jgi.p|Nanoce1779_2|611889, mRNA_10299 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611889
Unique Name	mRNA_10299
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1312
Alignment location	scaffold_60:15851..18362 +

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Properties


Property Name	Value
TranscriptId	611975
Track	FilteredModels2
ProteinId	611889

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:15851..18362 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611889	gene_10299	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611889	mRNA_10299-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10299	CDS_10299	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_60:15851..18362+
coding sequence from alignment at scaffold_60:15851..18362+

mRNA sequence

>mRNA_10299 ID=mRNA_10299|Name=jgi.p|Nanoce1779_2|611889|organism=Nannochloropsis oceanica|type=mRNA|length=1312bp
ACAGTATCGTCATGATAAGAAGACCAACAGCCACTACCGCCCCCCGCCCC
TCGACCTCCCCTGTCCTCCTCTTATGTCTCCTCCTTTTATCTTCGCCTCG
CGTCGCCCGGGCTTTCGGCCCGCTCCCTCCCTCCTTTTGGCACCCAATCT
CTTCCTCTTCCGGTGATCCAGCGGCCACAGAGGTCAAGCATGCCTGCACT
CCTTCGTCCCCTCCGCCCACCCAGGACCCCCGCTCCGTCGCTGCTCTTCC
CGTCTCCCGTCCCTCCATAGTCAGGGACGTCTTGGCGCTGGACTTCGATG
GGGTTTTATGTCATAGCGTAGATGAAAGCAGCCGGGCAGCTTTTCGGAGT
GTGAAGAAATTGTGGCCACAGCTAGCGACGTATTGCACGGTCGGTGGGAC
ACGAGGCAATGAATGCCCAGCGTGGTTGGGTGATAGTCTCCGGCAGCTCC
GCCCGTTGGTAGAGACAGGCTACGAAAATATCCTCCTGGCCCGATACTGC
ATGGAAAAGTACCTCCAGGGACAGGGCTCCACCCCCGACATCGATATTAC
GGAGTTGTCGGGAAAATGGCAGACACACTTGCGGTCAGCCTTGCTGCAAA
GATACGGGGTGACGGCACAGGAGCTCGTGGATCTCTTCGGGTCGGTGCGC
GACGACTGGCTGGCCGAGGACCGGGAAGGATGGCTCAAGGCCCACTCCTT
CTACGCAGGCACGGACCTGTCTATGGGATGTCCCAGGTTGGAGAGCTATG
TCATCACCACCAAGCAGACGCGCTTCGTCGAGGCCTTACTGGGCGCTCGC
GGCGTGGCCCTCCCTCGCGAGCGTATCTACGGGCTGGGCTCGGGGCCCAA
GACAGACATTTTGGCGCGACTTTCCCGCATTAAGAGAGAGCGGGCCGCCC
AGGATCCGGAGATGGATAGGGAGCCAACGGTGCATTTCATCGAGGACCGC
CTGGAAGCTCTTGAAAAGGTCTGCGCTGATCCTCGTCTGCAGAACGTCCA
GCTGTACCTGGCTGACTGGGGCTATACCACGCCCGAGGCCCGTCAACGCG
CATTGCTCAATCCTCGGATCCGCGTCCTTCAACTGTCCGACTTCGCCTGC
ATGTGCCACGCGCTCGGCGCAGAGACGGAGGAGGAAGGGGGAGAAAGCTG
TTCATTCGCTTGCCTCCAGGCCACATGTTCCTCCTCCTCTTCTTGCAGTA
GCAGCAGCAGCACCAGCAGCAGCACCAGGCCTTTGGTAGAGAAGATAGTG
TTCCAGTCTACCCCTCCCCCTTCTCCCGTCTACACGGACCCATCGCGCAA
AAAGGAGGGAGG

protein sequence of jgi.p|Nanoce1779_2|611889

>mRNA_10299-protein ID=mRNA_10299-protein|Name=jgi.p|Nanoce1779_2|611889|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MSSPPSRRASSRPYWALAAWPSLASVSTGWARGPRQTFWRDFPALRESGP
PRIRRWIGSQRCISSRTAWKLLKRSALILVCRTSSCTWLTGAIPRPRPVN
AHCSILGSASFNCPTSPACATRSAQRRRRKGEKAVHSLASRPHVPPPLLA
VAAAAPAAAPGLW*

mRNA from alignment at scaffold_60:15851..18362+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10299 ID=mRNA_10299|Name=jgi.p|Nanoce1779_2|611889|organism=Nannochloropsis oceanica|type=mRNA|length=2512bp|location=Sequence derived from alignment at scaffold_60:15851..18362+ (Nannochloropsis oceanica)
ACAGTATCGTCATGATAAGAAGACCAACAGCCACTACCGCCCCCCGCCCC
TCGACCTCCCCTGTCCTCCTCTTATGTCTCCTCCTTTTATCTTCGCCTCG
CGTCGCCCGGGCTTTCGGCCCGCTCCCTCCCTCCTTTTGGCACCCAATCT
CTTCCTCTTCCGGTGATCCAGCGGCCACAGAGGTCAAGCATGCCTGCACT
CCTTCGTCCCCTCCGCCCACCCAGGACCCCCGCTCCGTCGCTGCTCTTCC
CGTCTCCCGTCCCTCCATAGTCAGGGACGTCTTGGCGCTGGACTTCGATG
GGGTTTTATGTCATAGCGTAGATGAAAGCAGCCGGGCAGCTTTTCGGAGT
GTGAAGAAATTGTGGCCACAGCTAGCGACGTATTGCACGGTCGGTGGGAC
ACGAGGCAATGAATGCCCAGCGTGGTTGGGTGATAGGTGCGTTGACTCGA
CAGGAGGAGGGAATGCTTGAATCGGGGGGGGGGGGCTTTCGCTTGTATGT
GTGAGGGAGTAATGTCGGTTGCATTGTTTGTAGCTATCTTTACATTTCGT
CTTCACATCTCTCCTTTTCACCCGATTCTGTTACACGGCTGACATTCCCT
TTTCCCCTTCTTCCCTCCTTCTCGCCCCCCCCCCTTTTATTTACAGTCTC
CGGCAGCTCCGCCCGTTGGTAGAGACAGGCTACGAAAATATCCTCCTGGC
CCGATACTGCATGGAAAAGGTAGGTGTTGAGGTTAAGGGGAAAAGAAACG
CGATCAGCTGCATTTCCCTCCACTGATTTTGATCACCGCCTCCCTACATC
CTTCCCTTCAGTACCTCCAGGGACAGGGCTCCACCCCCGACATCGATATT
ACGGAGTTGTCGGGAAAATGGCAGACACACTTGCGGTCAGCCTTGCTGCA
AAGATACGGGGTGACGGCACAGGAGCTCGTGGATGTAAGCATGGAAGGAG
GGAAGGACGGACGGGAAGAGAGAAGAAGGGAAAGGAGGGAAGGAGGGAAG
GAGGGAAGGAGGGTTGGGGGTCGGGTGTGGGGGGGAAGTAGCAAGAGCAC
ATGATTTAAGTTTAATTTAAAATGTATATATTCATATCTATATATCTATA
TCTATCTGTATGTATGATTGCGCACACTAATCACCCTTTCCTCCTTCCCT
ACCTCCGTCCCCCCTCCCTCCCTTCCCTCCCTTCCTCCCTCCCTCAGCTC
TTCGGGTCGGTGCGCGACGACTGGCTGGCCGAGGACCGGGAAGGATGGCT
CAAGGCCCACTCCTTCTACGCAGGCACGGACCTGTCTATGGGATGTCCCA
GGTTGGAGAGCTATGTCATCACCACCAAGCAGACGCGCTTCGTCGAGGCC
TTACTGGGCGCTCGCGGTAGGGAGGGAGGGAATATTGCTTATATATATAT
ATATATATATATATATATATATATATATATAGGGAGGGAGGGAAGGAGGG
AGAATATTGCGAGCATTTCAAGGTTCATGATGTATATTTTGGCATGTCTC
GTCTCTCTGAATCTTCCTCTCTCCATCTCTCCCTCCCTCCTTCCTTCCCC
CCTTTACTTCTCCAGGCGTGGCCCTCCCTCGCGAGCGTATCTACGGGCTG
GGCTCGGGGCCCAAGACAGACATTTTGGCGCGACTTTCCCGCATTAAGAG
AGAGCGGGCCGCCCAGGATCCGGAGATGGATAGGGAGCCAACGGTAAGGA
TGTGGGGATGTAGGGATGTAGGGATGTAGGGAGGTAGGGAGGGATAAATG
TTTACCAACGTCCAACCTCCCCTTTTCTTACAGGTGCATTTCATCGAGGA
CCGCCTGGAAGCTCTTGAAAAGGTCTGCGCTGATCCTCGTCTGCAGGTAC
GTCCCACCTCCCCTCCTTCGTTCCCTCCCTCCCCCCTCCTTCCTTCCCTC
CCTCCCCCCACCTTCCTAAACCCCCAACCCCCTCCCTCCTTCCCTCCTTC
CCTTCCTGCAGAACGTCCAGCTGTACCTGGCTGACTGGGGCTATACCACG
CCCGAGGCCCGTCAACGCGCATTGCTCAATCCTCGGATCCGCGTCCTTCA
ACTGTCCGACTTCGCCTGCATGTGCCACGCGCTCGGCGCAGAGACGGAGG
AGGAAGGGGGAGAAAGGTGCGAAGGAGGAAGGTGGTGTGTGTTTGCGTGT
GCATGGGCGTGGGTGTATGTGTGGGTGTGGGCGTGTGTTGTCTTTGTGGT
GGGCGGTCGTGGCTTTCTTCCCACCAGCCTGAACAATGTTTCTCCGGGGT
CTCTTCCTTTCTTCCCCTCCCTGCTTCCCCCTCACACTTTTTTCCCCTCC
CCCTCTTCTTCCCCTCCCTGCTTCCCCTCCCTCCTTCCCTCCCGCAGCTG
TTCATTCGCTTGCCTCCAGGCCACATGTTCCTCCTCCTCTTCTTGCAGTA
GCAGCAGCAGCACCAGCAGCAGCACCAGGCCTTTGGTAGAGAAGATAGTG
TTCCAGTCTACCCCTCCCCCTTCTCCCGTCTACACGGACCCATCGCGCAA
AAAGGAGGGAGG

Coding sequence (CDS) from alignment at scaffold_60:15851..18362+

>mRNA_10299 ID=mRNA_10299|Name=jgi.p|Nanoce1779_2|611889|organism=Nannochloropsis oceanica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_60:15851..18362+ (Nannochloropsis oceanica)
ATGTCATCACCACCAAGCAGACGCGCTTCGTCGAGGCCTTACTGGGCGCT
CGCGGCGTGGCCCTCCCTCGCGAGCGTATCTACGGGCTGGGCTCGGGGCC
CAAGACAGACATTTTGGCGCGACTTTCCCGCATTAAGAGAGAGCGGGCCG
CCCAGGATCCGGAGATGGATAGGGAGCCAACGGTGCATTTCATCGAGGAC
CGCCTGGAAGCTCTTGAAAAGGTCTGCGCTGATCCTCGTCTGCAGAACGT
CCAGCTGTACCTGGCTGACTGGGGCTATACCACGCCCGAGGCCCGTCAAC
GCGCATTGCTCAATCCTCGGATCCGCGTCCTTCAACTGTCCGACTTCGCC
TGCATGTGCCACGCGCTCGGCGCAGAGACGGAGGAGGAAGGGGGAGAAAG
CTGTTCATTCGCTTGCCTCCAGGCCACATGTTCCTCCTCCTCTTCTTGCA
GTAGCAGCAGCAGCACCAGCAGCAGCACCAGGCCTTTGGTAGATGTCATC
ACCACCAAGCAGACGCGCTTCGTCGAGGCCTTACTGGGCGCTCGCGGCGT
GGCCCTCCCTCGCGAGCGTATCTACGGGCTGGGCTCGGGGCCCAAGACAG
ACATTTTGGCGCGACTTTCCCGCATTAAGAGAGAGCGGGCCGCCCAGGAT
CCGGAGATGGATAGGGAGCCAACGGTGCATTTCATCGAGGACCGCCTGGA
AGCTCTTGAAAAGGTCTGCGCTGATCCTCGTCTGCAGAACGTCCAGCTGT
ACCTGGCTGACTGGGGCTATACCACGCCCGAGGCCCGTCAACGCGCATTG
CTCAATCCTCGGATCCGCGTCCTTCAACTGTCCGACTTCGCCTGCATGTG
CCACGCGCTCGGCGCAGAGACGGAGGAGGAAGGGGGAGAAAGCTGTTCAT
TCGCTTGCCTCCAGGCCACATGTTCCTCCTCCTCTTCTTGCAGTAGCAGC
AGCAGCACCAGCAGCAGCACCAGGCCTTTGGTAGATGTCATCACCACCAA
GCAGACGCGCTTCGTCGAGGCCTTACTGGGCGCTCGCGGCGTGGCCCTCC
CTCGCGAGCGTATCTACGGGCTGGGCTCGGGGCCCAAGACAGACATTTTG
GCGCGACTTTCCCGCATTAAGAGAGAGCGGGCCGCCCAGGATCCGGAGAT
GGATAGGGAGCCAACGGTGCATTTCATCGAGGACCGCCTGGAAGCTCTTG
AAAAGGTCTGCGCTGATCCTCGTCTGCAGAACGTCCAGCTGTACCTGGCT
GACTGGGGCTATACCACGCCCGAGGCCCGTCAACGCGCATTGCTCAATCC
TCGGATCCGCGTCCTTCAACTGTCCGACTTCGCCTGCATGTGCCACGCGC
TCGGCGCAGAGACGGAGGAGGAAGGGGGAGAAAGCTGTTCATTCGCTTGC
CTCCAGGCCACATGTTCCTCCTCCTCTTCTTGCAGTAGCAGCAGCAGCAC
CAGCAGCAGCACCAGGCCTTTGGTAGATGTCATCACCACCAAGCAGACGC
GCTTCGTCGAGGCCTTACTGGGCGCTCGCGGCGTGGCCCTCCCTCGCGAG
CGTATCTACGGGCTGGGCTCGGGGCCCAAGACAGACATTTTGGCGCGACT
TTCCCGCATTAAGAGAGAGCGGGCCGCCCAGGATCCGGAGATGGATAGGG
AGCCAACGGTGCATTTCATCGAGGACCGCCTGGAAGCTCTTGAAAAGGTC
TGCGCTGATCCTCGTCTGCAGAACGTCCAGCTGTACCTGGCTGACTGGGG
CTATACCACGCCCGAGGCCCGTCAACGCGCATTGCTCAATCCTCGGATCC
GCGTCCTTCAACTGTCCGACTTCGCCTGCATGTGCCACGCGCTCGGCGCA
GAGACGGAGGAGGAAGGGGGAGAAAGCTGTTCATTCGCTTGCCTCCAGGC
CACATGTTCCTCCTCCTCTTCTTGCAGTAGCAGCAGCAGCACCAGCAGCA
GCACCAGGCCTTTGGTAGATGTCATCACCACCAAGCAGACGCGCTTCGTC
GAGGCCTTACTGGGCGCTCGCGGCGTGGCCCTCCCTCGCGAGCGTATCTA
CGGGCTGGGCTCGGGGCCCAAGACAGACATTTTGGCGCGACTTTCCCGCA
TTAAGAGAGAGCGGGCCGCCCAGGATCCGGAGATGGATAGGGAGCCAACG
GTGCATTTCATCGAGGACCGCCTGGAAGCTCTTGAAAAGGTCTGCGCTGA
TCCTCGTCTGCAGAACGTCCAGCTGTACCTGGCTGACTGGGGCTATACCA
CGCCCGAGGCCCGTCAACGCGCATTGCTCAATCCTCGGATCCGCGTCCTT
CAACTGTCCGACTTCGCCTGCATGTGCCACGCGCTCGGCGCAGAGACGGA
GGAGGAAGGGGGAGAAAGCTGTTCATTCGCTTGCCTCCAGGCCACATGTT
CCTCCTCCTCTTCTTGCAGTAGCAGCAGCAGCACCAGCAGCAGCACCAGG
CCTTTGGTAG

Synonyms

Publications