Properties
| Property Name | Value |
|---|
| TranscriptId | 340239 |
| Track | FilteredModels2 |
| ProteinId | 340153 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:1221530..1223863 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2800 ID=mRNA_2800|Name=jgi.p|Nanoce1779_2|340153|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp
CCCCTGCCCTCCTCTCTTTGCTGGCCCAAGCGGAGGCCCAATTGGCGTCA
CACCTACCATCACATGCGCAAGAGAAGCTGAAAGAGGTGGATGCGTGGGG
TTTGGAGGCACTGGGCCTTCCCCATGCCGGCACGACAGCTGTTTGCCTCC
TCCTCCTCCTCCTCCTCCTCCTCTCCTTACTCCTCCTCGGCAGTAGCGGT
GGAGCCGCGTCACAGCAACGGGCGGGGCGACAAAAGAGTAGAGGTCCCTC
CCTGCGCACCAGGCAAACCCACGCACATCGTTTTGGTCGGTCCGTGCGGC
GCGGGAAAGACATCACTTTACCACCAGCTTCTGTTCGGAGCAGTGCCCGA
GACGGTGACATCGATGGAGGAAAGCGAGGGCGTGGACAAAGAGAGGGGCT
TTACGTTGGTTGACTTTCCAGGGCACGAGCGCCTCCGAGATGAGTGGTTC
AAGCGGTACCTGTACACAGGAAAGGTAGCAGGGGTGGTGTTCGTGGTGGA
TGCTGCGGACTTCAGCGCCGCGGCTGTACGAGGAGCGGCAGAGTTTCTTT
ACAACCTCCTCACCCATTCCGCGATGGAGGGAGGGCCGCCCGTCTTGATT
GCCTGCCACAAGAGCGACTTGCCGAGTGCCAAGGGGCCTTCGAGGGTCCG
TACACTGCTGACACAAGAACTCGATCGACTGCGCAAAACGCGGGGCGGGG
TCATGGACGAGGGGGAGGGGGAGGAAGGGGAGGATCGACTGCCGCTAGGA
CGGACAGGACAGCCTCTCAATTTGGACATAGACGCGCCATCAGAGTTGTC
CTTCGCAGCGACCAGCGTGGTCCAGCAGCAGCAGCAGCAGCTGTTGGGTG
AGAATGAGGTTTTCGAAGAAGACCGAGGTGTAGGTCCCCTCATAAGCTTC
ATCGTGGATAAGGCCTTGGCGTGAGGAATGGTGATAGCGGGGGGAGCGGG
GAAGCAAAGGGAGGGGTGACGTGATCCTCAGCAAGAACAGAAAATTCAAA
GCACCCAGACTTGCGTGGTCAACTTGTTGAGATTAATTTGAACTTGCTTT
GATGTGACGAAGGACTTTAACCCCTAAAATAGCCTGTCTAAGGGTTTTGG
GAGCGTTGAACACACACCCTACTTAGAGGTTCCCCACCCATCCACACCCT
CCACCGCCGGATATATCGATGGTCACACACGCGCGGGTCGAAATCTGATG
AAAAGGTAAATACTTGAGTACTTTGGTGCATTCAAGGCGTAAC back to topprotein sequence of jgi.p|Nanoce1779_2|340153 >mRNA_2800-protein ID=mRNA_2800-protein|Name=jgi.p|Nanoce1779_2|340153|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MRGVWRHWAFPMPARQLFASSSSSSSSSPYSSSAVAVEPRHSNGRGDKRV
EVPPCAPGKPTHIVLVGPCGAGKTSLYHQLLFGAVPETVTSMEESEGVDK
ERGFTLVDFPGHERLRDEWFKRYLYTGKVAGVVFVVDAADFSAAAVRGAA
EFLYNLLTHSAMEGGPPVLIACHKSDLPSAKGPSRVRTLLTQELDRLRKT
RGGVMDEGEGEEGEDRLPLGRTGQPLNLDIDAPSELSFAATSVVQQQQQQ
LLGENEVFEEDRGVGPLISFIVDKALA* back to topmRNA from alignment at scaffold_5:1221530..1223863- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2800 ID=mRNA_2800|Name=jgi.p|Nanoce1779_2|340153|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp|location=Sequence derived from alignment at scaffold_5:1221530..1223863- (Nannochloropsis oceanica)
CCCCTGCCCTCCTCTCTTTGCTGGCCCAAGCGGAGGCCCAATTGGCGTCA
CACCTACCATCACATGCGCAAGAGAAGCTGAAAGAGGTGGATGCGTGGGG
TTTGGAGGCACTGGGTAAGAAGGGAGGAAGAAAGAATCTAGGGAGGGGGG
GAAAGGGAGGGAAGGGTGGAGGGAGGGATGGTGCTTGGAAAGGATGGAGC
AGCGAGAAGGCCTTTCTTCCCTTCCTTGCGTTGACAAAATCCTCTCAACT
CGTACACAGGCCTTCCCCATGCCGGCACGACAGCTGTTTGCCTCCTCCTC
CTCCTCCTCCTCCTCCTCTCCTTACTCCTCCTCGGCAGTAGCGGTGGAGC
CGCGTCACAGCAACGGGCGGGGCGACAAAAGAGTAGAGGTGAGCGTCGTA
CATAGTTTGGTCATCTAAACAGTGGAATTGGGATAACAGGACCGAATACA
CCTGCGCGTTTTCCCTCGCTGCCTCACTTTTGCCCCCTCCCCCCCGCAAA
TATCCCATATATATGTATATATTCGTCTCTCTCCCACCCTCCCTCCCACA
CCCTCCCTCCTTCACATACCCGCCCTCCTTCCCTCCGTCCCTCGGTCCCT
CCCTGCGCACCAGGCAAACCCACGCACATCGTTTTGGTCGGTCCGTGCGG
CGCGGGAAAGACATCACTTTACCACCAGCTTCTGTTCGGAGCAGTGCCCG
AGACGGTGACATCGATGGAGGAAAGCGAGGGCGTGGACAAAGAGAGGGGC
TTTACGTTGGTAGGAAAGGAGGGAGAAAGGACGGGAGGCAAGGAGAAATG
GAGGGGTAGGCTGCATAATTAAATGTGTCTGCACTTCCTCGTCAATCACT
TAGCAGGTTCCCCTTTCTACTACTTCTTCCTCTCTTCATTGTCTTCTTCT
CCTCCTCCTCCTCTTCCTATTGCAATTACTACTTCCCTCCACCTCCTCAT
CCTCTTCCTCCTCTTCTTCTTCTCCCTCTTCTTCTTTTTCTTCTTCTTCT
TCTTTTTCCTCTCGGTAGGTTGACTTTCCAGGGCACGAGCGCCTCCGAGA
TGAGTGGTTCAAGCGGTACCTGTACACAGGAAAGGTACGACTCCTCCCTC
CTTCCCTCCCTCCCTCCCCTTCCTACCTCACCTCCTCTATCTTCCTCTCA
TTAATGGTCTCATGGTCCCTCCCCTCCTTCCCTCCCTCCCTCCCTTCTTC
AACCCTTCCCCCTCGCAGGTAGCAGGGGTGGTGTTCGTGGTGGATGCTGC
GGACTTCAGCGCCGCGGCTGTACGAGGAGCGGCAGAGTACGTAGGAAAGG
AGGAAGAGAGGGGAGGGAGGGAGGGAGGCAGAGTGAAAGTTGTGCTAAAT
GGAGTGTGAATCTACTGAAACCGAGGTCTTGACGATTAACCAGCCATTCT
CATTCACCCATCCCTCCTCCCCCCCTGCCTCCCTCCCTCCCTTCCTCCCT
CCCTCACGTCCTTCCTCAGGTTTCTTTACAACCTCCTCACCCATTCCGCG
ATGGAGGGAGGGCCGCCCGTCTTGATTGCCTGCCACAAGAGCGACTTGCC
GAGTGCCAAGGGGCCTTCGAGGGTCCGTACACTGCTGACACAAGAACTGT
ACGTCGCCCTTCATCCCTGTCTCCCGCTCGCCTGCCCTCCCTCCCTCCCT
CCCCCCTTTGTGTCGGAATCAACCGCTGCTGGAGTCTAATTTATCCCCTT
CCTCCCTCCTTCCCCCCCTCCCTCACTCCGTCCCTCAAATCCACCCTTCT
TCCACCACACAGCGATCGACTGCGCAAAACGCGGGGCGGGGTCATGGACG
AGGGGGAGGGGGAGGAAGGGGAGGATCGACTGCCGCTAGGACGGACAGGA
CAGCCTCTCAATTTGGACATAGACGCGCCATCAGAGTTGTCCTTCGCAGC
GACCAGCGTGGTCCAGCAGCAGCAGCAGCAGCTGTTGGGTGAGAATGAGG
TTTTCGAAGAAGACCGAGGTGTAGGTCCCCTCATAAGCTTCATCGTGGAT
AAGGCCTTGGCGTGAGGAATGGTGATAGCGGGGGGAGCGGGGAAGCAAAG
GGAGGGGTGACGTGATCCTCAGCAAGAACAGAAAATTCAAAGCACCCAGA
CTTGCGTGGTCAACTTGTTGAGATTAATTTGAACTTGCTTTGATGTGACG
AAGGACTTTAACCCCTAAAATAGCCTGTCTAAGGGTTTTGGGAGCGTTGA
ACACACACCCTACTTAGAGGTTCCCCACCCATCCACACCCTCCACCGCCG
GATATATCGATGGTCACACACGCGCGGGTCGAAATCTGATGAAAAGGTAA
ATACTTGAGTACTTTGGTGCATTCAAGGCGTAAC back to topCoding sequence (CDS) from alignment at scaffold_5:1221530..1223863- >mRNA_2800 ID=mRNA_2800|Name=jgi.p|Nanoce1779_2|340153|organism=Nannochloropsis oceanica|type=CDS|length=5838bp|location=Sequence derived from alignment at scaffold_5:1221530..1223863- (Nannochloropsis oceanica)
CGATCGACTGCGCAAAACGCGGGGCGGGGTCATGGACGAGGGGGAGGGGG
AGGAAGGGGAGGATCGACTGCCGCTAGGACGGACAGGACAGCCTCTCAAT
TTGGACATAGACGCGCCATCAGAGTTGTCCTTCGCAGCGACCAGCGTGGT
CCAGCAGCAGCAGCAGCAGCTGTTGGGTGAGAATGAGGTTTTCGAAGAAG
ACCGAGGTGTAGGTCCCCTCATAAGCTTCATCGTGGATAAGGCCTTGGCG
TGAGTTTCTTTACAACCTCCTCACCCATTCCGCGATGGAGGGAGGGCCGC
CCGTCTTGATTGCCTGCCACAAGAGCGACTTGCCGAGTGCCAAGGGGCCT
TCGAGGGTCCGTACACTGCTGACACAAGAACTGTAGCAGGGGTGGTGTTC
GTGGTGGATGCTGCGGACTTCAGCGCCGCGGCTGTACGAGGAGCGGCAGA
GTTGACTTTCCAGGGCACGAGCGCCTCCGAGATGAGTGGTTCAAGCGGTA
CCTGTACACAGGAAAGGTCCCTCCCTGCGCACCAGGCAAACCCACGCACA
TCGTTTTGGTCGGTCCGTGCGGCGCGGGAAAGACATCACTTTACCACCAG
CTTCTGTTCGGAGCAGTGCCCGAGACGGTGACATCGATGGAGGAAAGCGA
GGGCGTGGACAAAGAGAGGGGCTTTACGTTGGCCTTCCCCATGCCGGCAC
GACAGCTGTTTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTACTCC
TCCTCGGCAGTAGCGGTGGAGCCGCGTCACAGCAACGGGCGGGGCGACAA
AAGAGTAGAGATGCGTGGGGTTTGGAGGCACTGGCGATCGACTGCGCAAA
ACGCGGGGCGGGGTCATGGACGAGGGGGAGGGGGAGGAAGGGGAGGATCG
ACTGCCGCTAGGACGGACAGGACAGCCTCTCAATTTGGACATAGACGCGC
CATCAGAGTTGTCCTTCGCAGCGACCAGCGTGGTCCAGCAGCAGCAGCAG
CAGCTGTTGGGTGAGAATGAGGTTTTCGAAGAAGACCGAGGTGTAGGTCC
CCTCATAAGCTTCATCGTGGATAAGGCCTTGGCGTGAGTTTCTTTACAAC
CTCCTCACCCATTCCGCGATGGAGGGAGGGCCGCCCGTCTTGATTGCCTG
CCACAAGAGCGACTTGCCGAGTGCCAAGGGGCCTTCGAGGGTCCGTACAC
TGCTGACACAAGAACTGTAGCAGGGGTGGTGTTCGTGGTGGATGCTGCGG
ACTTCAGCGCCGCGGCTGTACGAGGAGCGGCAGAGTTGACTTTCCAGGGC
ACGAGCGCCTCCGAGATGAGTGGTTCAAGCGGTACCTGTACACAGGAAAG
GTCCCTCCCTGCGCACCAGGCAAACCCACGCACATCGTTTTGGTCGGTCC
GTGCGGCGCGGGAAAGACATCACTTTACCACCAGCTTCTGTTCGGAGCAG
TGCCCGAGACGGTGACATCGATGGAGGAAAGCGAGGGCGTGGACAAAGAG
AGGGGCTTTACGTTGGCCTTCCCCATGCCGGCACGACAGCTGTTTGCCTC
CTCCTCCTCCTCCTCCTCCTCCTCTCCTTACTCCTCCTCGGCAGTAGCGG
TGGAGCCGCGTCACAGCAACGGGCGGGGCGACAAAAGAGTAGAGATGCGT
GGGGTTTGGAGGCACTGGCGATCGACTGCGCAAAACGCGGGGCGGGGTCA
TGGACGAGGGGGAGGGGGAGGAAGGGGAGGATCGACTGCCGCTAGGACGG
ACAGGACAGCCTCTCAATTTGGACATAGACGCGCCATCAGAGTTGTCCTT
CGCAGCGACCAGCGTGGTCCAGCAGCAGCAGCAGCAGCTGTTGGGTGAGA
ATGAGGTTTTCGAAGAAGACCGAGGTGTAGGTCCCCTCATAAGCTTCATC
GTGGATAAGGCCTTGGCGTGAGTTTCTTTACAACCTCCTCACCCATTCCG
CGATGGAGGGAGGGCCGCCCGTCTTGATTGCCTGCCACAAGAGCGACTTG
CCGAGTGCCAAGGGGCCTTCGAGGGTCCGTACACTGCTGACACAAGAACT
GTAGCAGGGGTGGTGTTCGTGGTGGATGCTGCGGACTTCAGCGCCGCGGC
TGTACGAGGAGCGGCAGAGTTGACTTTCCAGGGCACGAGCGCCTCCGAGA
TGAGTGGTTCAAGCGGTACCTGTACACAGGAAAGGTCCCTCCCTGCGCAC
CAGGCAAACCCACGCACATCGTTTTGGTCGGTCCGTGCGGCGCGGGAAAG
ACATCACTTTACCACCAGCTTCTGTTCGGAGCAGTGCCCGAGACGGTGAC
ATCGATGGAGGAAAGCGAGGGCGTGGACAAAGAGAGGGGCTTTACGTTGG
CCTTCCCCATGCCGGCACGACAGCTGTTTGCCTCCTCCTCCTCCTCCTCC
TCCTCCTCTCCTTACTCCTCCTCGGCAGTAGCGGTGGAGCCGCGTCACAG
CAACGGGCGGGGCGACAAAAGAGTAGAGATGCGTGGGGTTTGGAGGCACT
GGCGATCGACTGCGCAAAACGCGGGGCGGGGTCATGGACGAGGGGGAGGG
GGAGGAAGGGGAGGATCGACTGCCGCTAGGACGGACAGGACAGCCTCTCA
ATTTGGACATAGACGCGCCATCAGAGTTGTCCTTCGCAGCGACCAGCGTG
GTCCAGCAGCAGCAGCAGCAGCTGTTGGGTGAGAATGAGGTTTTCGAAGA
AGACCGAGGTGTAGGTCCCCTCATAAGCTTCATCGTGGATAAGGCCTTGG
CGTGAGTTTCTTTACAACCTCCTCACCCATTCCGCGATGGAGGGAGGGCC
GCCCGTCTTGATTGCCTGCCACAAGAGCGACTTGCCGAGTGCCAAGGGGC
CTTCGAGGGTCCGTACACTGCTGACACAAGAACTGTAGCAGGGGTGGTGT
TCGTGGTGGATGCTGCGGACTTCAGCGCCGCGGCTGTACGAGGAGCGGCA
GAGTTGACTTTCCAGGGCACGAGCGCCTCCGAGATGAGTGGTTCAAGCGG
TACCTGTACACAGGAAAGGTCCCTCCCTGCGCACCAGGCAAACCCACGCA
CATCGTTTTGGTCGGTCCGTGCGGCGCGGGAAAGACATCACTTTACCACC
AGCTTCTGTTCGGAGCAGTGCCCGAGACGGTGACATCGATGGAGGAAAGC
GAGGGCGTGGACAAAGAGAGGGGCTTTACGTTGGCCTTCCCCATGCCGGC
ACGACAGCTGTTTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTACT
CCTCCTCGGCAGTAGCGGTGGAGCCGCGTCACAGCAACGGGCGGGGCGAC
AAAAGAGTAGAGATGCGTGGGGTTTGGAGGCACTGGCGATCGACTGCGCA
AAACGCGGGGCGGGGTCATGGACGAGGGGGAGGGGGAGGAAGGGGAGGAT
CGACTGCCGCTAGGACGGACAGGACAGCCTCTCAATTTGGACATAGACGC
GCCATCAGAGTTGTCCTTCGCAGCGACCAGCGTGGTCCAGCAGCAGCAGC
AGCAGCTGTTGGGTGAGAATGAGGTTTTCGAAGAAGACCGAGGTGTAGGT
CCCCTCATAAGCTTCATCGTGGATAAGGCCTTGGCGTGAGTTTCTTTACA
ACCTCCTCACCCATTCCGCGATGGAGGGAGGGCCGCCCGTCTTGATTGCC
TGCCACAAGAGCGACTTGCCGAGTGCCAAGGGGCCTTCGAGGGTCCGTAC
ACTGCTGACACAAGAACTGTAGCAGGGGTGGTGTTCGTGGTGGATGCTGC
GGACTTCAGCGCCGCGGCTGTACGAGGAGCGGCAGAGTTGACTTTCCAGG
GCACGAGCGCCTCCGAGATGAGTGGTTCAAGCGGTACCTGTACACAGGAA
AGGTCCCTCCCTGCGCACCAGGCAAACCCACGCACATCGTTTTGGTCGGT
CCGTGCGGCGCGGGAAAGACATCACTTTACCACCAGCTTCTGTTCGGAGC
AGTGCCCGAGACGGTGACATCGATGGAGGAAAGCGAGGGCGTGGACAAAG
AGAGGGGCTTTACGTTGGCCTTCCCCATGCCGGCACGACAGCTGTTTGCC
TCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTACTCCTCCTCGGCAGTAGC
GGTGGAGCCGCGTCACAGCAACGGGCGGGGCGACAAAAGAGTAGAGATGC
GTGGGGTTTGGAGGCACTGGCGATCGACTGCGCAAAACGCGGGGCGGGGT
CATGGACGAGGGGGAGGGGGAGGAAGGGGAGGATCGACTGCCGCTAGGAC
GGACAGGACAGCCTCTCAATTTGGACATAGACGCGCCATCAGAGTTGTCC
TTCGCAGCGACCAGCGTGGTCCAGCAGCAGCAGCAGCAGCTGTTGGGTGA
GAATGAGGTTTTCGAAGAAGACCGAGGTGTAGGTCCCCTCATAAGCTTCA
TCGTGGATAAGGCCTTGGCGTGAGTTTCTTTACAACCTCCTCACCCATTC
CGCGATGGAGGGAGGGCCGCCCGTCTTGATTGCCTGCCACAAGAGCGACT
TGCCGAGTGCCAAGGGGCCTTCGAGGGTCCGTACACTGCTGACACAAGAA
CTGTAGCAGGGGTGGTGTTCGTGGTGGATGCTGCGGACTTCAGCGCCGCG
GCTGTACGAGGAGCGGCAGAGTTGACTTTCCAGGGCACGAGCGCCTCCGA
GATGAGTGGTTCAAGCGGTACCTGTACACAGGAAAGGTCCCTCCCTGCGC
ACCAGGCAAACCCACGCACATCGTTTTGGTCGGTCCGTGCGGCGCGGGAA
AGACATCACTTTACCACCAGCTTCTGTTCGGAGCAGTGCCCGAGACGGTG
ACATCGATGGAGGAAAGCGAGGGCGTGGACAAAGAGAGGGGCTTTACGTT
GGCCTTCCCCATGCCGGCACGACAGCTGTTTGCCTCCTCCTCCTCCTCCT
CCTCCTCCTCTCCTTACTCCTCCTCGGCAGTAGCGGTGGAGCCGCGTCAC
AGCAACGGGCGGGGCGACAAAAGAGTAGAGATGCGTGGGGTTTGGAGGCA
CTGGCGATCGACTGCGCAAAACGCGGGGCGGGGTCATGGACGAGGGGGAG
GGGGAGGAAGGGGAGGATCGACTGCCGCTAGGACGGACAGGACAGCCTCT
CAATTTGGACATAGACGCGCCATCAGAGTTGTCCTTCGCAGCGACCAGCG
TGGTCCAGCAGCAGCAGCAGCAGCTGTTGGGTGAGAATGAGGTTTTCGAA
GAAGACCGAGGTGTAGGTCCCCTCATAAGCTTCATCGTGGATAAGGCCTT
GGCGTGAGTTTCTTTACAACCTCCTCACCCATTCCGCGATGGAGGGAGGG
CCGCCCGTCTTGATTGCCTGCCACAAGAGCGACTTGCCGAGTGCCAAGGG
GCCTTCGAGGGTCCGTACACTGCTGACACAAGAACTGTAGCAGGGGTGGT
GTTCGTGGTGGATGCTGCGGACTTCAGCGCCGCGGCTGTACGAGGAGCGG
CAGAGTTGACTTTCCAGGGCACGAGCGCCTCCGAGATGAGTGGTTCAAGC
GGTACCTGTACACAGGAAAGGTCCCTCCCTGCGCACCAGGCAAACCCACG
CACATCGTTTTGGTCGGTCCGTGCGGCGCGGGAAAGACATCACTTTACCA
CCAGCTTCTGTTCGGAGCAGTGCCCGAGACGGTGACATCGATGGAGGAAA
GCGAGGGCGTGGACAAAGAGAGGGGCTTTACGTTGGCCTTCCCCATGCCG
GCACGACAGCTGTTTGCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTA
CTCCTCCTCGGCAGTAGCGGTGGAGCCGCGTCACAGCAACGGGCGGGGCG
ACAAAAGAGTAGAGATGCGTGGGGTTTGGAGGCACTGG back to top
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