jgi.p|Nanoce1779_2|587894, mRNA_4783 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587894
Unique NamemRNA_4783
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1324
Alignment locationscaffold_9:619507..621151 -

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Properties
Property NameValue
TranscriptId587980
TrackFilteredModels2
ProteinId587894
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:619507..621151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587894gene_4783Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587894mRNA_4783-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4783CDS_4783Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4783 ID=mRNA_4783|Name=jgi.p|Nanoce1779_2|587894|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp
TGGCCGCCACTACGGGATGGGATGACGTCCATGTCATCCACCGACATAGT
CATTCGGGAAACACGACGGTGTAACACTTCCAACGGCCCCAACGGCGCGC
GGTTCGATGCCAGAGAGGCAAGACAATCTAACAAGTCCTCGTAACCCTTC
GCCCCACTTCTTCTACTCCTACTGCTTGTAGTGCTGCCGCCCTGGCTCAT
GTCCTGTGGATCTGTGTTGTTGGCGATAGTGCTACTATTGTTGCTAATGC
TGTTGCTGCTGCCGCCGTTGTTGTTGCTGGTGCTGCTGCTGTTGCAACTG
CTTCGGGTGTCAGCAAAAGTGCTCGTGAGCTTCTGCATGTCAGGTAAGAC
CTTAGACAAAATACTCGCAGCCTCCGCGTCCTCCGAATCCATCTCTACAG
ATACGTCACGCTTGACCTCTCCCGCGGCCGGGACGACAAGCCCTGCAGGA
AGGGTGACCTGACGGAGGGCGGGAAGGGCAGCAGCCGAGGGAATGGCAGC
AGCGACTAGTGTGTCGTCGTGTTCTGAAGAGGCTCCCTCCTCCTCGTCAT
TGTTAAGGTGGGGGCCAGGGCTGTTACCGACACTTCCAACACTACTGGCC
ACGGAGCTGCCGGCGGTGGTGGCATTGCTGGAGGTCTCACTGATAGACGC
CCATTCCGATCCGGTCTTAAGTTCCCAGGGCGTGGCCGCAGCCGGGACGG
GGTCTGTCGTGACACCACCTGCCTTAGTCGCCGTCGATGTTGCAGCAGGG
TGCGTGGCTTTGTTGACCGCGGCGGGAGCACCAGTTATCACATCCGCCGT
GGGAGCGGCCGGTGCAGGGGTAGCCATGATCATTGTTCTTCTGAAGTGGG
GTGTTTTTAGGTTCGACCCGTCTGGGTGCGGCTGTGCGGTCACACAAGCA
GCGGGTTTTACCAACCGCAGAAGCTTTGCCTTAGTTGATGCTGTGATTTG
TAGGAGCCACCCGCGTGGGAAAGGGGGAAGTGAGGTACAGACGAACCAGC
AGTCATTGGGAAACTATATAGAGAGGCACAAGCCAGGGTGTAGTGGTGGT
GGGATTGTGACAAGCGCAAATAGACGCCGAAGGCAAATGTAGGGACGTCT
TCCCGCGCGAGACTTCACTTGGCATGCGAGCCGATTCGAGCGGTCAGAGC
ATGTGCCGTGTTAACCGGTCGACCACCAACCACCTACAACCACCGACCAA
CGACAACCACATCCACGCATCTTACTTGGCTACTAGGACATGGTGCGGGC
AATTTCTAGAACACATGAGAATCGGAATATTTGTTAGACAGCTCGCCCGA
GCGATGGTGGTGCAACCCCCACTC
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protein sequence of jgi.p|Nanoce1779_2|587894

>mRNA_4783-protein ID=mRNA_4783-protein|Name=jgi.p|Nanoce1779_2|587894|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MAAATSVSSCSEEAPSSSSLLRWGPGLLPTLPTLLATELPAVVALLEVSL
IDAHSDPVLSSQGVAAAGTGSVVTPPALVAVDVAAGCVALLTAAGAPVIT
SAVGAAGAGVAMIIVLLKWGVFRFDPSGCGCAVTQAAGFTNRRSFALVDA
VICRSHPRGKGGSEVQTNQQSLGNYIERHKPGCSGGGIVTSANRRRRQM*
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mRNA from alignment at scaffold_9:619507..621151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4783 ID=mRNA_4783|Name=jgi.p|Nanoce1779_2|587894|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp|location=Sequence derived from alignment at scaffold_9:619507..621151- (Nannochloropsis oceanica)
TGGCCGCCACTACGGGATGGGATGACGTCCATGTCATCCACCGACATAGT
CATTCGGGAAACACGACGGTGTAACACTTCCAACGGCCCCAACGGCGCGC
GGTTCGATGCCAGAGAGGCAAGACAATCTAACAAGTCCTCGTAACCCTTC
GCCCCACTTCTTCTACTCCTACTGCTTGTAGTGCTGCCGCCCTGGCTCAT
GTCCTGTGGATCTGTGTTGTTGGCGATAGTGCTACTATTGTTGCTAATGC
TGTTGCTGCTGCCGCCGTTGTTGTTGCTGGTGCTGCTGCTGTTGCAACTG
CTTCGGGTGTCAGCAAAAGTGCTCGTGAGCTTCTGCATGTCAGGTAAGAC
CTTAGACAAAATACTCGCAGCCTCCGCGTCCTCCGAATCCATCTCTACAG
ATACGTCACGCTTGACCTCTCCCGCGGCCGGGACGACAAGCCCTGCAGGA
AGGGTGACCTGACGGAGGGCGGGAAGGGCAGCAGCCGAGGGAATGGCAGC
AGCGACTAGTGTGTCGTCGTGTTCTGAAGAGGCTCCCTCCTCCTCGTCAT
TGTTAAGGTGGGGGCCAGGGCTGTTACCGACACTTCCAACACTACTGGCC
ACGGAGCTGCCGGCGGTGGTGGCATTGCTGGAGGTCTCACTGATAGACGC
CCTGTTGGGTGTGGGGAGGTGGGGGAGAAGCAGGAAGAGGAGGAGGGGGG
ATAAGGGACAGAATCTGAATGGATAAAGCAAAGAGAAGCTTAGGCTAGCT
GGTGGTGCGAGAACCAGCCTGGATAGAAGTACAAGAGGAGAGGGAGAGAG
AGTTTGGGGTTTTATGCTTTTAGGTTGCTTAATGCATGCGAGTTGGTCAA
CAGAATCTCGGTCAGTCCGCCCTTAGGGCAGGCAAAGCAGCAACCACCGC
CTTCAAGCTCCGCCTCCTCCCCCCACTCCTTCCTCCATTCTTCCCTCCTT
TCAAACGTTCAGACAAACGTACCATTCCGATCCGGTCTTAAGTTCCCAGG
GCGTGGCCGCAGCCGGGACGGGGTCTGTCGTGACACCACCTGCCTTAGTC
GCCGTCGATGTTGCAGCAGGGTGCGTGGCTTTGTTGACCGCGGCGGGAGC
ACCAGTTATCACATCCGCCGTGGGAGCGGCCGGTGCAGGGGTAGCCATGA
TCATTGTTCTTCTGAAGTGGGGTGTTTTTAGGTTCGACCCGTCTGGGTGC
GGCTGTGCGGTCACACAAGCAGCGGGTTTTACCAACCGCAGAAGCTTTGC
CTTAGTTGATGCTGTGATTTGTAGGAGCCACCCGCGTGGGAAAGGGGGAA
GTGAGGTACAGACGAACCAGCAGTCATTGGGAAACTATATAGAGAGGCAC
AAGCCAGGGTGTAGTGGTGGTGGGATTGTGACAAGCGCAAATAGACGCCG
AAGGCAAATGTAGGGACGTCTTCCCGCGCGAGACTTCACTTGGCATGCGA
GCCGATTCGAGCGGTCAGAGCATGTGCCGTGTTAACCGGTCGACCACCAA
CCACCTACAACCACCGACCAACGACAACCACATCCACGCATCTTACTTGG
CTACTAGGACATGGTGCGGGCAATTTCTAGAACACATGAGAATCGGAATA
TTTGTTAGACAGCTCGCCCGAGCGATGGTGGTGCAACCCCCACTC
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Coding sequence (CDS) from alignment at scaffold_9:619507..621151-

>mRNA_4783 ID=mRNA_4783|Name=jgi.p|Nanoce1779_2|587894|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_9:619507..621151- (Nannochloropsis oceanica)
CATTCCGATCCGGTCTTAAGTTCCCAGGGCGTGGCCGCAGCCGGGACGGG
GTCTGTCGTGACACCACCTGCCTTAGTCGCCGTCGATGTTGCAGCAGGGT
GCGTGGCTTTGTTGACCGCGGCGGGAGCACCAGTTATCACATCCGCCGTG
GGAGCGGCCGGTGCAGGGGTAGCCATGATCATTGTTCTTCTGAAGTGGGG
TGTTTTTAGGTTCGACCCGTCTGGGTGCGGCTGTGCGGTCACACAAGCAG
CGGGTTTTACCAACCGCAGAAGCTTTGCCTTAGTTGATGCTGTGATTTGT
AGGAGCCACCCGCGTGGGAAAGGGGGAAGTGAGGTACAGACGAACCAGCA
GTCATTGGGAAACTATATAGAGAGGCACAAGCCAGGGTGTAGTGGTGGTG
GGATTGTGACAAGCGCAAATAGACGCCGAAGGCAAATGTAGATGGCAGCA
GCGACTAGTGTGTCGTCGTGTTCTGAAGAGGCTCCCTCCTCCTCGTCATT
GTTAAGGTGGGGGCCAGGGCTGTTACCGACACTTCCAACACTACTGGCCA
CGGAGCTGCCGGCGGTGGTGGCATTGCTGGAGGTCTCACTGATAGACGCC
CATTCCGATCCGGTCTTAAGTTCCCAGGGCGTGGCCGCAGCCGGGACGGG
GTCTGTCGTGACACCACCTGCCTTAGTCGCCGTCGATGTTGCAGCAGGGT
GCGTGGCTTTGTTGACCGCGGCGGGAGCACCAGTTATCACATCCGCCGTG
GGAGCGGCCGGTGCAGGGGTAGCCATGATCATTGTTCTTCTGAAGTGGGG
TGTTTTTAGGTTCGACCCGTCTGGGTGCGGCTGTGCGGTCACACAAGCAG
CGGGTTTTACCAACCGCAGAAGCTTTGCCTTAGTTGATGCTGTGATTTGT
AGGAGCCACCCGCGTGGGAAAGGGGGAAGTGAGGTACAGACGAACCAGCA
GTCATTGGGAAACTATATAGAGAGGCACAAGCCAGGGTGTAGTGGTGGTG
GGATTGTGACAAGCGCAAATAGACGCCGAAGGCAAATGTAGATGGCAGCA
GCGACTAGTGTGTCGTCGTGTTCTGAAGAGGCTCCCTCCTCCTCGTCATT
GTTAAGGTGGGGGCCAGGGCTGTTACCGACACTTCCAACACTACTGGCCA
CGGAGCTGCCGGCGGTGGTGGCATTGCTGGAGGTCTCACTGATAGACGCC
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Synonyms
Publications