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Properties
| Property Name | Value |
|---|
| TranscriptId | 554077 |
| Track | FilteredModels2 |
| ProteinId | 553991 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:232680..233953 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3856 ID=mRNA_3856|Name=jgi.p|Nanoce1779_2|553991|organism=Nannochloropsis oceanica|type=mRNA|length=1092bp
ACAGGCTAGCTACCGGTAGGAGCGCCGGACAGGACAAGCGAGACAGACGT
CATACGAAGTGCGCTATAAAAGGATGGAGAACGGCACAAGCAGCAGCGGT
GGTCCCGAAGTTGAGCACCCTCTCCAGCAGCCTTGGCAGCTCTACCTCCA
CTATCCGACTATAACGCAGTCCCTGGAAAGTTATGGCAAGGAAGCGTACC
AAGCATTGTGCGAGTTCTCGACGGTGGAGGGGTTTTGGGCCTACTTTCAT
TTCTTGCCCAGGCCCAGTGATATCTTCACTGAGGTGGTTGCAGGCAGCTA
CCCACCCCAGTTGCTGAAGCGGAAGTTAGACGGGAAGAATTTGGAGGCGT
TTGGATTGTTTAAGAAGGGTGTCAAACCTGAATGGGAAGACCCACTTAAC
ATGCAAGGCGGTCACTGGGAGTGTCGTCGTGAGCCGGCTTTCGACCTCCC
TACCCTTGATAAAATGTGGCGCACGACTGTCATGGCCTTGATAGGTGAGA
CTTTGGAGGACGGAAATGCCATCACCGGTGCAAGGGTGGTGGATAAGAGT
AGGAATAAGCGGCCGGAGTATCGCCTGGAAATTTGGACGGCTGTGAAGGA
AGAGAGAGTGAACGAGGGAATTCGGATGAAGTTGATTGAGGCCCTGAAGG
AGGGCCTAGGAGAGGGGGGAAGGGACGGAGGGAAGATCCCTGAGTTCGTT
TGGAAGGAGCACAGTCAAATTGTGAATACAGGTCTGGAGGGATACGGGGG
GTCGACGGTGAGCTTGAGTGGTAGTGCAGGCGGAGGCGGCGGCGGCGGAG
GAGGGGGGGGAGGTAAGGCGGGAGGGTTGGGGTCGGCATCGGGGGTTATC
AGGGACAAGGTTATGGGCGCGCTGAGTTCATGAGGGAGAGAGGGAGAGAG
GGAGGGAAGGAAGGAGAGATGGATTTCCGCAGTCGACGACATGAGACAGA
CTGCGGCTACAGTACAAATGACGTAAAGAAAGGGAGGACGGGGTAAAAGA
AGACCCGAAAAGAAAAACGTTGGACCGACAGCAGTTATAAAAATCACGGG
AAAACACAAATACTCCGAAAGAACCTAGACAAACTCTACACG back to topprotein sequence of jgi.p|Nanoce1779_2|553991 >mRNA_3856-protein ID=mRNA_3856-protein|Name=jgi.p|Nanoce1779_2|553991|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MENGTSSSGGPEVEHPLQQPWQLYLHYPTITQSLESYGKEAYQALCEFST
VEGFWAYFHFLPRPSDIFTEVVAGSYPPQLLKRKLDGKNLEAFGLFKKGV
KPEWEDPLNMQGGHWECRREPAFDLPTLDKMWRTTVMALIGETLEDGNAI
TGARVVDKSRNKRPEYRLEIWTAVKEERVNEGIRMKLIEALKEGLGEGGR
DGGKIPEFVWKEHSQIVNTGLEGYGGSTVSLSGSAGGGGGGGGGGGGKAG
GLGSASGVIRDKVMGALSS* back to topmRNA from alignment at scaffold_8:232680..233953+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3856 ID=mRNA_3856|Name=jgi.p|Nanoce1779_2|553991|organism=Nannochloropsis oceanica|type=mRNA|length=1274bp|location=Sequence derived from alignment at scaffold_8:232680..233953+ (Nannochloropsis oceanica)
ACAGGCTAGCTACCGGTAGGAGCGCCGGACAGGACAAGCGAGACAGACGT
CATACGAAGTGCGCTATAAAAGGATGGAGAACGGCACAAGCAGCAGCGGT
GGTCCCGAAGTTGAGCACCCTCTCCAGCAGCCTTGGCAGCTCTACCTCCA
CTATCCGACTATAACGCAGTCCCTGGAAAGTTATGGCAAGGAAGCGTACC
AAGCATTGTGCGAGTTCTCGACGGTGGAGGGGTTTTGGGCCTACTTTCAT
TTCTTGCCCAGGCCCAGTGATATCTTCACTGAGGTGGTTGCAGGCAGCTA
CCCACCCCAGTTGCTGAAGCGGAAGTTAGACGGGAAGAATTTGGAGGCGT
TTGGATTGTTTAAGAAGGTGCGTTTGATTCCTTTCCGGAGGGTGGGAGAG
AGGGGAGGAAGGTGTGGTGGTAATTGTGCTTGGGTGAGGAGAAAGAAAGA
GAATAGTGTGTAGGTTTGTCTAGGGGGAGGAGTCGAGAGGGGGCACTCAT
CTGCTCTTCATTCCACCCACCTCTCCCCATTCCCCCCTCCACATCTCAGG
GTGTCAAACCTGAATGGGAAGACCCACTTAACATGCAAGGCGGTCACTGG
GAGTGTCGTCGTGAGCCGGCTTTCGACCTCCCTACCCTTGATAAAATGTG
GCGCACGACTGTCATGGCCTTGATAGGTGAGACTTTGGAGGACGGAAATG
CCATCACCGGTGCAAGGGTGGTGGATAAGAGTAGGAATAAGCGGCCGGAG
TATCGCCTGGAAATTTGGACGGCTGTGAAGGAAGAGAGAGTGAACGAGGG
AATTCGGATGAAGTTGATTGAGGCCCTGAAGGAGGGCCTAGGAGAGGGGG
GAAGGGACGGAGGGAAGATCCCTGAGTTCGTTTGGAAGGAGCACAGTCAA
ATTGTGAATACAGGTCTGGAGGGATACGGGGGGTCGACGGTGAGCTTGAG
TGGTAGTGCAGGCGGAGGCGGCGGCGGCGGAGGAGGGGGGGGAGGTAAGG
CGGGAGGGTTGGGGTCGGCATCGGGGGTTATCAGGGACAAGGTTATGGGC
GCGCTGAGTTCATGAGGGAGAGAGGGAGAGAGGGAGGGAAGGAAGGAGAG
ATGGATTTCCGCAGTCGACGACATGAGACAGACTGCGGCTACAGTACAAA
TGACGTAAAGAAAGGGAGGACGGGGTAAAAGAAGACCCGAAAAGAAAAAC
GTTGGACCGACAGCAGTTATAAAAATCACGGGAAAACACAAATACTCCGA
AAGAACCTAGACAAACTCTACACG back to topCoding sequence (CDS) from alignment at scaffold_8:232680..233953+ >mRNA_3856 ID=mRNA_3856|Name=jgi.p|Nanoce1779_2|553991|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_8:232680..233953+ (Nannochloropsis oceanica)
ATGGAGAACGGCACAAGCAGCAGCGGTGGTCCCGAAGTTGAGCACCCTCT
CCAGCAGCCTTGGCAGCTCTACCTCCACTATCCGACTATAACGCAGTCCC
TGGAAAGTTATGGCAAGGAAGCGTACCAAGCATTGTGCGAGTTCTCGACG
GTGGAGGGGTTTTGGGCCTACTTTCATTTCTTGCCCAGGCCCAGTGATAT
CTTCACTGAGGTGGTTGCAGGCAGCTACCCACCCCAGTTGCTGAAGCGGA
AGTTAGACGGGAAGAATTTGGAGGCGTTTGGATTGTTTAAGAAGGGTGTC
AAACCTGAATGGGAAGACCCACTTAACATGCAAGGCGGTCACTGGGAGTG
TCGTCGTGAGCCGGCTTTCGACCTCCCTACCCTTGATAAAATGTGGCGCA
CGACTGTCATGGCCTTGATAGGTGAGACTTTGGAGGACGGAAATGCCATC
ACCGGTGCAAGGGTGGTGGATAAGAGTAGGAATAAGCGGCCGGAGTATCG
CCTGGAAATTTGGACGGCTGTGAAGGAAGAGAGAGTGAACGAGGGAATTC
GGATGAAGTTGATTGAGGCCCTGAAGGAGGGCCTAGGAGAGGGGGGAAGG
GACGGAGGGAAGATCCCTGAGTTCGTTTGGAAGGAGCACAGTCAAATTGT
GAATACAGGTCTGGAGGGATACGGGGGGTCGACGGTGAGCTTGAGTGGTA
GTGCAGGCGGAGGCGGCGGCGGCGGAGGAGGGGGGGGAGGTAAGGCGGGA
GGGTTGGGGTCGGCATCGGGGGTTATCAGGGACAAGGTTATGGGCGCGCT
GAGTTCATGAATGGAGAACGGCACAAGCAGCAGCGGTGGTCCCGAAGTTG
AGCACCCTCTCCAGCAGCCTTGGCAGCTCTACCTCCACTATCCGACTATA
ACGCAGTCCCTGGAAAGTTATGGCAAGGAAGCGTACCAAGCATTGTGCGA
GTTCTCGACGGTGGAGGGGTTTTGGGCCTACTTTCATTTCTTGCCCAGGC
CCAGTGATATCTTCACTGAGGTGGTTGCAGGCAGCTACCCACCCCAGTTG
CTGAAGCGGAAGTTAGACGGGAAGAATTTGGAGGCGTTTGGATTGTTTAA
GAAGGGTGTCAAACCTGAATGGGAAGACCCACTTAACATGCAAGGCGGTC
ACTGGGAGTGTCGTCGTGAGCCGGCTTTCGACCTCCCTACCCTTGATAAA
ATGTGGCGCACGACTGTCATGGCCTTGATAGGTGAGACTTTGGAGGACGG
AAATGCCATCACCGGTGCAAGGGTGGTGGATAAGAGTAGGAATAAGCGGC
CGGAGTATCGCCTGGAAATTTGGACGGCTGTGAAGGAAGAGAGAGTGAAC
GAGGGAATTCGGATGAAGTTGATTGAGGCCCTGAAGGAGGGCCTAGGAGA
GGGGGGAAGGGACGGAGGGAAGATCCCTGAGTTCGTTTGGAAGGAGCACA
GTCAAATTGTGAATACAGGTCTGGAGGGATACGGGGGGTCGACGGTGAGC
TTGAGTGGTAGTGCAGGCGGAGGCGGCGGCGGCGGAGGAGGGGGGGGAGG
TAAGGCGGGAGGGTTGGGGTCGGCATCGGGGGTTATCAGGGACAAGGTTA
TGGGCGCGCTGAGTTCATGA back to top
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