jgi.p|Nanoce1779_2|579694, mRNA_2271 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579694
Unique Name	mRNA_2271
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1428
Alignment location	scaffold_4:1235885..1237312 +

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Properties


Property Name	Value
TranscriptId	579780
Track	FilteredModels2
ProteinId	579694

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1235885..1237312 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579694	gene_2271	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579694	mRNA_2271-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2271	CDS_2271	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1235885..1237312+
coding sequence from alignment at scaffold_4:1235885..1237312+

mRNA sequence

>mRNA_2271 ID=mRNA_2271|Name=jgi.p|Nanoce1779_2|579694|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp
GTGAAAGCCCGACAGCTGTGGAAATGTGGGAAGGAGGAGGATTAAAGGAA
ATAAGAGTTCTGATGGGTGAGGCCGAAGACAACAAGATGACCACGTGCAC
ATGAATATCCTGAGTATGTGAAGCTAAACCAAGGATTCGTTGGCAATTTG
CGAAGCAGCTATGGACTTGTTGCGAAATGTAAGAGCGAACAGCCCTTGGG
CGATCACTGGCGACGTGAGCAGAGCGGAGAGCAGAAGCACAAGCCTTGCC
TAGGCTGTGTAGGATCATTGTACTATGACAGACATGTATACTATGCGTGA
GGCGTTCATGCTGGAATATGCATTACCAGGAGAGGCTGCCCTGGTATACA
TGTTTACCCCACTCTCATTCACGAACGGCCCACCTTCCCCTGCCTTGCTT
TTACAGGCAACTTTCAGACCCTCACCCATCGCACCCAATTCATGGCTCCC
GCCACCTTGCCCACCGATCAAGAATCTCTCCCGCCAGCGCAGCCACGGCC
ACCGTCTCTTGCCCCCGTGCCCTCGCCCACTCTTCCCATCCCCATCCTCC
GGACCTCCGTCTCCTATACAGCCGGCGTACCCCTCCACCGTCAACTCACT
GCCGTTACCGCCGCCCAACAACGCAAAGAAGTCGATGCAGGAATAAGGTC
TGGCGGGGAATGGCGGGTGCCTCTCACGGATACCGAACGGAGGAAGGTCC
GCCAAAATATACTGGCAGCATTCAAACACCAGACCACAAGCTATGAGGAA
GTGTTAGAATTAGCGGTGGCCCTGCAAGAAGAAGCTCTACATGCCTGGGC
CCCTTCTCGGTTGGACTATATCAAAAATGCTGTACAATTTGATCGGCGTC
TGGTAGAAGCAAAGAAAAACACAGGAGAACGGGCTGCTCTAACGACATCA
GCGGCAGCGGCAGAAATGGGTAGTGGGATGGGAAAAAATGAAGAAGAGGG
GAGAGGAAAAGGGAAAAGGAGCAGGTCAGGGAAGATAAAGACGGCGACGG
CATCTATAAAGAAGCAGGAGAAAGGGGACGAAGGAGAAGCAATGAAGCGA
AAAGTGGAAGTTCCGAAAGACATCAGCGTGGAAGAGGCGGAAAAGACGGA
AGCAGAGACTGGGGTAGGCAAGAATAAGTTTAGGCGGGCATCGCGACGAA
GCATCAAGGATGCACAAGAAGAAGGAGCGGAGAAGAAAGGGGCTAATTAT
TTTGTGCCCACGAAAGCTGTGGAAGAAAAGACGAATGAATTTGCAGCAGC
AGCAGCAAGCACGATTGGCTCCCATCGAAAGCGGATCCGAAAGTAGAAAT
AGAAAGAGGGAACAGAATTCAGCGTGTACACAAAAAAATGTAGAAAGCGG
TATCAAAAGAGCTACCACAGTGGCAGCCAAACGTGTTTCGCTTCGTAGCA
AAGAGAGAAAAAGACACAACAAAGACAA

protein sequence of jgi.p|Nanoce1779_2|579694

>mRNA_2271-protein ID=mRNA_2271-protein|Name=jgi.p|Nanoce1779_2|579694|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MAPATLPTDQESLPPAQPRPPSLAPVPSPTLPIPILRTSVSYTAGVPLHR
QLTAVTAAQQRKEVDAGIRSGGEWRVPLTDTERRKVRQNILAAFKHQTTS
YEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKNTGERAAL
TTSAAAAEMGSGMGKNEEEGRGKGKRSRSGKIKTATASIKKQEKGDEGEA
MKRKVEVPKDISVEEAEKTEAETGVGKNKFRRASRRSIKDAQEEGAEKKG
ANYFVPTKAVEEKTNEFAAAAASTIGSHRKRIRK*

mRNA from alignment at scaffold_4:1235885..1237312+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2271 ID=mRNA_2271|Name=jgi.p|Nanoce1779_2|579694|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp|location=Sequence derived from alignment at scaffold_4:1235885..1237312+ (Nannochloropsis oceanica)
GTGAAAGCCCGACAGCTGTGGAAATGTGGGAAGGAGGAGGATTAAAGGAA
ATAAGAGTTCTGATGGGTGAGGCCGAAGACAACAAGATGACCACGTGCAC
ATGAATATCCTGAGTATGTGAAGCTAAACCAAGGATTCGTTGGCAATTTG
CGAAGCAGCTATGGACTTGTTGCGAAATGTAAGAGCGAACAGCCCTTGGG
CGATCACTGGCGACGTGAGCAGAGCGGAGAGCAGAAGCACAAGCCTTGCC
TAGGCTGTGTAGGATCATTGTACTATGACAGACATGTATACTATGCGTGA
GGCGTTCATGCTGGAATATGCATTACCAGGAGAGGCTGCCCTGGTATACA
TGTTTACCCCACTCTCATTCACGAACGGCCCACCTTCCCCTGCCTTGCTT
TTACAGGCAACTTTCAGACCCTCACCCATCGCACCCAATTCATGGCTCCC
GCCACCTTGCCCACCGATCAAGAATCTCTCCCGCCAGCGCAGCCACGGCC
ACCGTCTCTTGCCCCCGTGCCCTCGCCCACTCTTCCCATCCCCATCCTCC
GGACCTCCGTCTCCTATACAGCCGGCGTACCCCTCCACCGTCAACTCACT
GCCGTTACCGCCGCCCAACAACGCAAAGAAGTCGATGCAGGAATAAGGTC
TGGCGGGGAATGGCGGGTGCCTCTCACGGATACCGAACGGAGGAAGGTCC
GCCAAAATATACTGGCAGCATTCAAACACCAGACCACAAGCTATGAGGAA
GTGTTAGAATTAGCGGTGGCCCTGCAAGAAGAAGCTCTACATGCCTGGGC
CCCTTCTCGGTTGGACTATATCAAAAATGCTGTACAATTTGATCGGCGTC
TGGTAGAAGCAAAGAAAAACACAGGAGAACGGGCTGCTCTAACGACATCA
GCGGCAGCGGCAGAAATGGGTAGTGGGATGGGAAAAAATGAAGAAGAGGG
GAGAGGAAAAGGGAAAAGGAGCAGGTCAGGGAAGATAAAGACGGCGACGG
CATCTATAAAGAAGCAGGAGAAAGGGGACGAAGGAGAAGCAATGAAGCGA
AAAGTGGAAGTTCCGAAAGACATCAGCGTGGAAGAGGCGGAAAAGACGGA
AGCAGAGACTGGGGTAGGCAAGAATAAGTTTAGGCGGGCATCGCGACGAA
GCATCAAGGATGCACAAGAAGAAGGAGCGGAGAAGAAAGGGGCTAATTAT
TTTGTGCCCACGAAAGCTGTGGAAGAAAAGACGAATGAATTTGCAGCAGC
AGCAGCAAGCACGATTGGCTCCCATCGAAAGCGGATCCGAAAGTAGAAAT
AGAAAGAGGGAACAGAATTCAGCGTGTACACAAAAAAATGTAGAAAGCGG
TATCAAAAGAGCTACCACAGTGGCAGCCAAACGTGTTTCGCTTCGTAGCA
AAGAGAGAAAAAGACACAACAAAGACAA

Coding sequence (CDS) from alignment at scaffold_4:1235885..1237312+

>mRNA_2271 ID=mRNA_2271|Name=jgi.p|Nanoce1779_2|579694|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_4:1235885..1237312+ (Nannochloropsis oceanica)
ATGGCTCCCGCCACCTTGCCCACCGATCAAGAATCTCTCCCGCCAGCGCA
GCCACGGCCACCGTCTCTTGCCCCCGTGCCCTCGCCCACTCTTCCCATCC
CCATCCTCCGGACCTCCGTCTCCTATACAGCCGGCGTACCCCTCCACCGT
CAACTCACTGCCGTTACCGCCGCCCAACAACGCAAAGAAGTCGATGCAGG
AATAAGGTCTGGCGGGGAATGGCGGGTGCCTCTCACGGATACCGAACGGA
GGAAGGTCCGCCAAAATATACTGGCAGCATTCAAACACCAGACCACAAGC
TATGAGGAAGTGTTAGAATTAGCGGTGGCCCTGCAAGAAGAAGCTCTACA
TGCCTGGGCCCCTTCTCGGTTGGACTATATCAAAAATGCTGTACAATTTG
ATCGGCGTCTGGTAGAAGCAAAGAAAAACACAGGAGAACGGGCTGCTCTA
ACGACATCAGCGGCAGCGGCAGAAATGGGTAGTGGGATGGGAAAAAATGA
AGAAGAGGGGAGAGGAAAAGGGAAAAGGAGCAGGTCAGGGAAGATAAAGA
CGGCGACGGCATCTATAAAGAAGCAGGAGAAAGGGGACGAAGGAGAAGCA
ATGAAGCGAAAAGTGGAAGTTCCGAAAGACATCAGCGTGGAAGAGGCGGA
AAAGACGGAAGCAGAGACTGGGGTAGGCAAGAATAAGTTTAGGCGGGCAT
CGCGACGAAGCATCAAGGATGCACAAGAAGAAGGAGCGGAGAAGAAAGGG
GCTAATTATTTTGTGCCCACGAAAGCTGTGGAAGAAAAGACGAATGAATT
TGCAGCAGCAGCAGCAAGCACGATTGGCTCCCATCGAAAGCGGATCCGAA
AGTAG

Synonyms

Publications