jgi.p|Nanoce1779_2|580006, mRNA_2335 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580006
Unique Name	mRNA_2335
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1713
Alignment location	scaffold_5:79946..82639 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580092
Track	FilteredModels2
ProteinId	580006

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:79946..82639 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580006	gene_2335	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580006	mRNA_2335-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2335	CDS_2335	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:79946..82639+
coding sequence from alignment at scaffold_5:79946..82639+

mRNA sequence

>mRNA_2335 ID=mRNA_2335|Name=jgi.p|Nanoce1779_2|580006|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp
ACAGGCTATCAAAACAACCATCTACACATCCCATTAATCGAAAATGACAC
CCAAAAAGGATGCAGGCGGTCTCCTCGACATTGAGAAGCAGTTCACATTC
TACGCTGCCTATCACGACAATGCACTCAACAAATGGATCCACATCTTCTG
TATCTGGCCTTTGCTTTTTACCGCCCTCATCCTCTTATGGAAGATCCCCG
TCGGGCTCCTCCAGAACGCCATCCTCCCTCCTGCCGTCGCCGCTAAGTTA
TCGGTGCATGGCGTGCAGTTGACGGTCAACTGGGCCTTGGTGGGAGCCGT
GATTTACATTCTGTTCTACTTGTCGTTGGAGGCAAAGAATACCCAAAAGA
TGACGGGCCTGGGAGTCTTCGCGGCCCTGCTTGTCGGTGCACTGTACTTC
GTGGCGGGCTACGTCTCCTCTCTTCCTCCAATTTACATTCCTCATGGCAA
GGGTATCGAAATAAATGTCACTCACGCCGTGATGGCTATTCATGTCATGT
GCTGGATCGCCCAATTTGTTGGCCACTTTGTTTTCGAAGGCCGGGCCCCG
GCGTTGATGACCAACCTCTACCAGGCCTTCTTGATGGCCCCTATTTTCGT
TCTCATGGAGATGGTGTTTCTCGCGGGCGGGAAGAAGAAGCTGTATAAGT
CCATCGCCGCAAAGGTCAAGGAGGAGCTCGCCGCCTTTGAAATTCAAAAG
GCAATTTCAAGCGGTGCCGGTCGAGTCACGCGCTCCAAGAGCAAAAGGGC
GTAAGATACGGGAGGACGGGATGGAGGGATGACAGGCTTTTGGAGGTAGG
CACGAATAGTAGGATAATGCCTGTAGAAAGTGAATTGAGGGAGGAAGGGC
GGGAGGGCGAGAGGGCTAACGAATGCTATATATACAGAGATACACCTGAA
TATCTCAATGGATGTCTGAGTGTGCGTCCCGGAGGCGCATGACATGAGTG
CGAGTGACATTGACCGTTCCATCGAGTGACAGAAAAGGAGGTGGAAACGA
CGCTGAGAAGAAATGAAAAAAAGTGTGTGCCAAGCGAGGCAGAGCAAAAA
TAGGTATGGAAGACCGTGTAGAAGAGAGGGAGAATGAGTTGTGAGTCAAG
GCGCGCAGACACGGAGCATAGAAATATTGAAGAAAGTTTAACGCCGTGAA
GGTTGCCAGGCAAAAGAAAAGAAAGGGGAGGATAAAAACAAAGCATTTTT
TTAATATTTATTTCGGAGGTAACGTAGAAGGGAGGGAGGAAGGGAGGAAA
AGCAGGCATTATGCAAGTGCTATTGTAAACAATGGATCATTTGAGGAGGA
TGTGAGGATATTTATTATTTTTTTCCTAAGCTGAATAAGGACAACATGAT
ATCGATCCAGCAAGCAAGGGCGAAAAATAGAAGGGCGAGAAGGTGTGCTT
TCAATCATCGAGACACTGCATCCCATCAGTACCACTCCAAAACAACGAGC
ACTTGGACCGACTTACCATTGCATGGCCCTTCCTTTTTCCCCCCCTCCTA
TCAAGGAGCGGCAAGCCTCTTTCTTTATTTAAACAAATATGTGAAATTAT
TTTCCATCAACACGTGTCAATTCAACTATCCACGACGCTCGAAGGGAAGG
CGTTCGGGTAAAGGAAACGCCGCCCTGTAAGCAGTCTCAAATTACCAAAG
CAAAAAGGCGTGAGGTGAGATCGCGTGGTCACAGGCAAGCGAGCGTCGGG
CAAGTACTTTCCA

protein sequence of jgi.p|Nanoce1779_2|580006

>mRNA_2335-protein ID=mRNA_2335-protein|Name=jgi.p|Nanoce1779_2|580006|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MTPKKDAGGLLDIEKQFTFYAAYHDNALNKWIHIFCIWPLLFTALILLWK
IPVGLLQNAILPPAVAAKLSVHGVQLTVNWALVGAVIYILFYLSLEAKNT
QKMTGLGVFAALLVGALYFVAGYVSSLPPIYIPHGKGIEINVTHAVMAIH
VMCWIAQFVGHFVFEGRAPALMTNLYQAFLMAPIFVLMEMVFLAGGKKKL
YKSIAAKVKEELAAFEIQKAISSGAGRVTRSKSKRA*

mRNA from alignment at scaffold_5:79946..82639+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2335 ID=mRNA_2335|Name=jgi.p|Nanoce1779_2|580006|organism=Nannochloropsis oceanica|type=mRNA|length=2694bp|location=Sequence derived from alignment at scaffold_5:79946..82639+ (Nannochloropsis oceanica)
ACAGGCTATCAAAACAACCATCTACACATCCCATTAATCGAAAATGACAC
CCAAAAAGGATGCAGGCGGTCTCCTCGACATTGAGAAGCAGGTGCGTTTT
TGCTAGCAGCAGGGATGAGGGGAGCTGTGACACAACATGAACGGGGTTCT
GTGGATCGACAAGCAGCAAATGAGTGATGGTTGGACGGCGCAAATGGATT
CTTATCTCTGTATGGCCAACCCCATCGTTTAAGTCTACCCCACCTTCAGC
TTTCTTCTCTGCCCTAGCCACCGAGCTGCTAAATTTTCATCCCAAGCCAC
GGGCCATCTGGACAACCGTGTCGCTCAATGGGCTATCATCCTCCTTCGCC
CCTAACACCTACATGCATTCCCATACCACCAATAGTTCACATTCTACGCT
GCCTATCACGACAATGCACTCAACAAATGGATCCACATCTTCTGTATCTG
GCCTTTGCTTTTTACCGCCCTCATCCTCTTATGGAAGATCCCCGTCGGGC
TCCTCCAGAACGCCATCCTCCCTCCTGCCGTCGCCGCTAAGTTATCGGTG
CATGGCGTGCAGTTGACGGTCAACTGGGCCTTGGTGGGAGCCGTGATTTA
CATTCTGTTCTACTTGTCGTTGGAGGCAAAGAATACCCAAAAGATGACGG
GCCTGGGAGTCTTCGCGGTAGGCTGTGGTTGGAAGTGAAGGGAGGGAAGG
AAGGAGAGAGGGATGAAGATCAGCCGATAGACAAAGCATGGGCAGAGAGG
AAGCCACAAACAATTAATTTTCTAGTATCGTCAGATTTTACCACCAGTCT
CTCTCTAACTCACGTAGGCCCTGCTTGTCGGTGCACTGTACTTCGTGGCG
GGCTACGTCTCCTCTCTTCCTCCAATTTACATTCCTCATGGCAAGGGTAT
CGAAATAAATGTCACTCACGCCGTGATGGCTATTCATGTAAGTGGCATTA
ACCCTTCTTCCCTCCCTTCCTCTAAAAGGAATCGGACTGCAACCCCTTAT
ATCTTCATCTCATTTCTTCCCCCCCCTTCCCTTATTGATTTTAAACAGGT
CATGTGCTGGATCGCCCAATTTGTTGGCCACTTTGTTTTCGAAGGCCGGG
CCCCGGCGTTGATGACCAACCTCTACCAGGCAAGATTTCCCTTCCTGATT
TCCCTCCCTTGCGCCCTCCATCCTTCTCCCCCTTCCTGTTCCTGTCCACC
AGCCCTGTTTCCTGTCATTCGTTGCTCTCTCACTCCTTCTTGCTATTCCA
TTTTTATAATTACCCTTGGCTTCCCCCCCCACTTTGTATTTCTTATTCCT
CCCTCATTTTCTGCCTCCCTCTTCCCCTCGCCCAGGCCTTCTTGATGGCC
CCTATTTTCGTTCTCATGGAGATGGTGTTTCTCGCGGGCGGGAAGAAGAA
GCTGTATAAGGTAAATAGCAAGGGAGAAAAAGCAGATAAATTGACGGGAG
AGTATGAGGAAAAGGAGGGCGAGAGTGTCCTGAAGATTTTCCGCAACGGA
AAGGACAAAGGCGAGGCTTTAAACGGTCAAAATTAAAATCTGAGCAGCTC
ATGTGACCCTTCAACTTAAACTATCTCCTCTCCTTCCCTCCTCCCCTCCC
TCCTTCCCTACTCCCTCTCGTCATCCCTAGTCCATCGCCGCAAAGGTCAA
GGAGGAGCTCGCCGCCTTTGAAATTCAAAAGGCAATTTCAAGCGGTGCCG
GTCGAGTCACGCGCTCCAAGAGCAAAAGGGCGTAAGATACGGGAGGACGG
GATGGAGGGATGACAGGCTTTTGGAGGTAGGCACGAATAGTAGGATAATG
CCTGTAGAAAGTGAATTGAGGGAGGAAGGGCGGGAGGGCGAGAGGGCTAA
CGAATGCTATATATACAGAGATACACCTGAATATCTCAATGGATGTCTGA
GTGTGCGTCCCGGAGGCGCATGACATGAGTGCGAGTGACATTGACCGTTC
CATCGAGTGACAGAAAAGGAGGTGGAAACGACGCTGAGAAGAAATGAAAA
AAAGTGTGTGCCAAGCGAGGCAGAGCAAAAATAGGTATGGAAGACCGTGT
AGAAGAGAGGGAGAATGAGTTGTGAGTCAAGGCGCGCAGACACGGAGCAT
AGAAATATTGAAGAAAGTTTAACGCCGTGAAGGTTGCCAGGCAAAAGAAA
AGAAAGGGGAGGATAAAAACAAAGCATTTTTTTAATATTTATTTCGGAGG
TAACGTAGAAGGGAGGGAGGAAGGGAGGAAAAGCAGGCATTATGCAAGTG
CTATTGTAAACAATGGATCATTTGAGGAGGATGTGAGGATATTTATTATT
TTTTTCCTAAGCTGAATAAGGACAACATGATATCGATCCAGCAAGCAAGG
GCGAAAAATAGAAGGGCGAGAAGGTGTGCTTTCAATCATCGAGACACTGC
ATCCCATCAGTACCACTCCAAAACAACGAGCACTTGGACCGACTTACCAT
TGCATGGCCCTTCCTTTTTCCCCCCCTCCTATCAAGGAGCGGCAAGCCTC
TTTCTTTATTTAAACAAATATGTGAAATTATTTTCCATCAACACGTGTCA
ATTCAACTATCCACGACGCTCGAAGGGAAGGCGTTCGGGTAAAGGAAACG
CCGCCCTGTAAGCAGTCTCAAATTACCAAAGCAAAAAGGCGTGAGGTGAG
ATCGCGTGGTCACAGGCAAGCGAGCGTCGGGCAAGTACTTTCCA

Coding sequence (CDS) from alignment at scaffold_5:79946..82639+

>mRNA_2335 ID=mRNA_2335|Name=jgi.p|Nanoce1779_2|580006|organism=Nannochloropsis oceanica|type=CDS|length=4266bp|location=Sequence derived from alignment at scaffold_5:79946..82639+ (Nannochloropsis oceanica)
ATGACACCCAAAAAGGATGCAGGCGGTCTCCTCGACATTGAGAAGCAGTT
CACATTCTACGCTGCCTATCACGACAATGCACTCAACAAATGGATCCACA
TCTTCTGTATCTGGCCTTTGCTTTTTACCGCCCTCATCCTCTTATGGAAG
ATCCCCGTCGGGCTCCTCCAGAACGCCATCCTCCCTCCTGCCGTCGCCGC
TAAGTTATCGGTGCATGGCGTGCAGTTGACGGTCAACTGGGCCTTGGTGG
GAGCCGTGATTTACATTCTGTTCTACTTGTCGTTGGAGGCAAAGAATACC
CAAAAGATGACGGGCCTGGGAGTCTTCGCGGCCCTGCTTGTCGGTGCACT
GTACTTCGTGGCGGGCTACGTCTCCTCTCTTCCTCCAATTTACATTCCTC
ATGGCAAGGGTATCGAAATAAATGTCACTCACGCCGTGATGGCTATTCAT
GTCATGTGCTGGATCGCCCAATTTGTTGGCCACTTTGTTTTCGAAGGCCG
GGCCCCGGCGTTGATGACCAACCTCTACCAGGCCTTCTTGATGGCCCCTA
TTTTCGTTCTCATGGAGATGGTGTTTCTCGCGGGCGGGAAGAAGAAGCTG
TATAAGTCCATCGCCGCAAAGGTCAAGGAGGAGCTCGCCGCCTTTGAAAT
TCAAAAGGCAATTTCAAGCGGTGCCGGTCGAGTCACGCGCTCCAAGAGCA
AAAGGGCGTAAATGACACCCAAAAAGGATGCAGGCGGTCTCCTCGACATT
GAGAAGCAGTTCACATTCTACGCTGCCTATCACGACAATGCACTCAACAA
ATGGATCCACATCTTCTGTATCTGGCCTTTGCTTTTTACCGCCCTCATCC
TCTTATGGAAGATCCCCGTCGGGCTCCTCCAGAACGCCATCCTCCCTCCT
GCCGTCGCCGCTAAGTTATCGGTGCATGGCGTGCAGTTGACGGTCAACTG
GGCCTTGGTGGGAGCCGTGATTTACATTCTGTTCTACTTGTCGTTGGAGG
CAAAGAATACCCAAAAGATGACGGGCCTGGGAGTCTTCGCGGCCCTGCTT
GTCGGTGCACTGTACTTCGTGGCGGGCTACGTCTCCTCTCTTCCTCCAAT
TTACATTCCTCATGGCAAGGGTATCGAAATAAATGTCACTCACGCCGTGA
TGGCTATTCATGTCATGTGCTGGATCGCCCAATTTGTTGGCCACTTTGTT
TTCGAAGGCCGGGCCCCGGCGTTGATGACCAACCTCTACCAGGCCTTCTT
GATGGCCCCTATTTTCGTTCTCATGGAGATGGTGTTTCTCGCGGGCGGGA
AGAAGAAGCTGTATAAGTCCATCGCCGCAAAGGTCAAGGAGGAGCTCGCC
GCCTTTGAAATTCAAAAGGCAATTTCAAGCGGTGCCGGTCGAGTCACGCG
CTCCAAGAGCAAAAGGGCGTAAATGACACCCAAAAAGGATGCAGGCGGTC
TCCTCGACATTGAGAAGCAGTTCACATTCTACGCTGCCTATCACGACAAT
GCACTCAACAAATGGATCCACATCTTCTGTATCTGGCCTTTGCTTTTTAC
CGCCCTCATCCTCTTATGGAAGATCCCCGTCGGGCTCCTCCAGAACGCCA
TCCTCCCTCCTGCCGTCGCCGCTAAGTTATCGGTGCATGGCGTGCAGTTG
ACGGTCAACTGGGCCTTGGTGGGAGCCGTGATTTACATTCTGTTCTACTT
GTCGTTGGAGGCAAAGAATACCCAAAAGATGACGGGCCTGGGAGTCTTCG
CGGCCCTGCTTGTCGGTGCACTGTACTTCGTGGCGGGCTACGTCTCCTCT
CTTCCTCCAATTTACATTCCTCATGGCAAGGGTATCGAAATAAATGTCAC
TCACGCCGTGATGGCTATTCATGTCATGTGCTGGATCGCCCAATTTGTTG
GCCACTTTGTTTTCGAAGGCCGGGCCCCGGCGTTGATGACCAACCTCTAC
CAGGCCTTCTTGATGGCCCCTATTTTCGTTCTCATGGAGATGGTGTTTCT
CGCGGGCGGGAAGAAGAAGCTGTATAAGTCCATCGCCGCAAAGGTCAAGG
AGGAGCTCGCCGCCTTTGAAATTCAAAAGGCAATTTCAAGCGGTGCCGGT
CGAGTCACGCGCTCCAAGAGCAAAAGGGCGTAAATGACACCCAAAAAGGA
TGCAGGCGGTCTCCTCGACATTGAGAAGCAGTTCACATTCTACGCTGCCT
ATCACGACAATGCACTCAACAAATGGATCCACATCTTCTGTATCTGGCCT
TTGCTTTTTACCGCCCTCATCCTCTTATGGAAGATCCCCGTCGGGCTCCT
CCAGAACGCCATCCTCCCTCCTGCCGTCGCCGCTAAGTTATCGGTGCATG
GCGTGCAGTTGACGGTCAACTGGGCCTTGGTGGGAGCCGTGATTTACATT
CTGTTCTACTTGTCGTTGGAGGCAAAGAATACCCAAAAGATGACGGGCCT
GGGAGTCTTCGCGGCCCTGCTTGTCGGTGCACTGTACTTCGTGGCGGGCT
ACGTCTCCTCTCTTCCTCCAATTTACATTCCTCATGGCAAGGGTATCGAA
ATAAATGTCACTCACGCCGTGATGGCTATTCATGTCATGTGCTGGATCGC
CCAATTTGTTGGCCACTTTGTTTTCGAAGGCCGGGCCCCGGCGTTGATGA
CCAACCTCTACCAGGCCTTCTTGATGGCCCCTATTTTCGTTCTCATGGAG
ATGGTGTTTCTCGCGGGCGGGAAGAAGAAGCTGTATAAGTCCATCGCCGC
AAAGGTCAAGGAGGAGCTCGCCGCCTTTGAAATTCAAAAGGCAATTTCAA
GCGGTGCCGGTCGAGTCACGCGCTCCAAGAGCAAAAGGGCGTAAATGACA
CCCAAAAAGGATGCAGGCGGTCTCCTCGACATTGAGAAGCAGTTCACATT
CTACGCTGCCTATCACGACAATGCACTCAACAAATGGATCCACATCTTCT
GTATCTGGCCTTTGCTTTTTACCGCCCTCATCCTCTTATGGAAGATCCCC
GTCGGGCTCCTCCAGAACGCCATCCTCCCTCCTGCCGTCGCCGCTAAGTT
ATCGGTGCATGGCGTGCAGTTGACGGTCAACTGGGCCTTGGTGGGAGCCG
TGATTTACATTCTGTTCTACTTGTCGTTGGAGGCAAAGAATACCCAAAAG
ATGACGGGCCTGGGAGTCTTCGCGGCCCTGCTTGTCGGTGCACTGTACTT
CGTGGCGGGCTACGTCTCCTCTCTTCCTCCAATTTACATTCCTCATGGCA
AGGGTATCGAAATAAATGTCACTCACGCCGTGATGGCTATTCATGTCATG
TGCTGGATCGCCCAATTTGTTGGCCACTTTGTTTTCGAAGGCCGGGCCCC
GGCGTTGATGACCAACCTCTACCAGGCCTTCTTGATGGCCCCTATTTTCG
TTCTCATGGAGATGGTGTTTCTCGCGGGCGGGAAGAAGAAGCTGTATAAG
TCCATCGCCGCAAAGGTCAAGGAGGAGCTCGCCGCCTTTGAAATTCAAAA
GGCAATTTCAAGCGGTGCCGGTCGAGTCACGCGCTCCAAGAGCAAAAGGG
CGTAAATGACACCCAAAAAGGATGCAGGCGGTCTCCTCGACATTGAGAAG
CAGTTCACATTCTACGCTGCCTATCACGACAATGCACTCAACAAATGGAT
CCACATCTTCTGTATCTGGCCTTTGCTTTTTACCGCCCTCATCCTCTTAT
GGAAGATCCCCGTCGGGCTCCTCCAGAACGCCATCCTCCCTCCTGCCGTC
GCCGCTAAGTTATCGGTGCATGGCGTGCAGTTGACGGTCAACTGGGCCTT
GGTGGGAGCCGTGATTTACATTCTGTTCTACTTGTCGTTGGAGGCAAAGA
ATACCCAAAAGATGACGGGCCTGGGAGTCTTCGCGGCCCTGCTTGTCGGT
GCACTGTACTTCGTGGCGGGCTACGTCTCCTCTCTTCCTCCAATTTACAT
TCCTCATGGCAAGGGTATCGAAATAAATGTCACTCACGCCGTGATGGCTA
TTCATGTCATGTGCTGGATCGCCCAATTTGTTGGCCACTTTGTTTTCGAA
GGCCGGGCCCCGGCGTTGATGACCAACCTCTACCAGGCCTTCTTGATGGC
CCCTATTTTCGTTCTCATGGAGATGGTGTTTCTCGCGGGCGGGAAGAAGA
AGCTGTATAAGTCCATCGCCGCAAAGGTCAAGGAGGAGCTCGCCGCCTTT
GAAATTCAAAAGGCAATTTCAAGCGGTGCCGGTCGAGTCACGCGCTCCAA
GAGCAAAAGGGCGTAA

Synonyms

Publications