jgi.p|Nanoce1779_2|354629, mRNA_10705 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|354629
Unique NamemRNA_10705
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length508
Alignment locationscaffold_58:21183..21690 +

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Properties
Property NameValue
TranscriptId354715
TrackFilteredModels2
ProteinId354629
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:21183..21690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|354629gene_10705Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|354629mRNA_10705-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10705CDS_10705Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10705 ID=mRNA_10705|Name=jgi.p|Nanoce1779_2|354629|organism=Nannochloropsis oceanica|type=mRNA|length=508bp
TACCGTGGCCTGGATTTTGAAGGAATGAAGGTGAGAGAGGGGAAGGGAAA
AAGGGGAAGAAGGATTGGATAGAGGCGGAGCATGTTTTATTAGGGTGATA
CAGGGCAAGAAAGCAAGAAGACAAATAAACGCAATTAAGAGACCCCAAAA
ATGAGGGGGATAGCAGGGAAAAGATAATGCTCCTTTCCCTCTCGTTCTCG
TTCTTCTTCTCCTTCTCCTCCTCTGCATTCATTTTACACGCCTCCCTTTC
GTGTTATTTTCACCCTGGTGTGCTTCCTTCTTTTCCCCTCTGTGTGCCCA
TCGAGAGACTGGTGGCCGAAGCCCAACACCGCCTGGTACCTCCTCTCTCC
CTCCATCCCTCCCTCCCTCTCTCTTTCTCTTTCTCCTCATTTCTATCGGA
CCTCAGACAAATCGATCAAGAATACAATAGCCTTTATTGCTGCTCTACTT
CTCCTACTTAATTCATTCTAGCACTTAGTCGACATCAGTAATGTAAGTTC
ACGCTATT
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protein sequence of jgi.p|Nanoce1779_2|354629

>mRNA_10705-protein ID=mRNA_10705-protein|Name=jgi.p|Nanoce1779_2|354629|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MLLSLSFSFFFSFSSSAFILHASLSCYFHPGVLPSFPLCVPIERLVAEAQ
HRLVPPLSLHPSLPLSFSFSSFLSDLRQIDQEYNSLYCCSTSPT*
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mRNA from alignment at scaffold_58:21183..21690+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10705 ID=mRNA_10705|Name=jgi.p|Nanoce1779_2|354629|organism=Nannochloropsis oceanica|type=mRNA|length=508bp|location=Sequence derived from alignment at scaffold_58:21183..21690+ (Nannochloropsis oceanica)
TACCGTGGCCTGGATTTTGAAGGAATGAAGGTGAGAGAGGGGAAGGGAAA AAGGGGAAGAAGGATTGGATAGAGGCGGAGCATGTTTTATTAGGGTGATA CAGGGCAAGAAAGCAAGAAGACAAATAAACGCAATTAAGAGACCCCAAAA ATGAGGGGGATAGCAGGGAAAAGATAATGCTCCTTTCCCTCTCGTTCTCG TTCTTCTTCTCCTTCTCCTCCTCTGCATTCATTTTACACGCCTCCCTTTC GTGTTATTTTCACCCTGGTGTGCTTCCTTCTTTTCCCCTCTGTGTGCCCA TCGAGAGACTGGTGGCCGAAGCCCAACACCGCCTGGTACCTCCTCTCTCC CTCCATCCCTCCCTCCCTCTCTCTTTCTCTTTCTCCTCATTTCTATCGGA CCTCAGACAAATCGATCAAGAATACAATAGCCTTTATTGCTGCTCTACTT CTCCTACTTAATTCATTCTAGCACTTAGTCGACATCAGTAATGTAAGTTC ACGCTATT
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Coding sequence (CDS) from alignment at scaffold_58:21183..21690+

>mRNA_10705 ID=mRNA_10705|Name=jgi.p|Nanoce1779_2|354629|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_58:21183..21690+ (Nannochloropsis oceanica)
ATGCTCCTTTCCCTCTCGTTCTCGTTCTTCTTCTCCTTCTCCTCCTCTGC
ATTCATTTTACACGCCTCCCTTTCGTGTTATTTTCACCCTGGTGTGCTTC
CTTCTTTTCCCCTCTGTGTGCCCATCGAGAGACTGGTGGCCGAAGCCCAA
CACCGCCTGGTACCTCCTCTCTCCCTCCATCCCTCCCTCCCTCTCTCTTT
CTCTTTCTCCTCATTTCTATCGGACCTCAGACAAATCGATCAAGAATACA
ATAGCCTTTATTGCTGCTCTACTTCTCCTACTTAA
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Synonyms
Publications