jgi.p|Nanoce1779_2|365965, mRNA_3574 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|365965
Unique NamemRNA_3574
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length853
Alignment locationscaffold_6:690380..691232 -

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Properties
Property NameValue
TranscriptId366051
TrackFilteredModels2
ProteinId365965
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:690380..691232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|365965gene_3574Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|365965mRNA_3574-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3574CDS_3574Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3574 ID=mRNA_3574|Name=jgi.p|Nanoce1779_2|365965|organism=Nannochloropsis oceanica|type=mRNA|length=853bp
CATTTGCCCTATCGTTACTCATTGCTTCTACTCGGACTTTTGGGGGTTGT
TTTTGATGAGGTAGGCTGCCAACCACTCGATCGGATTGCCAGGCCGCTCC
TGGACCAGTTGCGACATACCGTCTAAAAGAATGGGCACCACAGTCTGATC
CAAGTAGGCACGGATGGGCAAGGACTGCATATTTGCCTTGTCTTGCTCTT
GCTGCGCGGCTGCTGCGGCCACTGCCATCTTTTTCTTGTCATCCTCCCCT
GCTCCCTGAATGCCACCTCCGTCCTCGTCGAGGGCAGGGGACGGTGTGTC
CTGCTGCGCATTGCTACCACCACCACCCGTATTCATGGATGCTGCTACGG
TTTCGCTCGTTTCGGGTGCTCCTGCCGCCGCTGGCTGTGTCTGCTTGTGC
GGGAAAGGAGTGGGTTGTAATAAGCGCGCGACCGGTTCTTCGCTTCTTCG
CTTTCTCCTCGCTTTCTCTGTGCACACATACTATTTATCACTCACATGTT
GAATCATCTCGCTGGTCTTTTCCATGGCTTCCTCCTCAGATTTGCCGGGA
TGGTTGTTGGGCTCCTGTCAGCATTGGGGATTGTTGAGTGTGTTTGTGAA
ACATTTCATCATACATAGCCCTCAGCGCGTAGGAACTCCTCTCGCTCCCT
CGCTGAACAACTTTCTGCATACAGATGGACAGTGTACATGCCCAAAAGAC
TAAGCTCTAGCTATTTCCACTCATTCTATTATAGCTACAGCATCTCTCTA
CAGTACAACACATTACTCGCCGCCGCTCCTCTGAAAAAAGCCCTCCTTCT
CCCTCCTTCCTTCCATCCCTCGTCTGGCGGTCTATAGTTTGGCCTCCTTC
GCG
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protein sequence of jgi.p|Nanoce1779_2|365965

>mRNA_3574-protein ID=mRNA_3574-protein|Name=jgi.p|Nanoce1779_2|365965|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MLLRFRSFRVLLPPLAVSACAGKEWVVISARPVLRFFAFSSLSLCTHTIY
HSHVESSRWSFPWLPPQICRDGCWAPVSIGDC*
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mRNA from alignment at scaffold_6:690380..691232-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3574 ID=mRNA_3574|Name=jgi.p|Nanoce1779_2|365965|organism=Nannochloropsis oceanica|type=mRNA|length=853bp|location=Sequence derived from alignment at scaffold_6:690380..691232- (Nannochloropsis oceanica)
CATTTGCCCTATCGTTACTCATTGCTTCTACTCGGACTTTTGGGGGTTGT
TTTTGATGAGGTAGGCTGCCAACCACTCGATCGGATTGCCAGGCCGCTCC
TGGACCAGTTGCGACATACCGTCTAAAAGAATGGGCACCACAGTCTGATC
CAAGTAGGCACGGATGGGCAAGGACTGCATATTTGCCTTGTCTTGCTCTT
GCTGCGCGGCTGCTGCGGCCACTGCCATCTTTTTCTTGTCATCCTCCCCT
GCTCCCTGAATGCCACCTCCGTCCTCGTCGAGGGCAGGGGACGGTGTGTC
CTGCTGCGCATTGCTACCACCACCACCCGTATTCATGGATGCTGCTACGG
TTTCGCTCGTTTCGGGTGCTCCTGCCGCCGCTGGCTGTGTCTGCTTGTGC
GGGAAAGGAGTGGGTTGTAATAAGCGCGCGACCGGTTCTTCGCTTCTTCG
CTTTCTCCTCGCTTTCTCTGTGCACACATACTATTTATCACTCACATGTT
GAATCATCTCGCTGGTCTTTTCCATGGCTTCCTCCTCAGATTTGCCGGGA
TGGTTGTTGGGCTCCTGTCAGCATTGGGGATTGTTGAGTGTGTTTGTGAA
ACATTTCATCATACATAGCCCTCAGCGCGTAGGAACTCCTCTCGCTCCCT
CGCTGAACAACTTTCTGCATACAGATGGACAGTGTACATGCCCAAAAGAC
TAAGCTCTAGCTATTTCCACTCATTCTATTATAGCTACAGCATCTCTCTA
CAGTACAACACATTACTCGCCGCCGCTCCTCTGAAAAAAGCCCTCCTTCT
CCCTCCTTCCTTCCATCCCTCGTCTGGCGGTCTATAGTTTGGCCTCCTTC
GCG
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Coding sequence (CDS) from alignment at scaffold_6:690380..691232-

>mRNA_3574 ID=mRNA_3574|Name=jgi.p|Nanoce1779_2|365965|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_6:690380..691232- (Nannochloropsis oceanica)
ATGCTGCTACGGTTTCGCTCGTTTCGGGTGCTCCTGCCGCCGCTGGCTGT
GTCTGCTTGTGCGGGAAAGGAGTGGGTTGTAATAAGCGCGCGACCGGTTC
TTCGCTTCTTCGCTTTCTCCTCGCTTTCTCTGTGCACACATACTATTTAT
CACTCACATGTTGAATCATCTCGCTGGTCTTTTCCATGGCTTCCTCCTCA
GATTTGCCGGGATGGTTGTTGGGCTCCTGTCAGCATTGGGGATTGTTGA
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Synonyms
Publications