jgi.p|Nanoce1779_2|579449, mRNA_2198 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579449
Unique NamemRNA_2198
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1597
Alignment locationscaffold_4:1045571..1047368 -

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Properties
Property NameValue
TranscriptId579535
TrackFilteredModels2
ProteinId579449
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1045571..1047368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579449gene_2198Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579449mRNA_2198-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2198CDS_2198Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2198 ID=mRNA_2198|Name=jgi.p|Nanoce1779_2|579449|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp
TACCTGACGCGCCCTTCCTGCAAGACACCTGGGCGCAAGATGATGACGGC
CTCTCGCTTATCAAACCTGCCTTTGATGGTGACGTTCTATCCGTCTTCCG
TACCTTGACCGAGAATTACAAGGACCAATTACAAGAAATCTGGGGCCAGC
CAGAGGTGGCCAAGGCGTTGTTGACCAACTTCCCCATGTTTAGTGGTATT
AAGGGCATGGCAAGCATTGCACAGAAGGAAGGGCCTTTGACGTCTGCGGA
CGTACGTCGGGAGGGAAGGATGGAGAGATGTGGATTAAGAGATGAGATAG
GGAGTTGGAATGGAGATATATGAAGGCATTATGCCATGTGCTAAATGTGT
CATCATATACCTCCCTTTGCATCGAGTAATGACCTCAGTACCTCTTTTCC
TCCCATCTCTGCCAGCTCACTTCCCATTTTCTGCCCTCCTTTCTTCCCAT
CCAAAAAGGGTCTCTCGGCCCTGAGCGCTTTCACAGACTACCTCGCCGCC
ACTGCCCGCGTCTTGGAAGAGGTCGTGGACCCCGGCAAATTCGCGGCAAA
AATGCAAACGTATCAATCACTGAAAGACCCCGTGCTGAAAGACTTGGTGG
CACGGACCGAGAAGGGAGATGTGGAGGCAACGCTGGCGTTGCAGCAAGAG
ATTGTGAATAGGGAGCTGGGCGACATTATTGATCTCGAAGCCTTTGGCAT
CCGCGGTTTGGAACCTGCCGCCGTCAGTAGCCTCCGAAATATGATAAAAG
ACACGGAGCCAGCTTTGTACAAACTGATACTCACCGACGACAAGATCGCG
CAGAAATTCATGGATGACCCCTCGGCCGCATACCGCGAGGCGCAAGCCCT
CAGTCCATCTTTGGCGGAAGCGGCGAAGGTGCTTGCTTCGGGAGGCACCA
GGAGATAGTTTGTGGATGTCAGTGGGAAAGGTACATGTACATCCGTTCAG
GGGCAGTGTCAGTGTTTTTTTTTTTAAATCACGTCAAGGAGTATGCCCCC
TGCCCTTCAGAAGAAAAAAAGCCTCCGCATCTGGCGATCTGACCAGCGTA
GGAAAAGTACAGGACCTACTCACTTGCCAACCCCACGAGGTCGCCACCTC
AAGCGCTGCTTCTTCCTGGAATTGCTTCTAGATGCCCGTACGCATTTCCG
CAGCCACCTTACATGGCTGGTGTGCATAGTCTAAATAAATAGGGTCGACA
ATTGAGAGGGTGAGGAATTGGAGGAGGACGGTTGGGAGAGACGTAGCAGG
CAAAGGGGCTATCCCCGAGGTTCAAAGCTGCCGTCTGCCGCTCATATCCT
TTGGCAAGGTTCGAAAGTGTGGATCACGGAGATGTAGAAGTTACAGAACA
CCCTCAAAAGCTTAGCGTGCCCCGGGATAGTGCCAAAGAGTGGGAAGATG
AGGAGGGCAAGCAGCTCATCGAATTGCTCACCTCATCCTACTTGGGCCTA
ATGCCCACAGATAGTTTTGCCATTTCACGATGAATAAATTATTCTGTCAC
ATTGCTACCGTACCCGGAGAAGGCGCCATAAAGCAAAAATATCAAACTAA
ACTAGATACACAAACATGCCATCATATTCCGAACGTCTTATAAAAGT
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protein sequence of jgi.p|Nanoce1779_2|579449

>mRNA_2198-protein ID=mRNA_2198-protein|Name=jgi.p|Nanoce1779_2|579449|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MCHHIPPFASSNDLSTSFPPISASSLPIFCPPFFPSKKGLSALSAFTDYL
AATARVLEEVVDPGKFAAKMQTYQSLKDPVLKDLVARTEKGDVEATLALQ
QEIVNRELGDIIDLEAFGIRGLEPAAVSSLRNMIKDTEPALYKLILTDDK
IAQKFMDDPSAAYREAQALSPSLAEAAKVLASGGTRR*
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mRNA from alignment at scaffold_4:1045571..1047368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2198 ID=mRNA_2198|Name=jgi.p|Nanoce1779_2|579449|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp|location=Sequence derived from alignment at scaffold_4:1045571..1047368- (Nannochloropsis oceanica)
TACCTGACGCGCCCTTCCTGCAAGACACCTGGGCGCAAGATGATGACGGC
CTCTCGCTTATCAAACCTGCCTTTGATGGTGACGTTCTATCCGTCTTCCG
TACCTTGACCGAGAATTACAAGGACCAATTACAAGAAATCTGGGGCCAGC
CAGAGGTGGCCAAGGCGTTGTTGACCAACTTCCCCATGTTTAGTGGTATT
AAGGGCATGGCAAGCATTGCACAGAAGGAAGGGCCTTTGACGTCTGCGGA
CGTACGTCGGGAGGGAAGGATGGAGAGATGTGGATTAAGAGATGAGATAG
GGAGTTGGAATGGAGATATATGAAGGCATTATGCCATGTGCTAAATGTGT
CATCATATACCTCCCTTTGCATCGAGTAATGACCTCAGTACCTCTTTTCC
TCCCATCTCTGCCAGCTCACTTCCCATTTTCTGCCCTCCTTTCTTCCCAT
CCAAAAAGGGTCTCTCGGCCCTGAGCGCTTTCACAGACTACCTCGCCGCC
ACTGCCCGCGTCTTGGAAGAGGTCGTGGACCCCGGCAAATTCGCGGCAAA
AATGCAAACGTATCAATCACTGAAAGACCCCGTGCTGAAAGACTTGGTGG
CACGGACCGAGAAGGGAGATGTGGAGGCAACGCTGGCGTTGCAGCAAGAG
ATTGTGAATAGGGAGCTGGGCGACAGTACGTGTCTAGAATAAAGGGAGGG
TGGGAGGGAAAAAGGGAAGGCGGTTAGGAGGGTGAGATGGAGGAAGGGTC
CTTATCAGTGCGCTTGCCGTCGTGTCTTGAGCCAGAGCCCTTCTTCAGCT
TTGCTGTCTGCTTGTTTAAGATACCTGGCCCCTATTCCGTCTCTCACCCA
CTCTTCATCTCGCCTGACCCATACAGTTATTGATCTCGAAGCCTTTGGCA
TCCGCGGTTTGGAACCTGCCGCCGTCAGTAGCCTCCGAAATATGATAAAA
GACACGGAGCCAGCTTTGTACAAACTGATACTCACCGACGACAAGATCGC
GCAGAAATTCATGGATGACCCCTCGGCCGCATACCGCGAGGCGCAAGCCC
TCAGTCCATCTTTGGCGGAAGCGGCGAAGGTGCTTGCTTCGGGAGGCACC
AGGAGATAGTTTGTGGATGTCAGTGGGAAAGGTACATGTACATCCGTTCA
GGGGCAGTGTCAGTGTTTTTTTTTTTAAATCACGTCAAGGAGTATGCCCC
CTGCCCTTCAGAAGAAAAAAAGCCTCCGCATCTGGCGATCTGACCAGCGT
AGGAAAAGTACAGGACCTACTCACTTGCCAACCCCACGAGGTCGCCACCT
CAAGCGCTGCTTCTTCCTGGAATTGCTTCTAGATGCCCGTACGCATTTCC
GCAGCCACCTTACATGGCTGGTGTGCATAGTCTAAATAAATAGGGTCGAC
AATTGAGAGGGTGAGGAATTGGAGGAGGACGGTTGGGAGAGACGTAGCAG
GCAAAGGGGCTATCCCCGAGGTTCAAAGCTGCCGTCTGCCGCTCATATCC
TTTGGCAAGGTTCGAAAGTGTGGATCACGGAGATGTAGAAGTTACAGAAC
ACCCTCAAAAGCTTAGCGTGCCCCGGGATAGTGCCAAAGAGTGGGAAGAT
GAGGAGGGCAAGCAGCTCATCGAATTGCTCACCTCATCCTACTTGGGCCT
AATGCCCACAGATAGTTTTGCCATTTCACGATGAATAAATTATTCTGTCA
CATTGCTACCGTACCCGGAGAAGGCGCCATAAAGCAAAAATATCAAACTA
AACTAGATACACAAACATGCCATCATATTCCGAACGTCTTATAAAAGT
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Coding sequence (CDS) from alignment at scaffold_4:1045571..1047368-

>mRNA_2198 ID=mRNA_2198|Name=jgi.p|Nanoce1779_2|579449|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_4:1045571..1047368- (Nannochloropsis oceanica)
TTATTGATCTCGAAGCCTTTGGCATCCGCGGTTTGGAACCTGCCGCCGTC
AGTAGCCTCCGAAATATGATAAAAGACACGGAGCCAGCTTTGTACAAACT
GATACTCACCGACGACAAGATCGCGCAGAAATTCATGGATGACCCCTCGG
CCGCATACCGCGAGGCGCAAGCCCTCAGTCCATCTTTGGCGGAAGCGGCG
AAGGTGCTTGCTTCGGGAGGCACCAGGAGATAGATGTGTCATCATATACC
TCCCTTTGCATCGAGTAATGACCTCAGTACCTCTTTTCCTCCCATCTCTG
CCAGCTCACTTCCCATTTTCTGCCCTCCTTTCTTCCCATCCAAAAAGGGT
CTCTCGGCCCTGAGCGCTTTCACAGACTACCTCGCCGCCACTGCCCGCGT
CTTGGAAGAGGTCGTGGACCCCGGCAAATTCGCGGCAAAAATGCAAACGT
ATCAATCACTGAAAGACCCCGTGCTGAAAGACTTGGTGGCACGGACCGAG
AAGGGAGATGTGGAGGCAACGCTGGCGTTGCAGCAAGAGATTGTGAATAG
GGAGCTGGGCGACATTATTGATCTCGAAGCCTTTGGCATCCGCGGTTTGG
AACCTGCCGCCGTCAGTAGCCTCCGAAATATGATAAAAGACACGGAGCCA
GCTTTGTACAAACTGATACTCACCGACGACAAGATCGCGCAGAAATTCAT
GGATGACCCCTCGGCCGCATACCGCGAGGCGCAAGCCCTCAGTCCATCTT
TGGCGGAAGCGGCGAAGGTGCTTGCTTCGGGAGGCACCAGGAGATAGATG
TGTCATCATATACCTCCCTTTGCATCGAGTAATGACCTCAGTACCTCTTT
TCCTCCCATCTCTGCCAGCTCACTTCCCATTTTCTGCCCTCCTTTCTTCC
CATCCAAAAAGGGTCTCTCGGCCCTGAGCGCTTTCACAGACTACCTCGCC
GCCACTGCCCGCGTCTTGGAAGAGGTCGTGGACCCCGGCAAATTCGCGGC
AAAAATGCAAACGTATCAATCACTGAAAGACCCCGTGCTGAAAGACTTGG
TGGCACGGACCGAGAAGGGAGATGTGGAGGCAACGCTGGCGTTGCAGCAA
GAGATTGTGAATAGGGAGCTGGGCGACA
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Synonyms
Publications