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Properties
| Property Name | Value |
|---|
| TranscriptId | 661758 |
| Track | FilteredModels2 |
| ProteinId | 661672 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:390489..392424 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2455 ID=mRNA_2455|Name=jgi.p|Nanoce1779_2|661672|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp
CTCGTCAAAACAGCCTCCAGTGGCGGGTTTGATGTCAAAGGCTAGCCAAG
CGACTCAACATATATGGTAGTACACAGACCCTCTATTTCTAGCTGGAAGC
TGTCACTTTTAAGGGGGCTTGTCGTATTCTCGCCTCTGCGTTCCATCGGG
TCTTTCTCATCGCGAGCTGTCGGACCAGCCGCGGTATTGTACGACCCCAT
CTTCTTCTGTCTGAAATGACAAAGTGACCTTTTGTCCATAGCCGCCCGAA
ACATAACGATTCACTTTTGCTCATCACCATACCAAAACCTCCATAGGCCC
TCCGAAGGTGGTGCTTTGATTTTGCCTGAGGACAAGGAGCGAGGCGCACG
CCCGCGCAGATCATCACCTTTCCATCACAGGCCCCAATCTACACCATGAA
GCTCTACTTCCACTACGAGGAGACCGACGACGCGGGTGATGTCGAGGAAG
CAAAAGCCTTAACTCTTAAACTCACACTACCAAAAAGCTGGGTGGGACAG
CCGCTGCTCCAAGTGCTGGAGCTCTTTCTTGAGAACTATAACAACAAGAA
GGCCAGGCTCGAACCTTTGGACATATCCGGAGTGCATCTGGAAAAGGCAG
ACGGTATGAAAATCCACACCACTGATATCGTGAAGGATATTCTGAGTGAT
CGCGATGACGTGTACGTCAAACATGGGGCGGAACAACCAGCCAAGGCAAA
GCGTACCCCGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCTTCTTCTATCCCTGGAGCCACCACAGAAGGTAGC
ACCGGCCTGCTGCGCTGCAAGAACTACGGATGCAACCAGTCTTTTGCCCA
AGAGACCAACACGGAGTCAGCCTGCCGCTTCCATAGGGCCCCCCCCGTGT
TTCACGACACGAAGAAAGGTTGGGCTTGTTGCACGAAGCGGGTTTATGAC
TGGGACGAGTTCCATACGATCGAGGGCTGTGCCACCGGCCGACACAGCAC
CTTGGATCCCAAGGAGGTGTTTGCCCCATCGCCTACTCTCGCAGCCGCTA
ATCAAGCTGGAGCTAATGGAGGAAGTGATGCCCCCGGCGCTTCTTCTACG
GCCCTCAAGTCCATCGAGGACTACAACCAAGCGAACCCCGATGCTGCCAC
TGCTGCCAAAAGCGCGGCGTCGTCAGTGACCAAGCCTCAGGCCAGGTGCA
CCGTCAAGGCGGACGGGTCGGCCACGTGTCTGAATAAGGGATGTCAAAAG
GAGTTTCAAGTCAAGGAGAACCACCCAACGGCTTGCTGCTACCACGCGTC
CGGACCCGTCTTTCACGACGCGGGCAAGTTCTGGTCCTGTTGTCCCGGGG
TGATCAAGTACGACTTTGAGGAATTTTTGAAAATTCCCGGATGTATGGTT
AGTAGCCACCTTGATGGGAGCGAGGAGAGTTCGCGGTTTTTCGAGTCGCA
TGCGAGAAAAAGGGAAGATCGGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|661672 >mRNA_2455-protein ID=mRNA_2455-protein|Name=jgi.p|Nanoce1779_2|661672|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MKLYFHYEETDDAGDVEEAKALTLKLTLPKSWVGQPLLQVLELFLENYNN
KKARLEPLDISGVHLEKADGMKIHTTDIVKDILSDRDDVYVKHGAEQPAK
AKRTPPSSSSSSSSSSSSSSSSSSSSIPGATTEGSTGLLRCKNYGCNQSF
AQETNTESACRFHRAPPVFHDTKKGWACCTKRVYDWDEFHTIEGCATGRH
STLDPKEVFAPSPTLAAANQAGANGGSDAPGASSTALKSIEDYNQANPDA
ATAAKSAASSVTKPQARCTVKADGSATCLNKGCQKEFQVKENHPTACCYH
ASGPVFHDAGKFWSCCPGVIKYDFEEFLKIPGCMVSSHLDGSEESSRFFE
SHARKREDR* back to topmRNA from alignment at scaffold_5:390489..392424- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2455 ID=mRNA_2455|Name=jgi.p|Nanoce1779_2|661672|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp|location=Sequence derived from alignment at scaffold_5:390489..392424- (Nannochloropsis oceanica)
CTCGTCAAAACAGCCTCCAGTGGCGGGTTTGATGTCAAAGGCTAGCCAAG
CGACTCAACATATATGGTAGTACACAGACCCTCTATTTCTAGCTGGAAGC
TGTCACTTTTAAGGGGGCTTGTCGTATTCTCGCCTCTGCGTTCCATCGGG
TCTTTCTCATCGCGAGCTGTCGGACCAGCCGCGGTATTGTACGACCCCAT
CTTCTTCTGTCTGAAATGACAAAGTGACCTTTTGTCCATAGCCGCCCGAA
ACATAACGATTCACTTTTGCTCATCACCATACCAAAACCTCCATAGGCCC
TCCGAAGGTGGTGCTTTGATTTTGCCTGAGGACAAGGAGCGAGGCGCACG
CCCGCGCAGATCATCACCTTTCCATCACAGGCCCCAATCTACACCATGAA
GCTCTACTTCCACTACGAGGAGACCGACGACGCGGGTGATGTCGAGGAAG
CAAAAGCCTTAACTCTTAAACTCACACTACCAAAAAGCTGGGTGGGACAG
CCGCTGCTCCAAGTGCTGGAGCTCTTTCTTGAGAACTATAACAACAAGAA
GGCCAGGCTCGAACCTTTGGACATATCCGGAGTGCATCTGGAAAAGGCAG
AGTAAGCTCAAAAATCTTCCTTCTATCTATGTGTCGCATGCTCGCATGCA
CTCTGTCATGCTTCAAGGCTCGGGCTAAATGTCACAATGCCCTCGCACGT
GCCGCCAAGGCATTTCACGCTCACACTTTATTCTTCCTTATAATCCTCTT
CCTCCTCGTCCAGCGGTATGAAAATCCACACCACTGATATCGTGAAGGAT
ATTCTGAGTGATCGCGATGACGTGTACGTCAAACATGGGGCGGAACAACC
AGCCAAGGCAAAGCGTACCCCGCCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTATCCCTGGAGCCACC
ACAGAAGGTAGCACCGGCCTGCTGCGCTGCAAGAACTACGGATGCAACCA
GTCTTTTGCCCAAGAGACCAACACGGAGTCAGCCTGCCGCTTCCATAGGG
CCCCCCCCGTGTTTCACGACACGAAGAAAGGTTGGGCTTGTTGCACGAAG
CGGGTTTATGACTGGGACGAGTTCCATACGGTACGTTTCGGCTGTCCTCT
GTTTGGATTGATCGATATGTGTCGCCCTTTGCTAATTTTCAGAGTGCAGC
AAGTGCATGGATCGCCTCTCTGACTGTCCTCTTCCTTTTCTCCTCCAAAA
AATGTCCCCCCTCAAGATCGAGGGCTGTGCCACCGGCCGACACAGCACCT
TGGATCCCAAGGAGGTGTTTGCCCCATCGCCTACTCTCGCAGCCGCTAAT
CAAGCTGGAGCTAATGGAGGAAGTGATGCCCCCGGCGCTTCTTCTACGGC
CCTCAAGTCCATCGAGGACTACAACCAAGCGAACCCCGATGCTGCCACTG
CTGCCAAAAGCGCGGCGTCGTCAGTGACCAAGCCTCAGGCCAGGTGCACC
GTCAAGGCGGACGGGTCGGCCACGTGTCTGAATAAGGGATGTCAAAAGGA
GTTTCAAGTCAAGGAGAACCACCCAACGGCTTGCTGGTACGTGGAGAGTC
AAAGTCGTATTTTTATATATCATGCCGTCCCTTCCTCCCTTCCTCGCGCA
CAGCGCATCCGCACCGCATCACCCTCTCTCTCGCTCTCTCTTGGCTGACG
TTTTGCCTTCTCTTTCCCTGCGTCTTCTTCCCACCCTAACCCTATAAAGC
TACCACGCGTCCGGACCCGTCTTTCACGACGCGGGCAAGTTCTGGTCCTG
TTGTCCCGGGGTGATCAAGTACGACTTTGAGGAATTTTTGAAAATTCCCG
GATGTATGGTTAGTAGCCACCTTGATGGGAGCGAGGAGAGTTCGCGGTTT
TTCGAGTCGCATGCGAGAAAAAGGGAAGATCGGTGA back to topCoding sequence (CDS) from alignment at scaffold_5:390489..392424- >mRNA_2455 ID=mRNA_2455|Name=jgi.p|Nanoce1779_2|661672|organism=Nannochloropsis oceanica|type=CDS|length=4320bp|location=Sequence derived from alignment at scaffold_5:390489..392424- (Nannochloropsis oceanica)
CTACCACGCGTCCGGACCCGTCTTTCACGACGCGGGCAAGTTCTGGTCCT
GTTGTCCCGGGGTGATCAAGTACGACTTTGAGGAATTTTTGAAAATTCCC
GGATGTATGGTTAGTAGCCACCTTGATGGGAGCGAGGAGAGTTCGCGGTT
TTTCGAGTCGCATGCGAGAAAAAGGGAAGATCGGTGAATCGAGGGCTGTG
CCACCGGCCGACACAGCACCTTGGATCCCAAGGAGGTGTTTGCCCCATCG
CCTACTCTCGCAGCCGCTAATCAAGCTGGAGCTAATGGAGGAAGTGATGC
CCCCGGCGCTTCTTCTACGGCCCTCAAGTCCATCGAGGACTACAACCAAG
CGAACCCCGATGCTGCCACTGCTGCCAAAAGCGCGGCGTCGTCAGTGACC
AAGCCTCAGGCCAGGTGCACCGTCAAGGCGGACGGGTCGGCCACGTGTCT
GAATAAGGGATGTCAAAAGGAGTTTCAAGTCAAGGAGAACCACCCAACGG
CTTGCTGCGGTATGAAAATCCACACCACTGATATCGTGAAGGATATTCTG
AGTGATCGCGATGACGTGTACGTCAAACATGGGGCGGAACAACCAGCCAA
GGCAAAGCGTACCCCGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCTTCTTCTATCCCTGGAGCCACCACAGAA
GGTAGCACCGGCCTGCTGCGCTGCAAGAACTACGGATGCAACCAGTCTTT
TGCCCAAGAGACCAACACGGAGTCAGCCTGCCGCTTCCATAGGGCCCCCC
CCGTGTTTCACGACACGAAGAAAGGTTGGGCTTGTTGCACGAAGCGGGTT
TATGACTGGGACGAGTTCCATACGATGAAGCTCTACTTCCACTACGAGGA
GACCGACGACGCGGGTGATGTCGAGGAAGCAAAAGCCTTAACTCTTAAAC
TCACACTACCAAAAAGCTGGGTGGGACAGCCGCTGCTCCAAGTGCTGGAG
CTCTTTCTTGAGAACTATAACAACAAGAAGGCCAGGCTCGAACCTTTGGA
CATATCCGGAGTGCATCTGGAAAAGGCAGACTACCACGCGTCCGGACCCG
TCTTTCACGACGCGGGCAAGTTCTGGTCCTGTTGTCCCGGGGTGATCAAG
TACGACTTTGAGGAATTTTTGAAAATTCCCGGATGTATGGTTAGTAGCCA
CCTTGATGGGAGCGAGGAGAGTTCGCGGTTTTTCGAGTCGCATGCGAGAA
AAAGGGAAGATCGGTGAATCGAGGGCTGTGCCACCGGCCGACACAGCACC
TTGGATCCCAAGGAGGTGTTTGCCCCATCGCCTACTCTCGCAGCCGCTAA
TCAAGCTGGAGCTAATGGAGGAAGTGATGCCCCCGGCGCTTCTTCTACGG
CCCTCAAGTCCATCGAGGACTACAACCAAGCGAACCCCGATGCTGCCACT
GCTGCCAAAAGCGCGGCGTCGTCAGTGACCAAGCCTCAGGCCAGGTGCAC
CGTCAAGGCGGACGGGTCGGCCACGTGTCTGAATAAGGGATGTCAAAAGG
AGTTTCAAGTCAAGGAGAACCACCCAACGGCTTGCTGCGGTATGAAAATC
CACACCACTGATATCGTGAAGGATATTCTGAGTGATCGCGATGACGTGTA
CGTCAAACATGGGGCGGAACAACCAGCCAAGGCAAAGCGTACCCCGCCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCTTCTTCTATCCCTGGAGCCACCACAGAAGGTAGCACCGGCCTGCTGCG
CTGCAAGAACTACGGATGCAACCAGTCTTTTGCCCAAGAGACCAACACGG
AGTCAGCCTGCCGCTTCCATAGGGCCCCCCCCGTGTTTCACGACACGAAG
AAAGGTTGGGCTTGTTGCACGAAGCGGGTTTATGACTGGGACGAGTTCCA
TACGATGAAGCTCTACTTCCACTACGAGGAGACCGACGACGCGGGTGATG
TCGAGGAAGCAAAAGCCTTAACTCTTAAACTCACACTACCAAAAAGCTGG
GTGGGACAGCCGCTGCTCCAAGTGCTGGAGCTCTTTCTTGAGAACTATAA
CAACAAGAAGGCCAGGCTCGAACCTTTGGACATATCCGGAGTGCATCTGG
AAAAGGCAGACTACCACGCGTCCGGACCCGTCTTTCACGACGCGGGCAAG
TTCTGGTCCTGTTGTCCCGGGGTGATCAAGTACGACTTTGAGGAATTTTT
GAAAATTCCCGGATGTATGGTTAGTAGCCACCTTGATGGGAGCGAGGAGA
GTTCGCGGTTTTTCGAGTCGCATGCGAGAAAAAGGGAAGATCGGTGAATC
GAGGGCTGTGCCACCGGCCGACACAGCACCTTGGATCCCAAGGAGGTGTT
TGCCCCATCGCCTACTCTCGCAGCCGCTAATCAAGCTGGAGCTAATGGAG
GAAGTGATGCCCCCGGCGCTTCTTCTACGGCCCTCAAGTCCATCGAGGAC
TACAACCAAGCGAACCCCGATGCTGCCACTGCTGCCAAAAGCGCGGCGTC
GTCAGTGACCAAGCCTCAGGCCAGGTGCACCGTCAAGGCGGACGGGTCGG
CCACGTGTCTGAATAAGGGATGTCAAAAGGAGTTTCAAGTCAAGGAGAAC
CACCCAACGGCTTGCTGCGGTATGAAAATCCACACCACTGATATCGTGAA
GGATATTCTGAGTGATCGCGATGACGTGTACGTCAAACATGGGGCGGAAC
AACCAGCCAAGGCAAAGCGTACCCCGCCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTATCCCTGGAGC
CACCACAGAAGGTAGCACCGGCCTGCTGCGCTGCAAGAACTACGGATGCA
ACCAGTCTTTTGCCCAAGAGACCAACACGGAGTCAGCCTGCCGCTTCCAT
AGGGCCCCCCCCGTGTTTCACGACACGAAGAAAGGTTGGGCTTGTTGCAC
GAAGCGGGTTTATGACTGGGACGAGTTCCATACGATGAAGCTCTACTTCC
ACTACGAGGAGACCGACGACGCGGGTGATGTCGAGGAAGCAAAAGCCTTA
ACTCTTAAACTCACACTACCAAAAAGCTGGGTGGGACAGCCGCTGCTCCA
AGTGCTGGAGCTCTTTCTTGAGAACTATAACAACAAGAAGGCCAGGCTCG
AACCTTTGGACATATCCGGAGTGCATCTGGAAAAGGCAGACTACCACGCG
TCCGGACCCGTCTTTCACGACGCGGGCAAGTTCTGGTCCTGTTGTCCCGG
GGTGATCAAGTACGACTTTGAGGAATTTTTGAAAATTCCCGGATGTATGG
TTAGTAGCCACCTTGATGGGAGCGAGGAGAGTTCGCGGTTTTTCGAGTCG
CATGCGAGAAAAAGGGAAGATCGGTGAATCGAGGGCTGTGCCACCGGCCG
ACACAGCACCTTGGATCCCAAGGAGGTGTTTGCCCCATCGCCTACTCTCG
CAGCCGCTAATCAAGCTGGAGCTAATGGAGGAAGTGATGCCCCCGGCGCT
TCTTCTACGGCCCTCAAGTCCATCGAGGACTACAACCAAGCGAACCCCGA
TGCTGCCACTGCTGCCAAAAGCGCGGCGTCGTCAGTGACCAAGCCTCAGG
CCAGGTGCACCGTCAAGGCGGACGGGTCGGCCACGTGTCTGAATAAGGGA
TGTCAAAAGGAGTTTCAAGTCAAGGAGAACCACCCAACGGCTTGCTGCGG
TATGAAAATCCACACCACTGATATCGTGAAGGATATTCTGAGTGATCGCG
ATGACGTGTACGTCAAACATGGGGCGGAACAACCAGCCAAGGCAAAGCGT
ACCCCGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCTTCTTCTATCCCTGGAGCCACCACAGAAGGTAGCACCG
GCCTGCTGCGCTGCAAGAACTACGGATGCAACCAGTCTTTTGCCCAAGAG
ACCAACACGGAGTCAGCCTGCCGCTTCCATAGGGCCCCCCCCGTGTTTCA
CGACACGAAGAAAGGTTGGGCTTGTTGCACGAAGCGGGTTTATGACTGGG
ACGAGTTCCATACGATGAAGCTCTACTTCCACTACGAGGAGACCGACGAC
GCGGGTGATGTCGAGGAAGCAAAAGCCTTAACTCTTAAACTCACACTACC
AAAAAGCTGGGTGGGACAGCCGCTGCTCCAAGTGCTGGAGCTCTTTCTTG
AGAACTATAACAACAAGAAGGCCAGGCTCGAACCTTTGGACATATCCGGA
GTGCATCTGGAAAAGGCAGA back to top
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