jgi.p|Nanoce1779_2|585806, mRNA_3909 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585806
Unique Name	mRNA_3909
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1619
Alignment location	scaffold_8:374793..376411 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585892
Track	FilteredModels2
ProteinId	585806

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:374793..376411 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585806	gene_3909	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585806	mRNA_3909-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3909	CDS_3909	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:374793..376411+
coding sequence from alignment at scaffold_8:374793..376411+

mRNA sequence

>mRNA_3909 ID=mRNA_3909|Name=jgi.p|Nanoce1779_2|585806|organism=Nannochloropsis oceanica|type=mRNA|length=1619bp
CAGATATAATCACACCGCGGCGTGGAATTAAACGTGACGACGAGGAGTAG
CAACCAAGAAGAGCAACGAGGGATCGCACAACGAGGACGAGGACGATGAG
TCTGTCCCGCACTGCACTCCTCGCCTTGTCCTGTGCCTTTTTGGTCGCAG
TCTGTGCGGATGTCGCGAATATGCAGTCAAACGTGCAAATTCATGGCTCG
AGGACAGTATCAGCGAAAAGGAATAGATATCGTTACTATGGGGCTAGGAG
CCTGCGCGCAACAGCGGAAGACAGGGTGAAAGGAGAAAAGGAGGGAAAGA
TTGCAGGGCCAGGTGTCATGACCAAGGCAACTATGGCGGACGGACATCAC
GATATATCGGTATTAGCAGGAGCACGACCAGTGGGAATAGCAACAGGCGA
TAAGGGTGCTGCTGGTTTGGGCCCTGCTCACGCAGTCGCCCAGGCCAAAC
GCAATGGCAGACAGGCGAAAAAAGACAAGCTCAAAACGGAGCGTCACGTC
AAAAAGGGGCTGAAGAAAGGAGTGCATAAAGTTGAAAAAATGGGGAAGCA
TGCGGGCAGAAAATTCAAACGGGTGGGCAGAAAGTGGAAGCATGGCAAGA
AGAAAATGTTGAAGAAACAGGGCATCCCTCTTCTAGCCGGGGCCGGGGCC
GGGGCCGCCGCCGCCGCCGCCGCCGCAGCTGCAGCAGGAAGTGGAGGAGG
AACAGGAATAAGAAAATTATTCCGTGGGAACACGGGATTTGAGGAAGGTT
TCAAGGCCAGCAGTATCACGACCGAAGGAAATTGGGGAGACGAGGGTCTA
CTCCATCGACCCGGCCAAGCAAAGCCGCACATGACCATCGCTGGTGCTTT
TGCCCGTCTCGCCGAAGACAAACTCAACAACCTCGCGGATGTCTCACCTT
TCCCTTTAACGGATGACGCGCCTCCCCGTCGTCAGACCAAAAAATTTAAG
GTTGTCGTTCCTGCCTTCTACCATGGGAAGGAGTTCCACCCCCCCACCGA
ACCGATTCCGCTTGTTATGGGCGAGCACCACTTTATTCATCCCGAGATGG
CTGCGTCTTTAAATCTTGTCCCGACGAATTAAGAGGGTACACTGTAGGAT
CAAGGTTGTTGCCCGGGACATCGACTTAGGTTGGAGGAGAAGTAGAAGCA
ACAGCTCATGGAAGGCACGGCGTTGACGGGACGAAATAAAAAAAAGGAGA
GAGCAACAGGGGCTATGTGTCTGTCTGTTGGTGGCGCGGGTTTGGTCACG
AAGGAGATGTACAGACAGTTCGAAGACATGCTCTTCAACAGTAAAACTCA
TCGCAAAGTTTTGAAGATAACTGAGCTCATTCACAAAGGTAAGAACCAGC
CGGCCACGTCCCTCCACCGAATTTATAAGCAGTCAAGCCGGATCAATGTC
TTTTTGCGCCCAAGAAGCAGCACATTTCTTCATGGATGATTAGGCGTTCA
AGAAATTGTTGGATGGGTGGGTTGTGGAGCGGGAGTTTGGACGTCAGGGA
GGGTTGAGGAAATACATAAAATGAAAGGCAGGAGTATGATAGAGCGAAGG
CCCCAAAGACTCAAGGTGGGAAGAGAAAAAAATAATACCTAAAAATTTAA
TTTGAGAGAGTACGCGTGC

protein sequence of jgi.p|Nanoce1779_2|585806

>mRNA_3909-protein ID=mRNA_3909-protein|Name=jgi.p|Nanoce1779_2|585806|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MSLSRTALLALSCAFLVAVCADVANMQSNVQIHGSRTVSAKRNRYRYYGA
RSLRATAEDRVKGEKEGKIAGPGVMTKATMADGHHDISVLAGARPVGIAT
GDKGAAGLGPAHAVAQAKRNGRQAKKDKLKTERHVKKGLKKGVHKVEKMG
KHAGRKFKRVGRKWKHGKKKMLKKQGIPLLAGAGAGAAAAAAAAAAAGSG
GGTGIRKLFRGNTGFEEGFKASSITTEGNWGDEGLLHRPGQAKPHMTIAG
AFARLAEDKLNNLADVSPFPLTDDAPPRRQTKKFKVVVPAFYHGKEFHPP
TEPIPLVMGEHHFIHPEMAASLNLVPTN*

mRNA from alignment at scaffold_8:374793..376411+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3909 ID=mRNA_3909|Name=jgi.p|Nanoce1779_2|585806|organism=Nannochloropsis oceanica|type=mRNA|length=1619bp|location=Sequence derived from alignment at scaffold_8:374793..376411+ (Nannochloropsis oceanica)
CAGATATAATCACACCGCGGCGTGGAATTAAACGTGACGACGAGGAGTAG
CAACCAAGAAGAGCAACGAGGGATCGCACAACGAGGACGAGGACGATGAG
TCTGTCCCGCACTGCACTCCTCGCCTTGTCCTGTGCCTTTTTGGTCGCAG
TCTGTGCGGATGTCGCGAATATGCAGTCAAACGTGCAAATTCATGGCTCG
AGGACAGTATCAGCGAAAAGGAATAGATATCGTTACTATGGGGCTAGGAG
CCTGCGCGCAACAGCGGAAGACAGGGTGAAAGGAGAAAAGGAGGGAAAGA
TTGCAGGGCCAGGTGTCATGACCAAGGCAACTATGGCGGACGGACATCAC
GATATATCGGTATTAGCAGGAGCACGACCAGTGGGAATAGCAACAGGCGA
TAAGGGTGCTGCTGGTTTGGGCCCTGCTCACGCAGTCGCCCAGGCCAAAC
GCAATGGCAGACAGGCGAAAAAAGACAAGCTCAAAACGGAGCGTCACGTC
AAAAAGGGGCTGAAGAAAGGAGTGCATAAAGTTGAAAAAATGGGGAAGCA
TGCGGGCAGAAAATTCAAACGGGTGGGCAGAAAGTGGAAGCATGGCAAGA
AGAAAATGTTGAAGAAACAGGGCATCCCTCTTCTAGCCGGGGCCGGGGCC
GGGGCCGCCGCCGCCGCCGCCGCCGCAGCTGCAGCAGGAAGTGGAGGAGG
AACAGGAATAAGAAAATTATTCCGTGGGAACACGGGATTTGAGGAAGGTT
TCAAGGCCAGCAGTATCACGACCGAAGGAAATTGGGGAGACGAGGGTCTA
CTCCATCGACCCGGCCAAGCAAAGCCGCACATGACCATCGCTGGTGCTTT
TGCCCGTCTCGCCGAAGACAAACTCAACAACCTCGCGGATGTCTCACCTT
TCCCTTTAACGGATGACGCGCCTCCCCGTCGTCAGACCAAAAAATTTAAG
GTTGTCGTTCCTGCCTTCTACCATGGGAAGGAGTTCCACCCCCCCACCGA
ACCGATTCCGCTTGTTATGGGCGAGCACCACTTTATTCATCCCGAGATGG
CTGCGTCTTTAAATCTTGTCCCGACGAATTAAGAGGGTACACTGTAGGAT
CAAGGTTGTTGCCCGGGACATCGACTTAGGTTGGAGGAGAAGTAGAAGCA
ACAGCTCATGGAAGGCACGGCGTTGACGGGACGAAATAAAAAAAAGGAGA
GAGCAACAGGGGCTATGTGTCTGTCTGTTGGTGGCGCGGGTTTGGTCACG
AAGGAGATGTACAGACAGTTCGAAGACATGCTCTTCAACAGTAAAACTCA
TCGCAAAGTTTTGAAGATAACTGAGCTCATTCACAAAGGTAAGAACCAGC
CGGCCACGTCCCTCCACCGAATTTATAAGCAGTCAAGCCGGATCAATGTC
TTTTTGCGCCCAAGAAGCAGCACATTTCTTCATGGATGATTAGGCGTTCA
AGAAATTGTTGGATGGGTGGGTTGTGGAGCGGGAGTTTGGACGTCAGGGA
GGGTTGAGGAAATACATAAAATGAAAGGCAGGAGTATGATAGAGCGAAGG
CCCCAAAGACTCAAGGTGGGAAGAGAAAAAAATAATACCTAAAAATTTAA
TTTGAGAGAGTACGCGTGC

Coding sequence (CDS) from alignment at scaffold_8:374793..376411+

>mRNA_3909 ID=mRNA_3909|Name=jgi.p|Nanoce1779_2|585806|organism=Nannochloropsis oceanica|type=CDS|length=987bp|location=Sequence derived from alignment at scaffold_8:374793..376411+ (Nannochloropsis oceanica)
ATGAGTCTGTCCCGCACTGCACTCCTCGCCTTGTCCTGTGCCTTTTTGGT
CGCAGTCTGTGCGGATGTCGCGAATATGCAGTCAAACGTGCAAATTCATG
GCTCGAGGACAGTATCAGCGAAAAGGAATAGATATCGTTACTATGGGGCT
AGGAGCCTGCGCGCAACAGCGGAAGACAGGGTGAAAGGAGAAAAGGAGGG
AAAGATTGCAGGGCCAGGTGTCATGACCAAGGCAACTATGGCGGACGGAC
ATCACGATATATCGGTATTAGCAGGAGCACGACCAGTGGGAATAGCAACA
GGCGATAAGGGTGCTGCTGGTTTGGGCCCTGCTCACGCAGTCGCCCAGGC
CAAACGCAATGGCAGACAGGCGAAAAAAGACAAGCTCAAAACGGAGCGTC
ACGTCAAAAAGGGGCTGAAGAAAGGAGTGCATAAAGTTGAAAAAATGGGG
AAGCATGCGGGCAGAAAATTCAAACGGGTGGGCAGAAAGTGGAAGCATGG
CAAGAAGAAAATGTTGAAGAAACAGGGCATCCCTCTTCTAGCCGGGGCCG
GGGCCGGGGCCGCCGCCGCCGCCGCCGCCGCAGCTGCAGCAGGAAGTGGA
GGAGGAACAGGAATAAGAAAATTATTCCGTGGGAACACGGGATTTGAGGA
AGGTTTCAAGGCCAGCAGTATCACGACCGAAGGAAATTGGGGAGACGAGG
GTCTACTCCATCGACCCGGCCAAGCAAAGCCGCACATGACCATCGCTGGT
GCTTTTGCCCGTCTCGCCGAAGACAAACTCAACAACCTCGCGGATGTCTC
ACCTTTCCCTTTAACGGATGACGCGCCTCCCCGTCGTCAGACCAAAAAAT
TTAAGGTTGTCGTTCCTGCCTTCTACCATGGGAAGGAGTTCCACCCCCCC
ACCGAACCGATTCCGCTTGTTATGGGCGAGCACCACTTTATTCATCCCGA
GATGGCTGCGTCTTTAAATCTTGTCCCGACGAATTAA

Synonyms

Publications