jgi.p|Nanoce1779_2|565124, mRNA_3879 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565124
Unique NamemRNA_3879
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length390
Alignment locationscaffold_8:291234..291820 -

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Properties
Property NameValue
TranscriptId565210
TrackFilteredModels2
ProteinId565124
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:291234..291820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565124gene_3879Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565124mRNA_3879-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3879CDS_3879Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3879 ID=mRNA_3879|Name=jgi.p|Nanoce1779_2|565124|organism=Nannochloropsis oceanica|type=mRNA|length=390bp
ATGCCGTTGCTGGCACCCGACAAGGCGGTGAAGCAGGGCAAAGACCCCAA
CGAGGTGTTTGAAAAAGACCCGGTTCGCGTGTATAGACTGGATAAAGAGA
ACAAAACGTGGGTGGATATGGGCAAGGGCTCGTTAGGGCTGTACCGCGAC
ACGGCCGCCAGAAAACAGTGGATGGCCGTCCGGAACATCACGGGCAAAGT
CGTCTTGTCCTGCGGGTTGAGCTCTCAAATGAATTTCAGCGCCATGGACC
AATCTAGCAGTGTGGTGTTTGCGTGCAAGCCGGTCTTTGACGGGACGCCT
GCGAAGGACATGATGACGTTGCGGATTAAGGTGCGGGATGGGGTACAGGA
AGTAGTGGCGAAGTTGAATTCTTTGAAAGACGGGAAATAG
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protein sequence of jgi.p|Nanoce1779_2|565124

>mRNA_3879-protein ID=mRNA_3879-protein|Name=jgi.p|Nanoce1779_2|565124|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MPLLAPDKAVKQGKDPNEVFEKDPVRVYRLDKENKTWVDMGKGSLGLYRD
TAARKQWMAVRNITGKVVLSCGLSSQMNFSAMDQSSSVVFACKPVFDGTP
AKDMMTLRIKVRDGVQEVVAKLNSLKDGK*
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mRNA from alignment at scaffold_8:291234..291820-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3879 ID=mRNA_3879|Name=jgi.p|Nanoce1779_2|565124|organism=Nannochloropsis oceanica|type=mRNA|length=587bp|location=Sequence derived from alignment at scaffold_8:291234..291820- (Nannochloropsis oceanica)
ATGCCGTTGCTGGCACCCGACAAGGCGGTGAAGCAGGGCAAAGACCCCAA
CGAGGTGTTTGAAAAAGACCCGGTTCGCGTGTATAGACTGGATAAAGAGA
ACAAAACGTGGGTGGATATGGGCAAGGGCTCGTTAGGTACGTCTTGGTGT
CTTCATTCTCTTATTCTTACGTGTTTCTAGTTGATTGCCATGTTTGTCTT
TTCCCGTGTATTGATGGTCATGTGTATCTTTGTCATGCACACCTAAGGTC
AGGGCACCTCGTGTTCTAACCCTTCTCACTTTTCCCTGCCTGCTTCCTTT
CCCTCTGCCTCCCTCCGTCCCTCCCTCCTTCAGGGCTGTACCGCGACACG
GCCGCCAGAAAACAGTGGATGGCCGTCCGGAACATCACGGGCAAAGTCGT
CTTGTCCTGCGGGTTGAGCTCTCAAATGAATTTCAGCGCCATGGACCAAT
CTAGCAGTGTGGTGTTTGCGTGCAAGCCGGTCTTTGACGGGACGCCTGCG
AAGGACATGATGACGTTGCGGATTAAGGTGCGGGATGGGGTACAGGAAGT
AGTGGCGAAGTTGAATTCTTTGAAAGACGGGAAATAG
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Coding sequence (CDS) from alignment at scaffold_8:291234..291820-

>mRNA_3879 ID=mRNA_3879|Name=jgi.p|Nanoce1779_2|565124|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_8:291234..291820- (Nannochloropsis oceanica)
GGCTGTACCGCGACACGGCCGCCAGAAAACAGTGGATGGCCGTCCGGAAC
ATCACGGGCAAAGTCGTCTTGTCCTGCGGGTTGAGCTCTCAAATGAATTT
CAGCGCCATGGACCAATCTAGCAGTGTGGTGTTTGCGTGCAAGCCGGTCT
TTGACGGGACGCCTGCGAAGGACATGATGACGTTGCGGATTAAGGTGCGG
GATGGGGTACAGGAAGTAGTGGCGAAGTTGAATTCTTTGAAAGACGGGAA
ATAGATGCCGTTGCTGGCACCCGACAAGGCGGTGAAGCAGGGCAAAGACC
CCAACGAGGTGTTTGAAAAAGACCCGGTTCGCGTGTATAGACTGGATAAA
GAGAACAAAACGTGGGTGGATATGGGCAAGGGCTCGTTAGGGCTGTACCG
CGACACGGCCGCCAGAAAACAGTGGATGGCCGTCCGGAACATCACGGGCA
AAGTCGTCTTGTCCTGCGGGTTGAGCTCTCAAATGAATTTCAGCGCCATG
GACCAATCTAGCAGTGTGGTGTTTGCGTGCAAGCCGGTCTTTGACGGGAC
GCCTGCGAAGGACATGATGACGTTGCGGATTAAGGTGCGGGATGGGGTAC
AGGAAGTAGTGGCGAAGTTGAATTCTTTGAAAGACGGGAAATAGATGCCG
TTGCTGGCACCCGACAAGGCGGTGAAGCAGGGCAAAGACCCCAACGAGGT
GTTTGAAAAAGACCCGGTTCGCGTGTATAGACTGGATAAAGAGAACAAAA
CGTGGGTGGATATGGGCAAGGGCTCGTTAG
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Synonyms
Publications