jgi.p|Nanoce1779_2|612822, mRNA_10929 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612822
Unique Name	mRNA_10929
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	940
Alignment location	scaffold_68:36307..37246 +

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Properties


Property Name	Value
TranscriptId	612908
Track	FilteredModels2
ProteinId	612822

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_68	supercontig	scaffold_68:36307..37246 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612822	gene_10929	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612822	mRNA_10929-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10929	CDS_10929	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_68:36307..37246+
coding sequence from alignment at scaffold_68:36307..37246+

mRNA sequence

>mRNA_10929 ID=mRNA_10929|Name=jgi.p|Nanoce1779_2|612822|organism=Nannochloropsis oceanica|type=mRNA|length=940bp
TCTTTAGTCCACTTTATTTTTGTATGGCTGTTTCATTTTGAAGTTCGCCG
GCCTTGGTTGGCTGGATTTCCTCGAAGTAGGTTCTATGGGTTTTCTCGCG
ACTATACTGTTTTTCTTCTTTTCCCTGTTGTATTCCTCCCCTATTGTTAC
TTTCTTCTCAACATTACCACATCAGTCTTCGAGTACGTGTGTCCATCCTT
CCACCCTACGTCCCCATTTTTTGGATACCAGCTCTATTCATGCCTCTTCA
TCCTCTTCTTTCGAGGGTATCTTACTCGCCGGCCTCCTCCCTTGTCTATG
TCAATACCTCCCCACTCTCTGTGCACTCAGCCAGCAAGTCCTCCCTACCA
ATTTCCTGTTTATTCAGGGCCTCATCGGGCGGGTTGGATCTGCCGACTTC
CTCAATCTCTTCCACCTTCGTTCACTCGCTGCCTCCGGCATGGTTTGACT
TGCCCTGACTTGTTTCTGTTGAAAGCAAAGTCTAGCCTCACCTCCTCCTT
CATGTTGTAATGTATTTGTATTTATTGAATTGCTACCTCGGTGGGGTCGG
CATTGGCCCTCTGACTTCATGATCACTGACTTAACACTTCTTCGATCGTC
TCCCTCCCCCTCCTTCTCTTCGTAATCCACCTTTCCCTTCCCTCTCCCGC
GCCCTTGCCATTTAAACGAGGGAAAGCGACAGCGACACGTCGGAAGGAAA
AGAAGGAGGACATGATGGGTGCTCGTCGCTCTTGCTGCTGTGAAGGGAGA
CAGAGGGTGCTTCGAGCCTCTTCTTTTTGTGGACTTTGCCGGGGCAGAAA
TGGGAAGGAGGAAGTAAAGGAGGACCGGAAGGAGGAAGACCGTCCCCTTG
TGGTCGAGCCCAAAGACTTTCTCGCTTGAACGTCTTCTCTCCCTATCCGC
ACCTTTATATTCTCCTCCTCCTCCTCCTCCTCCTCTTCCA

protein sequence of jgi.p|Nanoce1779_2|612822

>mRNA_10929-protein ID=mRNA_10929-protein|Name=jgi.p|Nanoce1779_2|612822|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MGFLATILFFFFSLLYSSPIVTFFSTLPHQSSSTCVHPSTLRPHFLDTSS
IHASSSSSFEGILLAGLLPCLCQYLPTLCALSQQVLPTNFLFIQGLIGRV
GSADFLNLFHLRSLAASGMV*

mRNA from alignment at scaffold_68:36307..37246+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10929 ID=mRNA_10929|Name=jgi.p|Nanoce1779_2|612822|organism=Nannochloropsis oceanica|type=mRNA|length=940bp|location=Sequence derived from alignment at scaffold_68:36307..37246+ (Nannochloropsis oceanica)
TCTTTAGTCCACTTTATTTTTGTATGGCTGTTTCATTTTGAAGTTCGCCG
GCCTTGGTTGGCTGGATTTCCTCGAAGTAGGTTCTATGGGTTTTCTCGCG
ACTATACTGTTTTTCTTCTTTTCCCTGTTGTATTCCTCCCCTATTGTTAC
TTTCTTCTCAACATTACCACATCAGTCTTCGAGTACGTGTGTCCATCCTT
CCACCCTACGTCCCCATTTTTTGGATACCAGCTCTATTCATGCCTCTTCA
TCCTCTTCTTTCGAGGGTATCTTACTCGCCGGCCTCCTCCCTTGTCTATG
TCAATACCTCCCCACTCTCTGTGCACTCAGCCAGCAAGTCCTCCCTACCA
ATTTCCTGTTTATTCAGGGCCTCATCGGGCGGGTTGGATCTGCCGACTTC
CTCAATCTCTTCCACCTTCGTTCACTCGCTGCCTCCGGCATGGTTTGACT
TGCCCTGACTTGTTTCTGTTGAAAGCAAAGTCTAGCCTCACCTCCTCCTT
CATGTTGTAATGTATTTGTATTTATTGAATTGCTACCTCGGTGGGGTCGG
CATTGGCCCTCTGACTTCATGATCACTGACTTAACACTTCTTCGATCGTC
TCCCTCCCCCTCCTTCTCTTCGTAATCCACCTTTCCCTTCCCTCTCCCGC
GCCCTTGCCATTTAAACGAGGGAAAGCGACAGCGACACGTCGGAAGGAAA
AGAAGGAGGACATGATGGGTGCTCGTCGCTCTTGCTGCTGTGAAGGGAGA
CAGAGGGTGCTTCGAGCCTCTTCTTTTTGTGGACTTTGCCGGGGCAGAAA
TGGGAAGGAGGAAGTAAAGGAGGACCGGAAGGAGGAAGACCGTCCCCTTG
TGGTCGAGCCCAAAGACTTTCTCGCTTGAACGTCTTCTCTCCCTATCCGC
ACCTTTATATTCTCCTCCTCCTCCTCCTCCTCCTCTTCCA

Coding sequence (CDS) from alignment at scaffold_68:36307..37246+

>mRNA_10929 ID=mRNA_10929|Name=jgi.p|Nanoce1779_2|612822|organism=Nannochloropsis oceanica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_68:36307..37246+ (Nannochloropsis oceanica)
ATGGGTTTTCTCGCGACTATACTGTTTTTCTTCTTTTCCCTGTTGTATTC
CTCCCCTATTGTTACTTTCTTCTCAACATTACCACATCAGTCTTCGAGTA
CGTGTGTCCATCCTTCCACCCTACGTCCCCATTTTTTGGATACCAGCTCT
ATTCATGCCTCTTCATCCTCTTCTTTCGAGGGTATCTTACTCGCCGGCCT
CCTCCCTTGTCTATGTCAATACCTCCCCACTCTCTGTGCACTCAGCCAGC
AAGTCCTCCCTACCAATTTCCTGTTTATTCAGGGCCTCATCGGGCGGGTT
GGATCTGCCGACTTCCTCAATCTCTTCCACCTTCGTTCACTCGCTGCCTC
CGGCATGGTTTGA

Synonyms

Publications