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Properties
Property Name | Value |
TranscriptId | 628156 |
Track | FilteredModels2 |
ProteinId | 628070 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_4 | supercontig | scaffold_4:232671..235074 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1873 ID=mRNA_1873|Name=jgi.p|Nanoce1779_2|628070|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp CAGCAGCAGCAGCAGCAGCAGCAGTTGTAGTAGTAGTAGTTTTAGCAGTG GTAGCAGCAGTAGCAGCGATGGAAGCGCTGATCATGCTCTAACCACTGCT GCTGTTCCTGCCGCTGCTGACGTCCGTTTCCACCCGGGCTCGCCCCTCCT GAAAGCGTTTGCGGCTGCTTCATTCCCTGTCCTTGATTCTTTTGGTCCCC AGGGGTTGGCCGGTCTGGTCAATGGCTTTGCGCACCTTGATTACTGTCCG GGAGGAGGAAGGGAGCAGGGAGGGAGGGAGGGAAGGCAAGAAATGACCCG CGGGGTGGGGGAGGAGGAAGAAGAGGAGGAGGAAATAGGGGTACATCGCT TCTGCGCCCCTTCTCCTTTTTCGGGGACGCAGACGGAGGAAGCGGGACGG AGGGAAGGGTGGATGGTTGAGTACCTGCAGGCAGTGCGCAGAGCCATGCC TCGATTTAATTCACAGGATTACGGGATCGTGGTGAATGGGCTGGCGTCTC TGGGCGTGGTGCCTGAGACGTTGTCCCCCGGGTTCATGAATCAGTTGAGG GATTTGGCCGGCCCGAAACTCGGTACATTCAATGACCAGGAGCTGTCCAA CTTGATTAACGCCTTGGGGAAATGGGACCATCACCCAGGAGACGCCTTCC TCTCCTCCTTCGCCGCTGCCTGTCTCGTGCCCTCCCGCCTTTCCTCCTTC ACTGCCCAGGGACTCGCGAATGTCCTGCACGCGTTCGGGAGACTCGGGTT TTACGCCGGTGGGGAATGGATGGAGGCGTGGCTGAAGCAATGCCTGCTCG TGGAAGGAGGGGACGAAGGGAGGGGGGGAAGAAGGGTGGAAGGATTCAGC TCGCAGGGCTTGGCCATGGTGGTGTTGGGATTGAGTAACGTGCGATATGA TCCCGGAGGAGCATTCCTCGCCACCCTGACCGAAGCGGCCGTACGAAAGG CCAGTAAGTTCGACCAACAAGACTTGGCCAATATCTGGCTGGGCTGTGCG AACTTAAACCATCGCCCCTCCCCTTCGTTTTGGGAGGCATGTCGTCAAGT GATCCCCTGGCCGAAGCTCTTGTCGTCATTGTCCTTGTTTGAGGCAAGCA CGTTGTTGTACGCCTTGGCAGTGATGGATATGGAAGAGAGCCAAACCCTG ATGGGGCCCCTGGTCAAGAGGGCATGCGAAGAGATGAAGAGGACGCGGGG GAAGGCACGGGAGAGGGCAAGGAATAAAGAGATGGACCTGGAGACGGAGA GCGCGTTAAGGCAGCTACACCAGACGTTTTTGTACCTAGAGTGCTTGCGA CGGGAGCAGGGTGAGGTGGAAGAGGAGAGGGGAGGAGAGGGAAGGAGGGA CGGAGAAGAGGTGGTTGTTGGCGGGGTCAGCCTAGCAGGGCTGAGGAGCT TCGGGGATTTGATCGGAGAGGTGTGGGATGAGAGCTCGCACTTGATCAGT GTCCGGATTCGAACGTCGGCTTTCCAGAAAGATGTGCAGGTGACGGCGGA GGGATTGGGGTTGTGCTGTTTGCCCGAGGCGAGGGATGGCCCATTTACCC TGGACATGGTGGTGGTCCCTGCGCCGGCGGGGGAGTGGGAGGGTGGGAAG GAGGGCGAGGAGGCGCTGCCGTTGGTGGTGGAGGTTGACGGCCCGACGCA TTATTTGATAAATGTCCCCGAGCAGATGACAGGAACAAGTCGGTTGAAGC ACCGGCTGCTGGCGGCGCAGCGGCACCGATGGGCGGGTGTGGTTAGTATA TCGCTGCCGGAGTGGTCGCAGGGAGGGTACAGCGCCACCAAAAAGAAGAG TATTTTGTTGAAGAAGTTCCGAGAATCAGGTGTTTCGTCGCTGGCACCCT ATATGTTTACGGCTGATGGGAGGGGGCAACGGCACTGTGCACTTCTGGAA GGGACGCACCATTCGCCGTTTATGAGGCTGGAGGACGGGGAGGTGGAAGG GGGGGGGGGAGGATGGGAATGTGGCTGGTCGTATGAAGGGATTTGAGGCT ATCAGCAGCAGTGCGAAGACGAAGAATAAAGCGAAGAGCATGAAGGCTGG TACAGGTAGCGAAAGCACTCGGAGTATTAAGGCCACGACTGTGCGCAAGC GTAGCAGCAGCAGCAGCAGCAGCA back to topprotein sequence of jgi.p|Nanoce1779_2|628070 >mRNA_1873-protein ID=mRNA_1873-protein|Name=jgi.p|Nanoce1779_2|628070|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp MTRGVGEEEEEEEEIGVHRFCAPSPFSGTQTEEAGRREGWMVEYLQAVRR AMPRFNSQDYGIVVNGLASLGVVPETLSPGFMNQLRDLAGPKLGTFNDQE LSNLINALGKWDHHPGDAFLSSFAAACLVPSRLSSFTAQGLANVLHAFGR LGFYAGGEWMEAWLKQCLLVEGGDEGRGGRRVEGFSSQGLAMVVLGLSNV RYDPGGAFLATLTEAAVRKASKFDQQDLANIWLGCANLNHRPSPSFWEAC RQVIPWPKLLSSLSLFEASTLLYALAVMDMEESQTLMGPLVKRACEEMKR TRGKARERARNKEMDLETESALRQLHQTFLYLECLRREQGEVEEERGGEG RRDGEEVVVGGVSLAGLRSFGDLIGEVWDESSHLISVRIRTSAFQKDVQV TAEGLGLCCLPEARDGPFTLDMVVVPAPAGEWEGGKEGEEALPLVVEVDG PTHYLINVPEQMTGTSRLKHRLLAAQRHRWAGVVSISLPEWSQGGYSATK KKSILLKKFRESGVSSLAPYMFTADGRGQRHCALLEGTHHSPFMRLEDGE VEGGGGGWECGWSYEGI* back to topmRNA from alignment at scaffold_4:232671..235074- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1873 ID=mRNA_1873|Name=jgi.p|Nanoce1779_2|628070|organism=Nannochloropsis oceanica|type=mRNA|length=2404bp|location=Sequence derived from alignment at scaffold_4:232671..235074- (Nannochloropsis oceanica) CAGCAGCAGCAGCAGCAGCAGCAGTTGTAGTAGTAGTAGTTTTAGCAGTG
GTAGCAGCAGTAGCAGCGATGGAAGCGCTGATCATGCTCTAACCACTGCT
GCTGTTCCTGCCGCTGCTGACGTCCGTTTCCACCCGGGCTCGCCCCTCCT
GAAAGCGTTTGCGGCTGCTTCATTCCCTGTCCTTGATTCTTTTGGTCCCC
AGGGGTTGGCCGGTCTGGTCAATGGCTTTGCGCACCTTGATTACTGTCCG
GGAGGAGGAAGGGAGCAGGGAGGGAGGGAGGGAAGGCAAGAAATGACCCG
CGGGGTGGGGGAGGAGGAAGAAGAGGAGGAGGAAATAGGGGTACATCGCT
TCTGCGCCCCTTCTCCTTTTTCGGGGACGCAGACGGAGGAAGCGGGACGG
AGGGAAGGGTGGATGGTTGAGTACCTGCAGGCAGTGCGCAGAGCCATGCC
TCGATTTAATTCACAGGATTACGGGATCGTGGTGAATGGGCTGGCGTCTC
TGGGCGTGGTGCCTGAGACGTTGTCCCCCGGGTTCATGAATCAGTTGAGG
GATTTGGCCGGCCCGAAACTCGGTACATTCAATGACCAGGAGGTAGGCGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGGGACGGAAGTT
TTCCCATTGCCAGGTGTTTTGTAGTTGATGTCGTTCTATCTTCACTCCCT
CCCTCCCTTCTTACCCCCTTCCCTTGCAGCTGTCCAACTTGATTAACGCC
TTGGGGAAATGGGACCATCACCCAGGAGACGCCTTCCTCTCCTCCTTCGC
CGCTGCCTGTCTCGTGCCCTCCCGCCTTTCCTCCTTCACTGCCCAGGGAC
TCGCGAATGTCCTGCACGCGTTCGGGAGACTCGGGTTTTACGCCGGTGGG
GAATGGATGGAGGCGTGGCTGAAGCAATGCCTGCTCGTGGAAGGAGGGGA
CGAAGGGAGGGGGGGAAGAAGGGTGGAAGGATTCAGCTCGCAGGGCTTGG
CCATGGTGGTGTTGGGATTGAGTAACGTGCGATATGATCCCGGAGGAGGT
GAGTGAAGGCACTCAGGAAGGGAGGGAGGGAAGGTACACATAAAGGGCAG
ACGAAATCAGTGTTCACCCATTCCCATCTCACACACTCTCTGCTCCTTCT
TTCCTCCTTCTTTCCTTCCCTCTTCTTTCCCTTATTGGCAGCATTCCTCG
CCACCCTGACCGAAGCGGCCGTACGAAAGGCCAGTAAGTTCGACCAACAA
GACTTGGCCAATATCTGGCTGGGCTGTGCGAACTTAAACCATCGCCCCTC
CCCTTCGTTTTGGGAGGCATGTCGTCAAGTGATCCCCTGGCCGAAGCTCT
TGTCGTCATTGTCCTTGTTTGAGGCAAGCACGTTGTTGTACGCCTTGGCA
GTGATGGATATGGAAGAGAGCCAAACCCTGATGGGGCCCCTGGTCAAGAG
GGCATGCGAAGAGATGAAGAGGACGCGGGGGAAGGCACGGGAGAGGGCAA
GGAATAAAGAGATGGACCTGGAGACGGAGAGCGCGTTAAGGCAGCTACAC
CAGACGTTTTTGTACCTAGAGTGCTTGCGACGGGAGCAGGGTGAGGTGGA
AGAGGAGAGGGGAGGAGAGGGAAGGAGGGACGGAGAAGAGGTGGTTGTTG
GCGGGGTCAGCCTAGCAGGGCTGAGGAGCTTCGGGGATTTGATCGGAGAG
GTGTGGGATGAGAGCTCGCACTTGATCAGTGTCCGGATTCGAACGTCGGC
TTTCCAGAAAGATGTGCAGGTGACGGCGGAGGGATTGGGGTTGTGCTGTT
TGCCCGAGGCGAGGGATGGCCCATTTACCCTGGACATGGTGGTGGTCCCT
GCGCCGGCGGGGGAGTGGGAGGGTGGGAAGGAGGGCGAGGAGGCGCTGCC
GTTGGTGGTGGAGGTTGACGGCCCGACGCATTATTTGATAAATGTCCCCG
AGCAGATGACAGGAACAAGTCGGTTGAAGCACCGGCTGCTGGCGGCGCAG
CGGCACCGATGGGCGGGTGTGGTTAGTATATCGCTGCCGGAGTGGTCGCA
GGGAGGGTACAGCGCCACCAAAAAGAAGAGTATTTTGTTGAAGAAGTTCC
GAGAATCAGGTGTTTCGTCGCTGGCACCCTATATGTTTACGGCTGATGGG
AGGGGGCAACGGCACTGTGCACTTCTGGAAGGGACGCACCATTCGCCGTT
TATGAGGCTGGAGGACGGGGAGGTGGAAGGGGGGGGGGGAGGATGGGAAT
GTGGCTGGTCGTATGAAGGGATTTGAGGCTATCAGCAGCAGTGCGAAGAC
GAAGAATAAAGCGAAGAGCATGAAGGCTGGTACAGGTAGCGAAAGCACTC
GGAGTATTAAGGCCACGACTGTGCGCAAGCGTAGCAGCAGCAGCAGCAGC
AGCA back to topCoding sequence (CDS) from alignment at scaffold_4:232671..235074- >mRNA_1873 ID=mRNA_1873|Name=jgi.p|Nanoce1779_2|628070|organism=Nannochloropsis oceanica|type=CDS|length=5112bp|location=Sequence derived from alignment at scaffold_4:232671..235074- (Nannochloropsis oceanica) CATTCCTCGCCACCCTGACCGAAGCGGCCGTACGAAAGGCCAGTAAGTTC GACCAACAAGACTTGGCCAATATCTGGCTGGGCTGTGCGAACTTAAACCA TCGCCCCTCCCCTTCGTTTTGGGAGGCATGTCGTCAAGTGATCCCCTGGC CGAAGCTCTTGTCGTCATTGTCCTTGTTTGAGGCAAGCACGTTGTTGTAC GCCTTGGCAGTGATGGATATGGAAGAGAGCCAAACCCTGATGGGGCCCCT GGTCAAGAGGGCATGCGAAGAGATGAAGAGGACGCGGGGGAAGGCACGGG AGAGGGCAAGGAATAAAGAGATGGACCTGGAGACGGAGAGCGCGTTAAGG CAGCTACACCAGACGTTTTTGTACCTAGAGTGCTTGCGACGGGAGCAGGG TGAGGTGGAAGAGGAGAGGGGAGGAGAGGGAAGGAGGGACGGAGAAGAGG TGGTTGTTGGCGGGGTCAGCCTAGCAGGGCTGAGGAGCTTCGGGGATTTG ATCGGAGAGGTGTGGGATGAGAGCTCGCACTTGATCAGTGTCCGGATTCG AACGTCGGCTTTCCAGAAAGATGTGCAGGTGACGGCGGAGGGATTGGGGT TGTGCTGTTTGCCCGAGGCGAGGGATGGCCCATTTACCCTGGACATGGTG GTGGTCCCTGCGCCGGCGGGGGAGTGGGAGGGTGGGAAGGAGGGCGAGGA GGCGCTGCCGTTGGTGGTGGAGGTTGACGGCCCGACGCATTATTTGATAA ATGTCCCCGAGCAGATGACAGGAACAAGTCGGTTGAAGCACCGGCTGCTG GCGGCGCAGCGGCACCGATGGGCGGGTGTGGTTAGTATATCGCTGCCGGA GTGGTCGCAGGGAGGGTACAGCGCCACCAAAAAGAAGAGTATTTTGTTGA AGAAGTTCCGAGAATCAGGTGTTTCGTCGCTGGCACCCTATATGTTTACG GCTGATGGGAGGGGGCAACGGCACTGTGCACTTCTGGAAGGGACGCACCA TTCGCCGTTTATGAGGCTGGAGGACGGGGAGGTGGAAGGGGGGGGGGGAG GATGGGAATGTGGCTGGTCGTATGAAGGGATTTGACTGTCCAACTTGATT AACGCCTTGGGGAAATGGGACCATCACCCAGGAGACGCCTTCCTCTCCTC CTTCGCCGCTGCCTGTCTCGTGCCCTCCCGCCTTTCCTCCTTCACTGCCC AGGGACTCGCGAATGTCCTGCACGCGTTCGGGAGACTCGGGTTTTACGCC GGTGGGGAATGGATGGAGGCGTGGCTGAAGCAATGCCTGCTCGTGGAAGG AGGGGACGAAGGGAGGGGGGGAAGAAGGGTGGAAGGATTCAGCTCGCAGG GCTTGGCCATGGTGGTGTTGGGATTGAGTAACGTGCGATATGATCCCGGA GGAGATGACCCGCGGGGTGGGGGAGGAGGAAGAAGAGGAGGAGGAAATAG GGGTACATCGCTTCTGCGCCCCTTCTCCTTTTTCGGGGACGCAGACGGAG GAAGCGGGACGGAGGGAAGGGTGGATGGTTGAGTACCTGCAGGCAGTGCG CAGAGCCATGCCTCGATTTAATTCACAGGATTACGGGATCGTGGTGAATG GGCTGGCGTCTCTGGGCGTGGTGCCTGAGACGTTGTCCCCCGGGTTCATG AATCAGTTGAGGGATTTGGCCGGCCCGAAACTCGGTACATTCAATGACCA GGAGCATTCCTCGCCACCCTGACCGAAGCGGCCGTACGAAAGGCCAGTAA GTTCGACCAACAAGACTTGGCCAATATCTGGCTGGGCTGTGCGAACTTAA ACCATCGCCCCTCCCCTTCGTTTTGGGAGGCATGTCGTCAAGTGATCCCC TGGCCGAAGCTCTTGTCGTCATTGTCCTTGTTTGAGGCAAGCACGTTGTT GTACGCCTTGGCAGTGATGGATATGGAAGAGAGCCAAACCCTGATGGGGC CCCTGGTCAAGAGGGCATGCGAAGAGATGAAGAGGACGCGGGGGAAGGCA CGGGAGAGGGCAAGGAATAAAGAGATGGACCTGGAGACGGAGAGCGCGTT AAGGCAGCTACACCAGACGTTTTTGTACCTAGAGTGCTTGCGACGGGAGC AGGGTGAGGTGGAAGAGGAGAGGGGAGGAGAGGGAAGGAGGGACGGAGAA GAGGTGGTTGTTGGCGGGGTCAGCCTAGCAGGGCTGAGGAGCTTCGGGGA TTTGATCGGAGAGGTGTGGGATGAGAGCTCGCACTTGATCAGTGTCCGGA TTCGAACGTCGGCTTTCCAGAAAGATGTGCAGGTGACGGCGGAGGGATTG GGGTTGTGCTGTTTGCCCGAGGCGAGGGATGGCCCATTTACCCTGGACAT GGTGGTGGTCCCTGCGCCGGCGGGGGAGTGGGAGGGTGGGAAGGAGGGCG AGGAGGCGCTGCCGTTGGTGGTGGAGGTTGACGGCCCGACGCATTATTTG ATAAATGTCCCCGAGCAGATGACAGGAACAAGTCGGTTGAAGCACCGGCT GCTGGCGGCGCAGCGGCACCGATGGGCGGGTGTGGTTAGTATATCGCTGC CGGAGTGGTCGCAGGGAGGGTACAGCGCCACCAAAAAGAAGAGTATTTTG TTGAAGAAGTTCCGAGAATCAGGTGTTTCGTCGCTGGCACCCTATATGTT TACGGCTGATGGGAGGGGGCAACGGCACTGTGCACTTCTGGAAGGGACGC ACCATTCGCCGTTTATGAGGCTGGAGGACGGGGAGGTGGAAGGGGGGGGG GGAGGATGGGAATGTGGCTGGTCGTATGAAGGGATTTGACTGTCCAACTT GATTAACGCCTTGGGGAAATGGGACCATCACCCAGGAGACGCCTTCCTCT CCTCCTTCGCCGCTGCCTGTCTCGTGCCCTCCCGCCTTTCCTCCTTCACT GCCCAGGGACTCGCGAATGTCCTGCACGCGTTCGGGAGACTCGGGTTTTA CGCCGGTGGGGAATGGATGGAGGCGTGGCTGAAGCAATGCCTGCTCGTGG AAGGAGGGGACGAAGGGAGGGGGGGAAGAAGGGTGGAAGGATTCAGCTCG CAGGGCTTGGCCATGGTGGTGTTGGGATTGAGTAACGTGCGATATGATCC CGGAGGAGATGACCCGCGGGGTGGGGGAGGAGGAAGAAGAGGAGGAGGAA ATAGGGGTACATCGCTTCTGCGCCCCTTCTCCTTTTTCGGGGACGCAGAC GGAGGAAGCGGGACGGAGGGAAGGGTGGATGGTTGAGTACCTGCAGGCAG TGCGCAGAGCCATGCCTCGATTTAATTCACAGGATTACGGGATCGTGGTG AATGGGCTGGCGTCTCTGGGCGTGGTGCCTGAGACGTTGTCCCCCGGGTT CATGAATCAGTTGAGGGATTTGGCCGGCCCGAAACTCGGTACATTCAATG ACCAGGAGCATTCCTCGCCACCCTGACCGAAGCGGCCGTACGAAAGGCCA GTAAGTTCGACCAACAAGACTTGGCCAATATCTGGCTGGGCTGTGCGAAC TTAAACCATCGCCCCTCCCCTTCGTTTTGGGAGGCATGTCGTCAAGTGAT CCCCTGGCCGAAGCTCTTGTCGTCATTGTCCTTGTTTGAGGCAAGCACGT TGTTGTACGCCTTGGCAGTGATGGATATGGAAGAGAGCCAAACCCTGATG GGGCCCCTGGTCAAGAGGGCATGCGAAGAGATGAAGAGGACGCGGGGGAA GGCACGGGAGAGGGCAAGGAATAAAGAGATGGACCTGGAGACGGAGAGCG CGTTAAGGCAGCTACACCAGACGTTTTTGTACCTAGAGTGCTTGCGACGG GAGCAGGGTGAGGTGGAAGAGGAGAGGGGAGGAGAGGGAAGGAGGGACGG AGAAGAGGTGGTTGTTGGCGGGGTCAGCCTAGCAGGGCTGAGGAGCTTCG GGGATTTGATCGGAGAGGTGTGGGATGAGAGCTCGCACTTGATCAGTGTC CGGATTCGAACGTCGGCTTTCCAGAAAGATGTGCAGGTGACGGCGGAGGG ATTGGGGTTGTGCTGTTTGCCCGAGGCGAGGGATGGCCCATTTACCCTGG ACATGGTGGTGGTCCCTGCGCCGGCGGGGGAGTGGGAGGGTGGGAAGGAG GGCGAGGAGGCGCTGCCGTTGGTGGTGGAGGTTGACGGCCCGACGCATTA TTTGATAAATGTCCCCGAGCAGATGACAGGAACAAGTCGGTTGAAGCACC GGCTGCTGGCGGCGCAGCGGCACCGATGGGCGGGTGTGGTTAGTATATCG CTGCCGGAGTGGTCGCAGGGAGGGTACAGCGCCACCAAAAAGAAGAGTAT TTTGTTGAAGAAGTTCCGAGAATCAGGTGTTTCGTCGCTGGCACCCTATA TGTTTACGGCTGATGGGAGGGGGCAACGGCACTGTGCACTTCTGGAAGGG ACGCACCATTCGCCGTTTATGAGGCTGGAGGACGGGGAGGTGGAAGGGGG GGGGGGAGGATGGGAATGTGGCTGGTCGTATGAAGGGATTTGACTGTCCA ACTTGATTAACGCCTTGGGGAAATGGGACCATCACCCAGGAGACGCCTTC CTCTCCTCCTTCGCCGCTGCCTGTCTCGTGCCCTCCCGCCTTTCCTCCTT CACTGCCCAGGGACTCGCGAATGTCCTGCACGCGTTCGGGAGACTCGGGT TTTACGCCGGTGGGGAATGGATGGAGGCGTGGCTGAAGCAATGCCTGCTC GTGGAAGGAGGGGACGAAGGGAGGGGGGGAAGAAGGGTGGAAGGATTCAG CTCGCAGGGCTTGGCCATGGTGGTGTTGGGATTGAGTAACGTGCGATATG ATCCCGGAGGAGATGACCCGCGGGGTGGGGGAGGAGGAAGAAGAGGAGGA GGAAATAGGGGTACATCGCTTCTGCGCCCCTTCTCCTTTTTCGGGGACGC AGACGGAGGAAGCGGGACGGAGGGAAGGGTGGATGGTTGAGTACCTGCAG GCAGTGCGCAGAGCCATGCCTCGATTTAATTCACAGGATTACGGGATCGT GGTGAATGGGCTGGCGTCTCTGGGCGTGGTGCCTGAGACGTTGTCCCCCG GGTTCATGAATCAGTTGAGGGATTTGGCCGGCCCGAAACTCGGTACATTC AATGACCAGGAG back to top
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