jgi.p|Nanoce1779_2|611859, mRNA_10799 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611859
Unique NamemRNA_10799
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length992
Alignment locationscaffold_59:68856..69847 +

Link to JBrowse

Properties
Property NameValue
TranscriptId611945
TrackFilteredModels2
ProteinId611859
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:68856..69847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611859gene_10799Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611859mRNA_10799-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10799CDS_10799Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10799 ID=mRNA_10799|Name=jgi.p|Nanoce1779_2|611859|organism=Nannochloropsis oceanica|type=mRNA|length=992bp
CGAGGGCGATGCCGACGGGCTCAGGGAAGGAGACACAGAGGGGCCCCTGG
TACCAGCTTCGACCACCTTAAAAGCTTTAAAATCGGGGTCAAGAATCAAG
TCGCATACTCCACCGCAGCAGAAGCACTGATTGGTTGCCGTGTTCCAGTT
GAAGAAAAACGGAGTTGGCTCATTCCCATTGATGGAGCAGTATTCGAAGC
ACTCAGTCGGAGTGTTAATCTCCACAGGCGCCAGCTGCCGATGCTCGCCA
TCAATATCCCTGTGCGAGTCCAGTCCCTTCCTATCATAAAATTCCGACAA
ACGGCGACCTTGACCAAAGGGCGCCAGTTGTCCTGCCTGCAAGCATCGCT
GCCCCTCACCAAAAAGTTGGAAGGGTGTTGCGGGGTTAACGCTCGGGGCC
AGAGTCGGTGCGCACGTGACAGGCATCGAGGAAGCGTGCTTGCCCAACTT
GTCGCCAGGATATCGCACACGCAAGACTACGGGCTCGGCCAGTGGCAAAG
CACAGTAAGTGGACAGGTCCGTGGCGTTGACCAGGTACGCCAGGCCTGTG
ACATTCAGCATCTCAGGGGCACAGTCATCAGCGATCACCATGGCCTTAAA
CACGCGCTTGGAGCTTCTTTTGAAGTCAAAGTCTGTCCAGTAGATTGCCG
TTGTCCCATCTGGATTCTGGATGGTCTGCGCGGGGGAGACAATGAGGGAC
GGGCGGGCCTTGGGCTTGACCACAGACAAGCCAGCCGGCAGCTCCATCTT
GAAATTGACGCCTTGTACAGCCTCTTTGCTTCGAACCTTAACGATGATCT
TGGCTTTTTGTTGGCCTGCCAGGATCCTATGCTTTGCATTAGGTCGCGCC
TTGGCGCCCAGAATCAGACGTGGACAGTCCTGGGCAACGGCAACCGGCGC
CCAGGCGCCGCCGAGAACAGCAAGCACGGGGAAGATAAGGGGCAGGTACA
TGGTCTCTGATTGTATGTAGACTAATGAGACGGCGTGTATCT
back to top

protein sequence of jgi.p|Nanoce1779_2|611859

>mRNA_10799-protein ID=mRNA_10799-protein|Name=jgi.p|Nanoce1779_2|611859|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLAINIPVRVQSLPIIKFRQTATLTKGRQLSCLQASLPLTKKLEGCCGVN
ARGQSRCARDRHRGSVLAQLVARISHTQDYGLGQWQSTVSGQVRGVDQVR
QACDIQHLRGTVISDHHGLKHALGASFEVKVCPVDCRCPIWILDGLRGGD
NEGRAGLGLDHRQASRQLHLEIDALYSLFASNLNDDLGFLLACQDPMLCI
RSRLGAQNQTWTVLGNGNRRPGAAENSKHGEDKGQVHGL*
back to top

mRNA from alignment at scaffold_59:68856..69847+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10799 ID=mRNA_10799|Name=jgi.p|Nanoce1779_2|611859|organism=Nannochloropsis oceanica|type=mRNA|length=992bp|location=Sequence derived from alignment at scaffold_59:68856..69847+ (Nannochloropsis oceanica)
CGAGGGCGATGCCGACGGGCTCAGGGAAGGAGACACAGAGGGGCCCCTGG
TACCAGCTTCGACCACCTTAAAAGCTTTAAAATCGGGGTCAAGAATCAAG
TCGCATACTCCACCGCAGCAGAAGCACTGATTGGTTGCCGTGTTCCAGTT
GAAGAAAAACGGAGTTGGCTCATTCCCATTGATGGAGCAGTATTCGAAGC
ACTCAGTCGGAGTGTTAATCTCCACAGGCGCCAGCTGCCGATGCTCGCCA
TCAATATCCCTGTGCGAGTCCAGTCCCTTCCTATCATAAAATTCCGACAA
ACGGCGACCTTGACCAAAGGGCGCCAGTTGTCCTGCCTGCAAGCATCGCT
GCCCCTCACCAAAAAGTTGGAAGGGTGTTGCGGGGTTAACGCTCGGGGCC
AGAGTCGGTGCGCACGTGACAGGCATCGAGGAAGCGTGCTTGCCCAACTT
GTCGCCAGGATATCGCACACGCAAGACTACGGGCTCGGCCAGTGGCAAAG
CACAGTAAGTGGACAGGTCCGTGGCGTTGACCAGGTACGCCAGGCCTGTG
ACATTCAGCATCTCAGGGGCACAGTCATCAGCGATCACCATGGCCTTAAA
CACGCGCTTGGAGCTTCTTTTGAAGTCAAAGTCTGTCCAGTAGATTGCCG
TTGTCCCATCTGGATTCTGGATGGTCTGCGCGGGGGAGACAATGAGGGAC
GGGCGGGCCTTGGGCTTGACCACAGACAAGCCAGCCGGCAGCTCCATCTT
GAAATTGACGCCTTGTACAGCCTCTTTGCTTCGAACCTTAACGATGATCT
TGGCTTTTTGTTGGCCTGCCAGGATCCTATGCTTTGCATTAGGTCGCGCC
TTGGCGCCCAGAATCAGACGTGGACAGTCCTGGGCAACGGCAACCGGCGC
CCAGGCGCCGCCGAGAACAGCAAGCACGGGGAAGATAAGGGGCAGGTACA
TGGTCTCTGATTGTATGTAGACTAATGAGACGGCGTGTATCT
back to top

Coding sequence (CDS) from alignment at scaffold_59:68856..69847+

>mRNA_10799 ID=mRNA_10799|Name=jgi.p|Nanoce1779_2|611859|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_59:68856..69847+ (Nannochloropsis oceanica)
ATGCTCGCCATCAATATCCCTGTGCGAGTCCAGTCCCTTCCTATCATAAA
ATTCCGACAAACGGCGACCTTGACCAAAGGGCGCCAGTTGTCCTGCCTGC
AAGCATCGCTGCCCCTCACCAAAAAGTTGGAAGGGTGTTGCGGGGTTAAC
GCTCGGGGCCAGAGTCGGTGCGCACGTGACAGGCATCGAGGAAGCGTGCT
TGCCCAACTTGTCGCCAGGATATCGCACACGCAAGACTACGGGCTCGGCC
AGTGGCAAAGCACAGTAAGTGGACAGGTCCGTGGCGTTGACCAGGTACGC
CAGGCCTGTGACATTCAGCATCTCAGGGGCACAGTCATCAGCGATCACCA
TGGCCTTAAACACGCGCTTGGAGCTTCTTTTGAAGTCAAAGTCTGTCCAG
TAGATTGCCGTTGTCCCATCTGGATTCTGGATGGTCTGCGCGGGGGAGAC
AATGAGGGACGGGCGGGCCTTGGGCTTGACCACAGACAAGCCAGCCGGCA
GCTCCATCTTGAAATTGACGCCTTGTACAGCCTCTTTGCTTCGAACCTTA
ACGATGATCTTGGCTTTTTGTTGGCCTGCCAGGATCCTATGCTTTGCATT
AGGTCGCGCCTTGGCGCCCAGAATCAGACGTGGACAGTCCTGGGCAACGG
CAACCGGCGCCCAGGCGCCGCCGAGAACAGCAAGCACGGGGAAGATAAGG
GGCAGGTACATGGTCTCTGA
back to top
Synonyms
Publications