jgi.p|Nanoce1779_2|344856, mRNA_10495 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|344856
Unique NamemRNA_10495
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length397
Alignment locationscaffold_52:83758..84154 -

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Properties
Property NameValue
TranscriptId344942
TrackFilteredModels2
ProteinId344856
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:83758..84154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|344856gene_10495Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|344856mRNA_10495-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10495CDS_10495Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10495 ID=mRNA_10495|Name=jgi.p|Nanoce1779_2|344856|organism=Nannochloropsis oceanica|type=mRNA|length=397bp
GATAGGTAGTTTCCTTCTATTTATACCTTGCTTTCCGACCAAATTTGGAC
GATGTTGAGGCGTTAAGATACTTTAGCAAGCAGGACAGGAGTGAGCGCCC
GCTTTAGCGGGGCTATCATGAAGAAGTCTACATCACGGCCTTTCCCCTTT
AATAGTAGCGTTCTCATTGGCGCCCTGATTGTCCATTTACAAGTTGATGT
CGGGAATGCTATTTCACCTCTGTCGCTGATGTGCGGCACTCAAGCAACGA
GCACTACTATCACTCCAAAATACCTATATTGGATGATGGTATTCACATTA
AAGGTGAACGACTCTGCATCCATCTCAGTACCATCGTCAATATGATGGGT
TGCACCCTTCCATTCGCTAATAGTGCGCTACATTGGATTTGGCGTTG
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protein sequence of jgi.p|Nanoce1779_2|344856

>mRNA_10495-protein ID=mRNA_10495-protein|Name=jgi.p|Nanoce1779_2|344856|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MKKSTSRPFPFNSSVLIGALIVHLQVDVGNAISPLSLMCGTQATSTTITP
KYLYWMMVFTLKVNDSASISVPSSI*
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mRNA from alignment at scaffold_52:83758..84154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10495 ID=mRNA_10495|Name=jgi.p|Nanoce1779_2|344856|organism=Nannochloropsis oceanica|type=mRNA|length=397bp|location=Sequence derived from alignment at scaffold_52:83758..84154- (Nannochloropsis oceanica)
GATAGGTAGTTTCCTTCTATTTATACCTTGCTTTCCGACCAAATTTGGAC
GATGTTGAGGCGTTAAGATACTTTAGCAAGCAGGACAGGAGTGAGCGCCC
GCTTTAGCGGGGCTATCATGAAGAAGTCTACATCACGGCCTTTCCCCTTT
AATAGTAGCGTTCTCATTGGCGCCCTGATTGTCCATTTACAAGTTGATGT
CGGGAATGCTATTTCACCTCTGTCGCTGATGTGCGGCACTCAAGCAACGA
GCACTACTATCACTCCAAAATACCTATATTGGATGATGGTATTCACATTA
AAGGTGAACGACTCTGCATCCATCTCAGTACCATCGTCAATATGATGGGT
TGCACCCTTCCATTCGCTAATAGTGCGCTACATTGGATTTGGCGTTG
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Coding sequence (CDS) from alignment at scaffold_52:83758..84154-

>mRNA_10495 ID=mRNA_10495|Name=jgi.p|Nanoce1779_2|344856|organism=Nannochloropsis oceanica|type=CDS|length=228bp|location=Sequence derived from alignment at scaffold_52:83758..84154- (Nannochloropsis oceanica)
ATGAAGAAGTCTACATCACGGCCTTTCCCCTTTAATAGTAGCGTTCTCAT
TGGCGCCCTGATTGTCCATTTACAAGTTGATGTCGGGAATGCTATTTCAC
CTCTGTCGCTGATGTGCGGCACTCAAGCAACGAGCACTACTATCACTCCA
AAATACCTATATTGGATGATGGTATTCACATTAAAGGTGAACGACTCTGC
ATCCATCTCAGTACCATCGTCAATATGA
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Synonyms
Publications