jgi.p|Nanoce1779_2|584230, gene_3024 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584230
Unique Namegene_3024
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_7:480211..482750 -

Link to JBrowse

Properties
Property NameValue
TranscriptId584316
ProteinId584230
Product name2-dehydro-3-deoxyphosphoheptonate aldolase-like protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:480211..482750 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00038493-deoxy-7-phosphoheptulonate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0009073aromatic amino acid family biosynthetic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL092ncniL092Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02220NO05G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584230mRNA_3024-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584230mRNA_3024Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|584230

>mRNA_3024-protein ID=mRNA_3024-protein|Name=jgi.p|Nanoce1779_2|584230|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MVINKASSWLSIATLGVAALLVAVDEGQAFVQPPSRMPSGTCPLMEARTR
GLVRAVQSMPPPTTTSTSSSAGKGSWSPESWRNYTPRQMPIYEDKAELEK
VEQALAKSSPLVFAGECRQLHEHLAKAAMGQSFLLMGGDCAESFKEFHVD
TVRDTFRVLLQMALVLTFGGSMPVIKVGRMAGQFAKPRSEPHEEVDGLRL
PSYRGDIINSEAFTEEGRRNDPWRMLDAYHQSTQTLNILRAFATGGYADI
SRLHAWNLDFVEKSEEGSRYRKLASKVDESLRFMKAIGVNTESATFKQAQ
FYTAHECLLLSYEQALTRQDSTTGKWYDCSAHMLWIGERTRQLDGAHLEF
TRGIGNPLGVKISDKITPDELLEVIDNLNPNNIPGRLSIIVRMGADKLRE
KLPALIRAVQKEGRFVVWISDPVHGNTIKAENGLKTRPFNKIRDELRAFF
DVHDQMGTHPGGVHLEMTGKDVTECTGGTIQDIKVDDLNKRYHTHCDPRL
NGVQALELAFLIAERMRSRTGLPPLFNDA*
back to top
Synonyms
Publications