATCATGAAACTGGACCCGGACTCGAAGCAATTATCCCAGGACGCCAT
CATGCTAATGGCCAAGGCCACGGAGTTGTTTGTGGATAAGCTTGCCAAGG
CCTCGCATGCAATGGCGGTATCGAATAAACGGAAGACGATAAAGTATGAG
GACATTGCTGATGCCCGCCTTTCGGTTAAGTCTCTGGAGTTTTTGGATGG
AGTGGTGCCGCAGATTCCCTGA
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Synonyms
Publications