jgi.p|Nanoce1779_2|584239, mRNA_3026 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584239
Unique NamemRNA_3026
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1177
Alignment locationscaffold_7:486109..487393 +

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Properties
Property NameValue
TranscriptId584325
TrackFilteredModels2
ProteinId584239
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:486109..487393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584239gene_3026Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584239mRNA_3026-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3026CDS_3026Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3026 ID=mRNA_3026|Name=jgi.p|Nanoce1779_2|584239|organism=Nannochloropsis oceanica|type=mRNA|length=1177bp
CAGCCCATCCACCACCACACAACACCACACAGACACCACAACTTTGGGGA
GCGTCAGTGGCACCAAGTTTGGCGTCCCCACAAGCGACAAGCACCATGGC
AGAAGGCGCTCTTTTGGATCCCCAGAAGCTCTCGTTGTGCTATGCGAAGC
TCTTTCAGAAACAACAAGTCTTTGCCGCCCAGCAGGCCGCAGTCTTTGCC
AAGCTGGCCGCTGGGGACAAGGCTACCCTCGAAGCTGTGCTGAAGCTGCC
CGACGCACAGCCCTCCCCGGAGGAGGCGAACGGAGCGGGAAATGGGAAGA
AGCGCAAGGCGAAGCGGGATCCGGACTTGCCGAAACGGCCCAAGAGCGGG
TACCAGTTTTATGTCTGTGAGCACACCCCGACGCTGCGTGCGGCCCAGCC
AGAGGCCAAGATGAAGGAGCTCATGGGGGTGCTAGCTAACGACTGGAAAA
AGCTGAGCGAAGAGGAGAAGGAAAAGTATCAGAAGCTTGCAGTGGAGGAG
AAGACAGTGTACCAGGACAAGATGGATAGCTACAAGGCCAACAAAACCGG
CGGCGGTGGTGGGGGGGAGGGAGGAGCCGCTGTCAAGGCGACTGCCCCGG
TGATGGCGTCGGCCAAGGATGCAGAGGAGCAGGAGGAGGAAGAGGACACA
GAGTCAGACACGTCAGAGGAGAAAGAGGTGAAGAAGTCCAAGAAGAAGAA
ACACAAGAAGCACAAGAAGCACCACGACAAGACCCGAGAAGAGTCCTAAA
ACAGGGAGAAGGCCACGAAAGGGACGCTGAGAATGGGATAAAATGGGGAC
TATGCGTTTATTTTTCGGTCGGGTTATGCACATGATACGATTGTGGGAAG
TATATTTTTTCTACTACAACATCAACAACAACAGTACCCACTCCCACACC
ACACACCGAACGGTCCAGCTAGAGATGAAAGAAACAGGAAAGAGAACGCC
ACGTCAAGGCCCAAAACAGTATGGCTTGTCAGTGTCGTCTTTCCACGAGC
ATATTGTGCGAATGTGTGAATGTAAGAGAGAAAGAAGCTAAGAGGAAAAA
GCCATGACAGAAGATCGCCCAGCTGCTGATGGAAAGGAAAATAAGGAACA
AAAGAAAGTTTCAGTCGTCATCCTCCTCCCACGGGATGAAACGTGAGCGA
AAGAAATGACAGACATTATGCATTATA
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protein sequence of jgi.p|Nanoce1779_2|584239

>mRNA_3026-protein ID=mRNA_3026-protein|Name=jgi.p|Nanoce1779_2|584239|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MAEGALLDPQKLSLCYAKLFQKQQVFAAQQAAVFAKLAAGDKATLEAVLK
LPDAQPSPEEANGAGNGKKRKAKRDPDLPKRPKSGYQFYVCEHTPTLRAA
QPEAKMKELMGVLANDWKKLSEEEKEKYQKLAVEEKTVYQDKMDSYKANK
TGGGGGGEGGAAVKATAPVMASAKDAEEQEEEEDTESDTSEEKEVKKSKK
KKHKKHKKHHDKTREES*
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mRNA from alignment at scaffold_7:486109..487393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3026 ID=mRNA_3026|Name=jgi.p|Nanoce1779_2|584239|organism=Nannochloropsis oceanica|type=mRNA|length=1285bp|location=Sequence derived from alignment at scaffold_7:486109..487393+ (Nannochloropsis oceanica)
CAGCCCATCCACCACCACACAACACCACACAGACACCACAACTTTGGGGA
GCGTCAGTGGCACCAAGTTTGGCGTCCCCACAAGCGACAAGGTAAGCACT
TATTTGCCCCCCTTCAGCAAAATCCTTCGCGCACGATTGACACACAACCG
CTTTTCCGGCCCAAAACTTTAACACACCTAGATCACACAACACCACCAGC
ACCATGGCAGAAGGCGCTCTTTTGGATCCCCAGAAGCTCTCGTTGTGCTA
TGCGAAGCTCTTTCAGAAACAACAAGTCTTTGCCGCCCAGCAGGCCGCAG
TCTTTGCCAAGCTGGCCGCTGGGGACAAGGCTACCCTCGAAGCTGTGCTG
AAGCTGCCCGACGCACAGCCCTCCCCGGAGGAGGCGAACGGAGCGGGAAA
TGGGAAGAAGCGCAAGGCGAAGCGGGATCCGGACTTGCCGAAACGGCCCA
AGAGCGGGTACCAGTTTTATGTCTGTGAGCACACCCCGACGCTGCGTGCG
GCCCAGCCAGAGGCCAAGATGAAGGAGCTCATGGGGGTGCTAGCTAACGA
CTGGAAAAAGCTGAGCGAAGAGGAGAAGGAAAAGTATCAGAAGCTTGCAG
TGGAGGAGAAGACAGTGTACCAGGACAAGATGGATAGCTACAAGGCCAAC
AAAACCGGCGGCGGTGGTGGGGGGGAGGGAGGAGCCGCTGTCAAGGCGAC
TGCCCCGGTGATGGCGTCGGCCAAGGATGCAGAGGAGCAGGAGGAGGAAG
AGGACACAGAGTCAGACACGTCAGAGGAGAAAGAGGTGAAGAAGTCCAAG
AAGAAGAAACACAAGAAGCACAAGAAGCACCACGACAAGACCCGAGAAGA
GTCCTAAAACAGGGAGAAGGCCACGAAAGGGACGCTGAGAATGGGATAAA
ATGGGGACTATGCGTTTATTTTTCGGTCGGGTTATGCACATGATACGATT
GTGGGAAGTATATTTTTTCTACTACAACATCAACAACAACAGTACCCACT
CCCACACCACACACCGAACGGTCCAGCTAGAGATGAAAGAAACAGGAAAG
AGAACGCCACGTCAAGGCCCAAAACAGTATGGCTTGTCAGTGTCGTCTTT
CCACGAGCATATTGTGCGAATGTGTGAATGTAAGAGAGAAAGAAGCTAAG
AGGAAAAAGCCATGACAGAAGATCGCCCAGCTGCTGATGGAAAGGAAAAT
AAGGAACAAAAGAAAGTTTCAGTCGTCATCCTCCTCCCACGGGATGAAAC
GTGAGCGAAAGAAATGACAGACATTATGCATTATA
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Coding sequence (CDS) from alignment at scaffold_7:486109..487393+

>mRNA_3026 ID=mRNA_3026|Name=jgi.p|Nanoce1779_2|584239|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_7:486109..487393+ (Nannochloropsis oceanica)
ATGGCAGAAGGCGCTCTTTTGGATCCCCAGAAGCTCTCGTTGTGCTATGC
GAAGCTCTTTCAGAAACAACAAGTCTTTGCCGCCCAGCAGGCCGCAGTCT
TTGCCAAGCTGGCCGCTGGGGACAAGGCTACCCTCGAAGCTGTGCTGAAG
CTGCCCGACGCACAGCCCTCCCCGGAGGAGGCGAACGGAGCGGGAAATGG
GAAGAAGCGCAAGGCGAAGCGGGATCCGGACTTGCCGAAACGGCCCAAGA
GCGGGTACCAGTTTTATGTCTGTGAGCACACCCCGACGCTGCGTGCGGCC
CAGCCAGAGGCCAAGATGAAGGAGCTCATGGGGGTGCTAGCTAACGACTG
GAAAAAGCTGAGCGAAGAGGAGAAGGAAAAGTATCAGAAGCTTGCAGTGG
AGGAGAAGACAGTGTACCAGGACAAGATGGATAGCTACAAGGCCAACAAA
ACCGGCGGCGGTGGTGGGGGGGAGGGAGGAGCCGCTGTCAAGGCGACTGC
CCCGGTGATGGCGTCGGCCAAGGATGCAGAGGAGCAGGAGGAGGAAGAGG
ACACAGAGTCAGACACGTCAGAGGAGAAAGAGGTGAAGAAGTCCAAGAAG
AAGAAACACAAGAAGCACAAGAAGCACCACGACAAGACCCGAGAAGAGTC
CTAA
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Synonyms
Publications