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Properties
Property Name | Value |
TranscriptId | 585762 |
Track | FilteredModels2 |
ProteinId | 585676 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_8 | supercontig | scaffold_8:269864..272270 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3869 ID=mRNA_3869|Name=jgi.p|Nanoce1779_2|585676|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp AAAATCGCGGAAGAGGAGAGAGAGGGAGGGAGGGAAGGAGGGATTGTGGC AATGGAAGGGATGGAGGGAAGGGTGGGCATTTAAAAGGTGGCGAATTTGG GTGCATCGGCATCGGAAGAAGAGGCAACAGCGAGCACTGACAGAAGCAGA GGAACGTCGGTTGAAGCTCTTGCAGTCTGCTTATCCTACATGGCATATCA GTGGTGGGAACAGCAACGGCCGGAGCTGCACCGCTTTATTCGAAGGGAGA AGAGACAGGGGGGAGATAGGGGAGGGAGGAAGGCGTCATTTCCCTACACC TCGCCCTTGGAATGGTGATGGTGCGGGGTGGAATGCGTATGGGACGGGAG GGAGGGGCCATCTTGCACTTTCTGGTGGGAATAAAAACAGAAGTAGCAGT AGTCACAGCTATAGAGCCTTTTTATCTGTTTCTGCTGCCTCAGTCTCACC ACCGGCCTCGACTAGGGAACGGACCTTATTATCCTCATCCTCCCTACCGA CAGCAACTCCCTCCTCCTTCGATTCCTCGTCCTCCTTCTCTCGGTCATTG CCCATACTCCCTCCCTCCCAACGAGGGTCCCTACGCCCTCCTCCTCGCCG GCCGTTGGAGGTGGTGTTGGAGGCTCAAGGAGTGCAAGTCCCTGCTTGGA TTCTGCGAGAGATGCATTCCCATGTGGTCAACGAAAAACAGGAGGTCAAA GAGGTGGAGAGCGTGGCGATGGCGAGAGAAAGCGGCAGAATGACGTCAAC AGCTGAAGTAGTGGAGTCAACAGCTGCTCCTGCTGCTGCTGCGCTTGCTG GTGGGAGGCAAGCGATGGTGGCTTCTTTAGCCACAGAGACAGTAGAGGAA AAGGAGGGAAAGTGGTTGAATGGCGCAGGGAGGGTAACACGTGGGAGGGA GGGAGGAGCGTCTCTAATTAGCAGTAGCAGCCGCTCACCGGGAACAGGCA TGTTGCCTTCCTTCTTTACGCCTTCATTCTCTTCCTCTTTCTCGCCACCC ACAAGCCCCCACGGGTTATCGGCCCATGCGTCACCTTTGGCCTCTTCTTC CTCTTTCAATCGATCGTCCTTCCCAGGGCTTACGGATATCACTACTTATG CTACATCTACTGCTGCTCCTGCTACTGGTACCGATGTGTGTGGGAGTTAT TACAACGCAGGCACACGCCGAGCGCCCCCTAGAAGAGGAAGAGATGAAGA CCGAGAAGGCTCTGGAGAAAGAGGAGGGAGAATGAAAGAAATGGAAATGA GAAAAGAGGAGGGAGATGAAGGCAAGCACAAACACGAGAAGGAAGTCGAC CTCGGCAATGACGACGGTATAGACGGGCAGCAGCAAAAAGAGGACAAGGA CGTGGAAGAGAGGGAAGAGGAGGAGCAGAATGTTTTAAAGGAGGAGGGGG TTGTAGAAGAGAAGGAGGAGGAGGAAGATTTGGGGATTTTGGAGGCGCGA TTGCGGGGGTGGATGATGGAGCGTGAACGATTTGAGCAAGCGCGTGTGGA AGTAGAGGAACTTGAAGCCATTCAACAACAACGACGACACCACCCAGGGC AGCAGAAGAAGGAGCAGGCGTCGACCGAATCCTCTTCTCTTTCGTTATCC ACCTCACAGGCGTCTTCTGCATTGTCGCAAGCAACGCCGTCCAGCCCAAA CAGGAGCAGCAGCAGCAGCACGAGTGTAGGGAGTTTGAGGAGGCGTCAGC AGGAGGAGCGGCTGCAGGAATTGCGAGAAGTCTTGCGAGAGTATGAAGAG TGGCAAGAACGGACATTACCTTTAATTAGGGGGGTGCACAGGAAAATCGG ACAGCTGAAGCTGCGTGTGTCAGGAGCGAGGCTGACGACAACAACGACTG CTTCTATCTGAAAGATGGGATGTAGTAATTCATGACAGGGGCGTGGGTTG GAGGAGGGGAAGGAAAATATATAGCTTGGAGCGGCGTTATATCGCCGAGT AAGAGGACAGTAACAGCACCAGGGGCAAGAGGGGAAGGAGGAGGAGAAGG AAAGGATTTGGAATTGGGACGTGATGATTGTGTAAATGTGATGTTTGTGG AAATGTATGCATCTGGAGAAGCAAACGACTACTTTGCGTATCTATTCTTA TGTAATTGAAGGGTGAAAAGCACGCGAATAAACACTTATGCATGTACCAA ACTTGAATGAAAAGAAAAAGTAAAATAAATGCCCTCTCTTTGAACTGATG TCAGCAAGTTCTACACGCTGTGAGTGGCGGAAATTTTCATCGCCGAGGGG GGAAAACAAATAAATAGCGACTGGCACTTTGGCTCGACTGAGGGTCGTTC CTTGATGATTCGTCAAACATTCTACACGACGAGCTTCTCAGTATTCGAAT ATTGGGCTAAACGCAGCAAGCCGGAGAAAGCAAAGCAGATAAAGCAATAA ACGGGTG back to topprotein sequence of jgi.p|Nanoce1779_2|585676 >mRNA_3869-protein ID=mRNA_3869-protein|Name=jgi.p|Nanoce1779_2|585676|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp MHSHVVNEKQEVKEVESVAMARESGRMTSTAEVVESTAAPAAAALAGGRQ AMVASLATETVEEKEGKWLNGAGRVTRGREGGASLISSSSRSPGTGMLPS FFTPSFSSSFSPPTSPHGLSAHASPLASSSSFNRSSFPGLTDITTYATST AAPATGTDVCGSYYNAGTRRAPPRRGRDEDREGSGERGGRMKEMEMRKEE GDEGKHKHEKEVDLGNDDGIDGQQQKEDKDVEEREEEEQNVLKEEGVVEE KEEEEDLGILEARLRGWMMERERFEQARVEVEELEAIQQQRRHHPGQQKK EQASTESSSLSLSTSQASSALSQATPSSPNRSSSSSTSVGSLRRRQQEER LQELREVLREYEEWQERTLPLIRGVHRKIGQLKLRVSGARLTTTTTASI* back to topmRNA from alignment at scaffold_8:269864..272270- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3869 ID=mRNA_3869|Name=jgi.p|Nanoce1779_2|585676|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp|location=Sequence derived from alignment at scaffold_8:269864..272270- (Nannochloropsis oceanica) AAAATCGCGGAAGAGGAGAGAGAGGGAGGGAGGGAAGGAGGGATTGTGGC
AATGGAAGGGATGGAGGGAAGGGTGGGCATTTAAAAGGTGGCGAATTTGG
GTGCATCGGCATCGGAAGAAGAGGCAACAGCGAGCACTGACAGAAGCAGA
GGAACGTCGGTTGAAGCTCTTGCAGTCTGCTTATCCTACATGGCATATCA
GTGGTGGGAACAGCAACGGCCGGAGCTGCACCGCTTTATTCGAAGGGAGA
AGAGACAGGGGGGAGATAGGGGAGGGAGGAAGGCGTCATTTCCCTACACC
TCGCCCTTGGAATGGTGATGGTGCGGGGTGGAATGCGTATGGGACGGGAG
GGAGGGGCCATCTTGCACTTTCTGGTGGGAATAAAAACAGAAGTAGCAGT
AGTCACAGCTATAGAGCCTTTTTATCTGTTTCTGCTGCCTCAGTCTCACC
ACCGGCCTCGACTAGGGAACGGACCTTATTATCCTCATCCTCCCTACCGA
CAGCAACTCCCTCCTCCTTCGATTCCTCGTCCTCCTTCTCTCGGTCATTG
CCCATACTCCCTCCCTCCCAACGAGGGTCCCTACGCCCTCCTCCTCGCCG
GCCGTTGGAGGTGGTGTTGGAGGCTCAAGGAGTGCAAGTCCCTGCTTGGA
TTCTGCGAGAGATGCATTCCCATGTGGTCAACGAAAAACAGGAGGTCAAA
GAGGTGGAGAGCGTGGCGATGGCGAGAGAAAGCGGCAGAATGACGTCAAC
AGCTGAAGTAGTGGAGTCAACAGCTGCTCCTGCTGCTGCTGCGCTTGCTG
GTGGGAGGCAAGCGATGGTGGCTTCTTTAGCCACAGAGACAGTAGAGGAA
AAGGAGGGAAAGTGGTTGAATGGCGCAGGGAGGGTAACACGTGGGAGGGA
GGGAGGAGCGTCTCTAATTAGCAGTAGCAGCCGCTCACCGGGAACAGGCA
TGTTGCCTTCCTTCTTTACGCCTTCATTCTCTTCCTCTTTCTCGCCACCC
ACAAGCCCCCACGGGTTATCGGCCCATGCGTCACCTTTGGCCTCTTCTTC
CTCTTTCAATCGATCGTCCTTCCCAGGGCTTACGGATATCACTACTTATG
CTACATCTACTGCTGCTCCTGCTACTGGTACCGATGTGTGTGGGAGTTAT
TACAACGCAGGCACACGCCGAGCGCCCCCTAGAAGAGGAAGAGATGAAGA
CCGAGAAGGCTCTGGAGAAAGAGGAGGGAGAATGAAAGAAATGGAAATGA
GAAAAGAGGAGGGAGATGAAGGCAAGCACAAACACGAGAAGGAAGTCGAC
CTCGGCAATGACGACGGTATAGACGGGCAGCAGCAAAAAGAGGACAAGGA
CGTGGAAGAGAGGGAAGAGGAGGAGCAGAATGTTTTAAAGGAGGAGGGGG
TTGTAGAAGAGAAGGAGGAGGAGGAAGATTTGGGGATTTTGGAGGCGCGA
TTGCGGGGGTGGATGATGGAGCGTGAACGATTTGAGCAAGCGCGTGTGGA
AGTAGAGGAACTTGAAGCCATTCAACAACAACGACGACACCACCCAGGGC
AGCAGAAGAAGGAGCAGGCGTCGACCGAATCCTCTTCTCTTTCGTTATCC
ACCTCACAGGCGTCTTCTGCATTGTCGCAAGCAACGCCGTCCAGCCCAAA
CAGGAGCAGCAGCAGCAGCACGAGTGTAGGGAGTTTGAGGAGGCGTCAGC
AGGAGGAGCGGCTGCAGGAATTGCGAGAAGTCTTGCGAGAGTATGAAGAG
TGGCAAGAACGGACATTACCTTTAATTAGGGGGGTGCACAGGAAAATCGG
ACAGCTGAAGCTGCGTGTGTCAGGAGCGAGGCTGACGACAACAACGACTG
CTTCTATCTGAAAGATGGGATGTAGTAATTCATGACAGGGGCGTGGGTTG
GAGGAGGGGAAGGAAAATATATAGCTTGGAGCGGCGTTATATCGCCGAGT
AAGAGGACAGTAACAGCACCAGGGGCAAGAGGGGAAGGAGGAGGAGAAGG
AAAGGATTTGGAATTGGGACGTGATGATTGTGTAAATGTGATGTTTGTGG
AAATGTATGCATCTGGAGAAGCAAACGACTACTTTGCGTATCTATTCTTA
TGTAATTGAAGGGTGAAAAGCACGCGAATAAACACTTATGCATGTACCAA
ACTTGAATGAAAAGAAAAAGTAAAATAAATGCCCTCTCTTTGAACTGATG
TCAGCAAGTTCTACACGCTGTGAGTGGCGGAAATTTTCATCGCCGAGGGG
GGAAAACAAATAAATAGCGACTGGCACTTTGGCTCGACTGAGGGTCGTTC
CTTGATGATTCGTCAAACATTCTACACGACGAGCTTCTCAGTATTCGAAT
ATTGGGCTAAACGCAGCAAGCCGGAGAAAGCAAAGCAGATAAAGCAATAA
ACGGGTG back to topCoding sequence (CDS) from alignment at scaffold_8:269864..272270- >mRNA_3869 ID=mRNA_3869|Name=jgi.p|Nanoce1779_2|585676|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_8:269864..272270- (Nannochloropsis oceanica) ATGCATTCCCATGTGGTCAACGAAAAACAGGAGGTCAAAGAGGTGGAGAG CGTGGCGATGGCGAGAGAAAGCGGCAGAATGACGTCAACAGCTGAAGTAG TGGAGTCAACAGCTGCTCCTGCTGCTGCTGCGCTTGCTGGTGGGAGGCAA GCGATGGTGGCTTCTTTAGCCACAGAGACAGTAGAGGAAAAGGAGGGAAA GTGGTTGAATGGCGCAGGGAGGGTAACACGTGGGAGGGAGGGAGGAGCGT CTCTAATTAGCAGTAGCAGCCGCTCACCGGGAACAGGCATGTTGCCTTCC TTCTTTACGCCTTCATTCTCTTCCTCTTTCTCGCCACCCACAAGCCCCCA CGGGTTATCGGCCCATGCGTCACCTTTGGCCTCTTCTTCCTCTTTCAATC GATCGTCCTTCCCAGGGCTTACGGATATCACTACTTATGCTACATCTACT GCTGCTCCTGCTACTGGTACCGATGTGTGTGGGAGTTATTACAACGCAGG CACACGCCGAGCGCCCCCTAGAAGAGGAAGAGATGAAGACCGAGAAGGCT CTGGAGAAAGAGGAGGGAGAATGAAAGAAATGGAAATGAGAAAAGAGGAG GGAGATGAAGGCAAGCACAAACACGAGAAGGAAGTCGACCTCGGCAATGA CGACGGTATAGACGGGCAGCAGCAAAAAGAGGACAAGGACGTGGAAGAGA GGGAAGAGGAGGAGCAGAATGTTTTAAAGGAGGAGGGGGTTGTAGAAGAG AAGGAGGAGGAGGAAGATTTGGGGATTTTGGAGGCGCGATTGCGGGGGTG GATGATGGAGCGTGAACGATTTGAGCAAGCGCGTGTGGAAGTAGAGGAAC TTGAAGCCATTCAACAACAACGACGACACCACCCAGGGCAGCAGAAGAAG GAGCAGGCGTCGACCGAATCCTCTTCTCTTTCGTTATCCACCTCACAGGC GTCTTCTGCATTGTCGCAAGCAACGCCGTCCAGCCCAAACAGGAGCAGCA GCAGCAGCACGAGTGTAGGGAGTTTGAGGAGGCGTCAGCAGGAGGAGCGG CTGCAGGAATTGCGAGAAGTCTTGCGAGAGTATGAAGAGTGGCAAGAACG GACATTACCTTTAATTAGGGGGGTGCACAGGAAAATCGGACAGCTGAAGC TGCGTGTGTCAGGAGCGAGGCTGACGACAACAACGACTGCTTCTATCTGA back to top
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