jgi.p|Nanoce1779_2|443458, mRNA_4800 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|443458
Unique Name	mRNA_4800
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2080
Alignment location	scaffold_9:652917..654996 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	443544
Track	FilteredModels2
ProteinId	443458

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:652917..654996 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|443458	gene_4800	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|443458	mRNA_4800-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4800	CDS_4800	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:652917..654996+
coding sequence from alignment at scaffold_9:652917..654996+

mRNA sequence

>mRNA_4800 ID=mRNA_4800|Name=jgi.p|Nanoce1779_2|443458|organism=Nannochloropsis oceanica|type=mRNA|length=2080bp
TGGGGGAGAGGGGGGAGAGGGCAGCAAGGGGAAGCAAACAAAACAGTGGC
TAGTTCAGGGACGCAAAATGAGCGTTTTATTCATATTGAAGTCTCGCCTG
GCTCTCTCATCATGATTGCCGCTCTTGTTACAAGTAAATCTCTTAAGGGA
ATGTTACCCTCCCCTTTTGGACGACTGGCGCACTCTTTCCGTCTTCCCCT
TCACTTCCGCCGAACACCTTCACTTAGAGCGTTCCTCCACATCCAAACTC
CACAGATGTTGAACAAGGGGCAAGACGCTGGCACTCCACCCCCTGCCCAC
CCCAAGGCAAAGAGCAAGAAAGAGGATGAGCATGAAGAGGAGGACATCGG
CAACGGTAGCGACGCAAGCAGTGGCAGCAGCACCTCGAACAGCAGCAACA
GCAGTGGTAGCAGTAGTGGCCCATCCTCATCCTCCTCTACATTTTCCACA
TCCTTGGCGTCGCGATCGCCGCCCCGCTCCGCCAAGATGGGGAAGCACCG
AAAGCGGAAGAGAAAGGAAAAGGAAAAGGGGGAGGAGGAGGAGGAAGAGG
AGGAGGAGGAGGAGGAGAGGCTCAACGGACTTAATCGCCTTGATAGCCAT
GGGGTCAGCCGCAGCCGCAGGAGGAGTCCTGTAAGAGAGATGGGAGAATC
CCGGAAGGACAAGAAGAAGGGGAATAGGAGGGAGGAGGAGGTGGATGAGG
AGGAGGATTGGAAGAAGGCAATCACTGCTGGGAAGAAGCGTAGCCGAAGC
CCGAATAGGGATGGAAGGAAGAAGATGAAGAAAGGGGAAGCTCGTGAAAA
GGACTGGGATATTATGAAGAGTGAGAAACGGCGGCGGGAGGAACGGGAGA
ACAGGCGTCGCAGCCGAAGTCGAAGTCGAAGTAAGGAGCGGGAGGAGCGA
CGAGGACGTGAAGGAGGGCGGGAGGGAGGACGTTCTGACCGTGATCGGCG
TTTAAGGGGCGAACACCGTTCGGAGGATAGGAGGGATCACCACAGGGATC
AGAATGATCAGCACGGAGGAGGAGGAGGAGGTGGAAGGTGGGGATGCCGC
CCTGGTCGCGACCGTTTCGGCCACCCTTCTCGATATGGTGGGTGCGATGG
CCGAGGGGGTGATGAAGGAGGAGATAGGGGGGAAGGAAGTGGGGGAGGGG
GGAGGCACGAGCAGTACGGTGTGGATGGCGGCGGCTTTGGGGGTGGGGGT
GGTGGTAGCGGACGTGGGCGTGATGAGAGATGGCACCAGCAATATGCACG
TCGTCATCTTCCGCCTTCCTCCCCCCCCATGCCTCCTCCTTCCCCACCAA
AATCAAAGCGCTCGGGCATTTTTCAATACCTTGCCGATGTCCCTGGAGTG
ACCCTTCCTCCCTCCCTCCGTCCCTCCCTCCCTCCCTCTGCTGCATCAGC
TGCGCCGTCCGTCAATGGAGGTAGAGAAGGAGGAGGCGTTGCTGCGTATT
CTAACACCTTCGGCGTGCGGGATAATCACCGAGGAGGAGGAGGAGGCGGA
AGAAGAGGAGGAGGAGGAGGAGGAAAAGAGGGAGGAAGATATTGGGGATG
CGCACGAGAAGGCGGCAGACATCGGGAAATGGAGAAAGAGGTGGACGGAG
AAAGGGGAAGAGGAAGAGAAGGCGACCGGGGCCGAGGAAGAGAAGGAGGG
CGGGAGGGAGGGAGGAGGTTACAAGGAGGGGAGGTGGTGCGGGACGGCTA
TTCCAAGGGCATTCATGTCGACGAAGCGCCAGAAAGGGCAAGGCCGTATG
CCTGTGACGTGAGTGGGTGTGAGGTATCTTTTGCGATTGCCCCTGACTTG
TGCGATCATTTGATGAGGGCGCACGGAACGAAGAGACACCCTAGTCAGAT
CGTGGCCAGACAGGTCATTTTTTAGACCTCGTGCCCTCTCGCCCTCCCTC
CCTCCCTGCCTGCCTGCCTGCCTGCTTCGTATGCCATGCTGCAGAGACCT
GGATGTCATGGAAAAAGCGGTGCGGGAAAGCGTAGGCCAACGCATGGGCG
AAGGTAGGATGTATGGGAGGGAGAGTATCGCGGGAGGTATGACGAGAAAG
GAAAGTCGGGAGACTCAATCGAAAAAAAAA

protein sequence of jgi.p|Nanoce1779_2|443458

>mRNA_4800-protein ID=mRNA_4800-protein|Name=jgi.p|Nanoce1779_2|443458|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MIAALVTSKSLKGMLPSPFGRLAHSFRLPLHFRRTPSLRAFLHIQTPQML
NKGQDAGTPPPAHPKAKSKKEDEHEEEDIGNGSDASSGSSTSNSSNSSGS
SSGPSSSSSTFSTSLASRSPPRSAKMGKHRKRKRKEKEKGEEEEEEEEEE
EERLNGLNRLDSHGVSRSRRRSPVREMGESRKDKKKGNRREEEVDEEEDW
KKAITAGKKRSRSPNRDGRKKMKKGEAREKDWDIMKSEKRRREERENRRR
SRSRSRSKEREERRGREGGREGGRSDRDRRLRGEHRSEDRRDHHRDQNDQ
HGGGGGGGRWGCRPGRDRFGHPSRYGGCDGRGGDEGGDRGEGSGGGGRHE
QYGVDGGGFGGGGGGSGRGRDERWHQQYARRHLPPSSPPMPPPSPPKSKR
SGIFQYLADVPGVTLPPSLRPSLPPSAASAAPSVNGGREGGGVAAYSNTF
GVRDNHRGGGGGGRRGGGGGGKEGGRYWGCAREGGRHREMEKEVDGERGR
GREGDRGRGREGGREGGRRLQGGEVVRDGYSKGIHVDEAPERARPYACDV
SGCEVSFAIAPDLCDHLMRAHGTKRHPSQIVARQVIF*

mRNA from alignment at scaffold_9:652917..654996+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4800 ID=mRNA_4800|Name=jgi.p|Nanoce1779_2|443458|organism=Nannochloropsis oceanica|type=mRNA|length=2080bp|location=Sequence derived from alignment at scaffold_9:652917..654996+ (Nannochloropsis oceanica)
TGGGGGAGAGGGGGGAGAGGGCAGCAAGGGGAAGCAAACAAAACAGTGGC
TAGTTCAGGGACGCAAAATGAGCGTTTTATTCATATTGAAGTCTCGCCTG
GCTCTCTCATCATGATTGCCGCTCTTGTTACAAGTAAATCTCTTAAGGGA
ATGTTACCCTCCCCTTTTGGACGACTGGCGCACTCTTTCCGTCTTCCCCT
TCACTTCCGCCGAACACCTTCACTTAGAGCGTTCCTCCACATCCAAACTC
CACAGATGTTGAACAAGGGGCAAGACGCTGGCACTCCACCCCCTGCCCAC
CCCAAGGCAAAGAGCAAGAAAGAGGATGAGCATGAAGAGGAGGACATCGG
CAACGGTAGCGACGCAAGCAGTGGCAGCAGCACCTCGAACAGCAGCAACA
GCAGTGGTAGCAGTAGTGGCCCATCCTCATCCTCCTCTACATTTTCCACA
TCCTTGGCGTCGCGATCGCCGCCCCGCTCCGCCAAGATGGGGAAGCACCG
AAAGCGGAAGAGAAAGGAAAAGGAAAAGGGGGAGGAGGAGGAGGAAGAGG
AGGAGGAGGAGGAGGAGAGGCTCAACGGACTTAATCGCCTTGATAGCCAT
GGGGTCAGCCGCAGCCGCAGGAGGAGTCCTGTAAGAGAGATGGGAGAATC
CCGGAAGGACAAGAAGAAGGGGAATAGGAGGGAGGAGGAGGTGGATGAGG
AGGAGGATTGGAAGAAGGCAATCACTGCTGGGAAGAAGCGTAGCCGAAGC
CCGAATAGGGATGGAAGGAAGAAGATGAAGAAAGGGGAAGCTCGTGAAAA
GGACTGGGATATTATGAAGAGTGAGAAACGGCGGCGGGAGGAACGGGAGA
ACAGGCGTCGCAGCCGAAGTCGAAGTCGAAGTAAGGAGCGGGAGGAGCGA
CGAGGACGTGAAGGAGGGCGGGAGGGAGGACGTTCTGACCGTGATCGGCG
TTTAAGGGGCGAACACCGTTCGGAGGATAGGAGGGATCACCACAGGGATC
AGAATGATCAGCACGGAGGAGGAGGAGGAGGTGGAAGGTGGGGATGCCGC
CCTGGTCGCGACCGTTTCGGCCACCCTTCTCGATATGGTGGGTGCGATGG
CCGAGGGGGTGATGAAGGAGGAGATAGGGGGGAAGGAAGTGGGGGAGGGG
GGAGGCACGAGCAGTACGGTGTGGATGGCGGCGGCTTTGGGGGTGGGGGT
GGTGGTAGCGGACGTGGGCGTGATGAGAGATGGCACCAGCAATATGCACG
TCGTCATCTTCCGCCTTCCTCCCCCCCCATGCCTCCTCCTTCCCCACCAA
AATCAAAGCGCTCGGGCATTTTTCAATACCTTGCCGATGTCCCTGGAGTG
ACCCTTCCTCCCTCCCTCCGTCCCTCCCTCCCTCCCTCTGCTGCATCAGC
TGCGCCGTCCGTCAATGGAGGTAGAGAAGGAGGAGGCGTTGCTGCGTATT
CTAACACCTTCGGCGTGCGGGATAATCACCGAGGAGGAGGAGGAGGCGGA
AGAAGAGGAGGAGGAGGAGGAGGAAAAGAGGGAGGAAGATATTGGGGATG
CGCACGAGAAGGCGGCAGACATCGGGAAATGGAGAAAGAGGTGGACGGAG
AAAGGGGAAGAGGAAGAGAAGGCGACCGGGGCCGAGGAAGAGAAGGAGGG
CGGGAGGGAGGGAGGAGGTTACAAGGAGGGGAGGTGGTGCGGGACGGCTA
TTCCAAGGGCATTCATGTCGACGAAGCGCCAGAAAGGGCAAGGCCGTATG
CCTGTGACGTGAGTGGGTGTGAGGTATCTTTTGCGATTGCCCCTGACTTG
TGCGATCATTTGATGAGGGCGCACGGAACGAAGAGACACCCTAGTCAGAT
CGTGGCCAGACAGGTCATTTTTTAGACCTCGTGCCCTCTCGCCCTCCCTC
CCTCCCTGCCTGCCTGCCTGCCTGCTTCGTATGCCATGCTGCAGAGACCT
GGATGTCATGGAAAAAGCGGTGCGGGAAAGCGTAGGCCAACGCATGGGCG
AAGGTAGGATGTATGGGAGGGAGAGTATCGCGGGAGGTATGACGAGAAAG
GAAAGTCGGGAGACTCAATCGAAAAAAAAA

Coding sequence (CDS) from alignment at scaffold_9:652917..654996+

>mRNA_4800 ID=mRNA_4800|Name=jgi.p|Nanoce1779_2|443458|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_9:652917..654996+ (Nannochloropsis oceanica)
ATGATTGCCGCTCTTGTTACAAGTAAATCTCTTAAGGGAATGTTACCCTC
CCCTTTTGGACGACTGGCGCACTCTTTCCGTCTTCCCCTTCACTTCCGCC
GAACACCTTCACTTAGAGCGTTCCTCCACATCCAAACTCCACAGATGTTG
AACAAGGGGCAAGACGCTGGCACTCCACCCCCTGCCCACCCCAAGGCAAA
GAGCAAGAAAGAGGATGAGCATGAAGAGGAGGACATCGGCAACGGTAGCG
ACGCAAGCAGTGGCAGCAGCACCTCGAACAGCAGCAACAGCAGTGGTAGC
AGTAGTGGCCCATCCTCATCCTCCTCTACATTTTCCACATCCTTGGCGTC
GCGATCGCCGCCCCGCTCCGCCAAGATGGGGAAGCACCGAAAGCGGAAGA
GAAAGGAAAAGGAAAAGGGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAG
GAGGAGAGGCTCAACGGACTTAATCGCCTTGATAGCCATGGGGTCAGCCG
CAGCCGCAGGAGGAGTCCTGTAAGAGAGATGGGAGAATCCCGGAAGGACA
AGAAGAAGGGGAATAGGAGGGAGGAGGAGGTGGATGAGGAGGAGGATTGG
AAGAAGGCAATCACTGCTGGGAAGAAGCGTAGCCGAAGCCCGAATAGGGA
TGGAAGGAAGAAGATGAAGAAAGGGGAAGCTCGTGAAAAGGACTGGGATA
TTATGAAGAGTGAGAAACGGCGGCGGGAGGAACGGGAGAACAGGCGTCGC
AGCCGAAGTCGAAGTCGAAGTAAGGAGCGGGAGGAGCGACGAGGACGTGA
AGGAGGGCGGGAGGGAGGACGTTCTGACCGTGATCGGCGTTTAAGGGGCG
AACACCGTTCGGAGGATAGGAGGGATCACCACAGGGATCAGAATGATCAG
CACGGAGGAGGAGGAGGAGGTGGAAGGTGGGGATGCCGCCCTGGTCGCGA
CCGTTTCGGCCACCCTTCTCGATATGGTGGGTGCGATGGCCGAGGGGGTG
ATGAAGGAGGAGATAGGGGGGAAGGAAGTGGGGGAGGGGGGAGGCACGAG
CAGTACGGTGTGGATGGCGGCGGCTTTGGGGGTGGGGGTGGTGGTAGCGG
ACGTGGGCGTGATGAGAGATGGCACCAGCAATATGCACGTCGTCATCTTC
CGCCTTCCTCCCCCCCCATGCCTCCTCCTTCCCCACCAAAATCAAAGCGC
TCGGGCATTTTTCAATACCTTGCCGATGTCCCTGGAGTGACCCTTCCTCC
CTCCCTCCGTCCCTCCCTCCCTCCCTCTGCTGCATCAGCTGCGCCGTCCG
TCAATGGAGGTAGAGAAGGAGGAGGCGTTGCTGCGTATTCTAACACCTTC
GGCGTGCGGGATAATCACCGAGGAGGAGGAGGAGGCGGAAGAAGAGGAGG
AGGAGGAGGAGGAAAAGAGGGAGGAAGATATTGGGGATGCGCACGAGAAG
GCGGCAGACATCGGGAAATGGAGAAAGAGGTGGACGGAGAAAGGGGAAGA
GGAAGAGAAGGCGACCGGGGCCGAGGAAGAGAAGGAGGGCGGGAGGGAGG
GAGGAGGTTACAAGGAGGGGAGGTGGTGCGGGACGGCTATTCCAAGGGCA
TTCATGTCGACGAAGCGCCAGAAAGGGCAAGGCCGTATGCCTGTGACGTG
AGTGGGTGTGAGGTATCTTTTGCGATTGCCCCTGACTTGTGCGATCATTT
GATGAGGGCGCACGGAACGAAGAGACACCCTAGTCAGATCGTGGCCAGAC
AGGTCATTTTTTAG

Synonyms

Publications