jgi.p|Nanoce1779_2|642993, mRNA_9865 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|642993
Unique Name	mRNA_9865
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	657
Alignment location	scaffold_45:84044..86825 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	643079
Track	FilteredModels2
ProteinId	642993

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_45	supercontig	scaffold_45:84044..86825 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642993	gene_9865	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642993	mRNA_9865-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9865	CDS_9865	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_45:84044..86825+
coding sequence from alignment at scaffold_45:84044..86825+

mRNA sequence

>mRNA_9865 ID=mRNA_9865|Name=jgi.p|Nanoce1779_2|642993|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
ATGCATGTGCTGCGCCGCGCATACCGTACCGACGCACCTACCACTGCCTT
TCTTCTCTCTCTGAGGGAAAAAGATGCCAAGGAGGTAGCGAACCGTTGCC
TCACCCCGCTCCTCGAGACAGTGGTGGATACGAACGATAGGCTGCAGGCT
GCGGGGGCTCAGCCTCCTGCACGTCCTTCCATCTTCCGTTTGAAAAAACG
CCCGAGAGTGCCGTTGAAGACTTATCTGGGTCGACTAGTAGAGGCCACGG
GCTGCTCGACCAAGTGCCTTATCACCGCCCTAATCTACCTCGATCGCGTC
TCGGCGAAAGAATATCCATCTACCTTCACAATCCACCGATTGCTCCTCGC
CTCCCTCCTGCTCGCGGACAAGCACACGGGCGATGGGAGCGGCTGCAAAG
GCTGGTCATACCTTACGTACGCTCAAGCGGCCGGGGTGCCAGAGAGTGAA
CTGAAGGTCCTGGAGGTGGAGATGCTTCGCATGCTGCGCTATGACCTAAC
CGTCCCTCCTCCTCAACTCCTCGCCTATGGCACCAAGATATTCCAATACA
AAAGTTTATCCGCTGAATTTCCTTCTCTCTTCCTCTTCGTTGATTCTTTG
GTCCTCGTCATAGTCCGCATGACTGTGTCAGTACGTATTGCGTCCTCTGT
CATTTAA

protein sequence of jgi.p|Nanoce1779_2|642993

>mRNA_9865-protein ID=mRNA_9865-protein|Name=jgi.p|Nanoce1779_2|642993|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MHVLRRAYRTDAPTTAFLLSLREKDAKEVANRCLTPLLETVVDTNDRLQA
AGAQPPARPSIFRLKKRPRVPLKTYLGRLVEATGCSTKCLITALIYLDRV
SAKEYPSTFTIHRLLLASLLLADKHTGDGSGCKGWSYLTYAQAAGVPESE
LKVLEVEMLRMLRYDLTVPPPQLLAYGTKIFQYKSLSAEFPSLFLFVDSL
VLVIVRMTVSVRIASSVI*

mRNA from alignment at scaffold_45:84044..86825+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9865 ID=mRNA_9865|Name=jgi.p|Nanoce1779_2|642993|organism=Nannochloropsis oceanica|type=mRNA|length=2782bp|location=Sequence derived from alignment at scaffold_45:84044..86825+ (Nannochloropsis oceanica)
ATGCATGTGCTGCGCCGCGCATACCGTACCGGTACTTGCTGTCGTGGTGA
CCGCTACCCAGAGGCGAAGGAGCGACGATAATTGCACCGGACTTGTGCGT
ATTTGTGGTGTGAATGCTGTGTGAGGGCATGACTGCGTTTCTGAGTGTTT
GAGGGGTTTGTGTGTGCAAACATTGATTGATGTATACACAGCTCCGTCAA
CCTCCCGTCCCCCGTCGTCGTCGTTGCCTCGCTTCCTCTTCCTCCATTGC
CCCCTCTCCTCTCCCTCCCCCTTCTCGATCCCACGCATTACCTGCATTCT
CACATTCTCTCTTCACTCTTTCAAATCGTATCAGAGACAGAAAGGGTGCA
GGTGCAGGGTCCTCTCTCCAGTCTTTCCTGGGCCTTGTCCGTAGCGACAA
CAGCAGCCGCAGCAGCCGCAGCAGCAGCAGCAGCGTAGCAGCAGCAGCAA
CATGATGGAGACACATCAATCAAAAAGGAGAAGGATCAATAGCATTCCAT
CATCGCCACCACACTCCTCCCGTCTCTGCCTCTCCCTCCTCCTCTTCCTC
GTCTCCTCCCTCGCCTCCGCTGCTGTCTATAGCTCAGATAGCTACCCTTC
TCCTCCTCCCCCTCCCCCTCCTCCTTCTCCCCCATCTCCTCCTTCCCAAC
ACTATCCCTCCTATTACAGCTACCCTAATCCTCCACCTCATCCTCTTCCG
TCTCCTCACCACCAACTACATGAACAACACCAACTCTCCTCCTTCTCCCA
AGCCCCTCCTCCTCCTCCTCCTCCACCACCACTCCCCTCATTCCCCCCGC
CCTTTGCCCTCCCCTCCCCTCCAACGGCAGACGCACCTACCACTGCCTTT
CTTCTCTCTCTGAGGGAAAAAGATGCCAAGGAGGTAGCGAACCGTTGCCT
CACCCCGCTCCTCGAGACAGTGGTGGATACGAACGATAGGCTGCAGGCTG
CGGGGGCTCAGCCTCCTGCACGTCCTTCCATCTTCCGTTTGAAAAAACGC
CCGAGAGTGCCGTTGAAGACTTATCTGGGTCGACTAGTAGAGTACGGAGG
GAAGGAGGGAGAGAGGGATGGAGGAAAGGAAGGAAAGGAAGGAAAGGAAG
GAAGGAAAGGAGGGAGGGAGGAAAAAGATTTCTGAGGGAGGAGGTTTCGC
TTAGTTCTGAATCCCTCCATAAGTCCGCCCCTTCCTCTCTCCCGAAGTAG
TTTGCGAAAGAGGGCTAAAGATCGATCTGTTCTATGTCTGATCAGCATCT
CCCACTCCCTCCCTACCTCCCTTCCTCCCTGCCGATGCCGATAGGGCCAC
GGGCTGCTCGACCAAGTGCCTTATCACCGCCCTAATCTACCTCGATCGCG
TCTCGGCGAAAGAATATCCATCTACCTTCACAATCCACCGGTATCTTTCC
GCCCTCCCTCCCTCCTTACCTCCTCCCTCCCTGCCTTTTGCATTTTCTTC
CTTCCTCCCTTCCTTCCTGTTCTCCCCTCCTTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCTTCCGTCCCTTTACCTCCGACCCTTGCTGCTGTGGAAT
TAAAATACTACCTCTCTCCTGCCCTCCTTCCTTTCTGCCTTCTCTCCCTC
CCGCAGATTGCTCCTCGCCTCCCTCCTGCTCGCGGACAAGCACACGGGCG
ATGGGAGCGGCTGCAAAGGCTGGTCATACCTTACGTACGCTCAAGCGGCC
GGGGTGCCAGAGAGTGAACTGAAGGTACACAGCTATCATCCACTCCCTCC
CTCCCTCCCTCCCTGCCTCCCTCCCTCCCTCCGAGTCGTCGAGTCCGTCC
CCACCACTGCAGTCACCTACTGGTTAACCCTAACCCCTTCCTCCCTCCCT
CTTCCCTCCCTCTTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCTCTGTCT
CCCTCGCTCAGGTCCTGGAGGTGGAGATGCTTCGCATGCTGCGCTATGAC
CTAACCGTCCCTCCTCCTCAACTCCTCGCCTATGGCACCAAGATATTCCA
ATACAAAAGTTTATCCGTATTTCGGCAAGAAAGTCCCTGAGGCTCCCTCC
CTCCCTCCCTCTCCCCCTCCCTCCCTCCCTCCGGTCGCTTCTCGTCCCTC
TTTGTCGTCCTCCTTCCGATCGCCTCACCTACGGCACGGAAAACACCACA
ACATTAACTTTAAATTAACGGTAAGAATAAAGACATACAAAGAGACAAAA
AGTGATCACTCAAGAATTTGGAAGGTTGTGGCTTATCGGTCTATCTCCCG
ACACTCAAAATAATAGTTATTTTACATGTCATGTAATTGTTGGAAAAGAA
TGCGAACGAAAGCCTGTCCGTTGCTCACCAGCTTCTATGAATGTGAGAGA
AGGAAGAGAATGAAAGGGAGAAGGGAGGATGACGTGCGCCGAGGAGGGCG
AACGCGATGGGGGTCATTTGACTCGAAGAAAGACGACGAAAAAGACAAGA
AGGACGGGCATTAAAGAATTCATGTATTGTGACAGAGGGATAGAGACCGA
GAGAGATGGAGGTAAAGGGATAGATAGATAAATAAAGTAAGAGAATGGAA
ATTGTGCCTCCGCTTGAAGCTTTGAATCTTCCGCTCGTGCGTCAGATTTG
TTCTTTCATTCAACTCTGTTCTTTCCCTTTTCGCTTCTTCTCTCCCACTG
ACTATCCCTCCGATATCGCGCCTCTCTTTCTCTCAGGCTGAATTTCCTTC
TCTCTTCCTCTTCGTTGATTCTTTGGTCCTCGTCATAGTCCGCATGACTG
TGTCAGTACGTATTGCGTCCTCTGTCATTTAA

Coding sequence (CDS) from alignment at scaffold_45:84044..86825+

>mRNA_9865 ID=mRNA_9865|Name=jgi.p|Nanoce1779_2|642993|organism=Nannochloropsis oceanica|type=CDS|length=3942bp|location=Sequence derived from alignment at scaffold_45:84044..86825+ (Nannochloropsis oceanica)
ATGCATGTGCTGCGCCGCGCATACCGTACCGACGCACCTACCACTGCCTT
TCTTCTCTCTCTGAGGGAAAAAGATGCCAAGGAGGTAGCGAACCGTTGCC
TCACCCCGCTCCTCGAGACAGTGGTGGATACGAACGATAGGCTGCAGGCT
GCGGGGGCTCAGCCTCCTGCACGTCCTTCCATCTTCCGTTTGAAAAAACG
CCCGAGAGTGCCGTTGAAGACTTATCTGGGTCGACTAGTAGAGGCCACGG
GCTGCTCGACCAAGTGCCTTATCACCGCCCTAATCTACCTCGATCGCGTC
TCGGCGAAAGAATATCCATCTACCTTCACAATCCACCGATTGCTCCTCGC
CTCCCTCCTGCTCGCGGACAAGCACACGGGCGATGGGAGCGGCTGCAAAG
GCTGGTCATACCTTACGTACGCTCAAGCGGCCGGGGTGCCAGAGAGTGAA
CTGAAGGTCCTGGAGGTGGAGATGCTTCGCATGCTGCGCTATGACCTAAC
CGTCCCTCCTCCTCAACTCCTCGCCTATGGCACCAAGATATTCCAATACA
AAAGTTTATCCGCTGAATTTCCTTCTCTCTTCCTCTTCGTTGATTCTTTG
GTCCTCGTCATAGTCCGCATGACTGTGTCAGTACGTATTGCGTCCTCTGT
CATTTAAATGCATGTGCTGCGCCGCGCATACCGTACCGACGCACCTACCA
CTGCCTTTCTTCTCTCTCTGAGGGAAAAAGATGCCAAGGAGGTAGCGAAC
CGTTGCCTCACCCCGCTCCTCGAGACAGTGGTGGATACGAACGATAGGCT
GCAGGCTGCGGGGGCTCAGCCTCCTGCACGTCCTTCCATCTTCCGTTTGA
AAAAACGCCCGAGAGTGCCGTTGAAGACTTATCTGGGTCGACTAGTAGAG
GCCACGGGCTGCTCGACCAAGTGCCTTATCACCGCCCTAATCTACCTCGA
TCGCGTCTCGGCGAAAGAATATCCATCTACCTTCACAATCCACCGATTGC
TCCTCGCCTCCCTCCTGCTCGCGGACAAGCACACGGGCGATGGGAGCGGC
TGCAAAGGCTGGTCATACCTTACGTACGCTCAAGCGGCCGGGGTGCCAGA
GAGTGAACTGAAGGTCCTGGAGGTGGAGATGCTTCGCATGCTGCGCTATG
ACCTAACCGTCCCTCCTCCTCAACTCCTCGCCTATGGCACCAAGATATTC
CAATACAAAAGTTTATCCGCTGAATTTCCTTCTCTCTTCCTCTTCGTTGA
TTCTTTGGTCCTCGTCATAGTCCGCATGACTGTGTCAGTACGTATTGCGT
CCTCTGTCATTTAAATGCATGTGCTGCGCCGCGCATACCGTACCGACGCA
CCTACCACTGCCTTTCTTCTCTCTCTGAGGGAAAAAGATGCCAAGGAGGT
AGCGAACCGTTGCCTCACCCCGCTCCTCGAGACAGTGGTGGATACGAACG
ATAGGCTGCAGGCTGCGGGGGCTCAGCCTCCTGCACGTCCTTCCATCTTC
CGTTTGAAAAAACGCCCGAGAGTGCCGTTGAAGACTTATCTGGGTCGACT
AGTAGAGGCCACGGGCTGCTCGACCAAGTGCCTTATCACCGCCCTAATCT
ACCTCGATCGCGTCTCGGCGAAAGAATATCCATCTACCTTCACAATCCAC
CGATTGCTCCTCGCCTCCCTCCTGCTCGCGGACAAGCACACGGGCGATGG
GAGCGGCTGCAAAGGCTGGTCATACCTTACGTACGCTCAAGCGGCCGGGG
TGCCAGAGAGTGAACTGAAGGTCCTGGAGGTGGAGATGCTTCGCATGCTG
CGCTATGACCTAACCGTCCCTCCTCCTCAACTCCTCGCCTATGGCACCAA
GATATTCCAATACAAAAGTTTATCCGCTGAATTTCCTTCTCTCTTCCTCT
TCGTTGATTCTTTGGTCCTCGTCATAGTCCGCATGACTGTGTCAGTACGT
ATTGCGTCCTCTGTCATTTAAATGCATGTGCTGCGCCGCGCATACCGTAC
CGACGCACCTACCACTGCCTTTCTTCTCTCTCTGAGGGAAAAAGATGCCA
AGGAGGTAGCGAACCGTTGCCTCACCCCGCTCCTCGAGACAGTGGTGGAT
ACGAACGATAGGCTGCAGGCTGCGGGGGCTCAGCCTCCTGCACGTCCTTC
CATCTTCCGTTTGAAAAAACGCCCGAGAGTGCCGTTGAAGACTTATCTGG
GTCGACTAGTAGAGGCCACGGGCTGCTCGACCAAGTGCCTTATCACCGCC
CTAATCTACCTCGATCGCGTCTCGGCGAAAGAATATCCATCTACCTTCAC
AATCCACCGATTGCTCCTCGCCTCCCTCCTGCTCGCGGACAAGCACACGG
GCGATGGGAGCGGCTGCAAAGGCTGGTCATACCTTACGTACGCTCAAGCG
GCCGGGGTGCCAGAGAGTGAACTGAAGGTCCTGGAGGTGGAGATGCTTCG
CATGCTGCGCTATGACCTAACCGTCCCTCCTCCTCAACTCCTCGCCTATG
GCACCAAGATATTCCAATACAAAAGTTTATCCGCTGAATTTCCTTCTCTC
TTCCTCTTCGTTGATTCTTTGGTCCTCGTCATAGTCCGCATGACTGTGTC
AGTACGTATTGCGTCCTCTGTCATTTAAATGCATGTGCTGCGCCGCGCAT
ACCGTACCGACGCACCTACCACTGCCTTTCTTCTCTCTCTGAGGGAAAAA
GATGCCAAGGAGGTAGCGAACCGTTGCCTCACCCCGCTCCTCGAGACAGT
GGTGGATACGAACGATAGGCTGCAGGCTGCGGGGGCTCAGCCTCCTGCAC
GTCCTTCCATCTTCCGTTTGAAAAAACGCCCGAGAGTGCCGTTGAAGACT
TATCTGGGTCGACTAGTAGAGGCCACGGGCTGCTCGACCAAGTGCCTTAT
CACCGCCCTAATCTACCTCGATCGCGTCTCGGCGAAAGAATATCCATCTA
CCTTCACAATCCACCGATTGCTCCTCGCCTCCCTCCTGCTCGCGGACAAG
CACACGGGCGATGGGAGCGGCTGCAAAGGCTGGTCATACCTTACGTACGC
TCAAGCGGCCGGGGTGCCAGAGAGTGAACTGAAGGTCCTGGAGGTGGAGA
TGCTTCGCATGCTGCGCTATGACCTAACCGTCCCTCCTCCTCAACTCCTC
GCCTATGGCACCAAGATATTCCAATACAAAAGTTTATCCGCTGAATTTCC
TTCTCTCTTCCTCTTCGTTGATTCTTTGGTCCTCGTCATAGTCCGCATGA
CTGTGTCAGTACGTATTGCGTCCTCTGTCATTTAAATGCATGTGCTGCGC
CGCGCATACCGTACCGACGCACCTACCACTGCCTTTCTTCTCTCTCTGAG
GGAAAAAGATGCCAAGGAGGTAGCGAACCGTTGCCTCACCCCGCTCCTCG
AGACAGTGGTGGATACGAACGATAGGCTGCAGGCTGCGGGGGCTCAGCCT
CCTGCACGTCCTTCCATCTTCCGTTTGAAAAAACGCCCGAGAGTGCCGTT
GAAGACTTATCTGGGTCGACTAGTAGAGGCCACGGGCTGCTCGACCAAGT
GCCTTATCACCGCCCTAATCTACCTCGATCGCGTCTCGGCGAAAGAATAT
CCATCTACCTTCACAATCCACCGATTGCTCCTCGCCTCCCTCCTGCTCGC
GGACAAGCACACGGGCGATGGGAGCGGCTGCAAAGGCTGGTCATACCTTA
CGTACGCTCAAGCGGCCGGGGTGCCAGAGAGTGAACTGAAGGTCCTGGAG
GTGGAGATGCTTCGCATGCTGCGCTATGACCTAACCGTCCCTCCTCCTCA
ACTCCTCGCCTATGGCACCAAGATATTCCAATACAAAAGTTTATCCGCTG
AATTTCCTTCTCTCTTCCTCTTCGTTGATTCTTTGGTCCTCGTCATAGTC
CGCATGACTGTGTCAGTACGTATTGCGTCCTCTGTCATTTAA

Synonyms

Publications