jgi.p|Nanoce1779_2|573364, mRNA_1760 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573364
Unique Name	mRNA_1760
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1963
Alignment location	scaffold_1:1444962..1446924 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573450
Track	FilteredModels2
ProteinId	573364

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1444962..1446924 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573364	gene_1760	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573364	mRNA_1760-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1760	CDS_1760	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1444962..1446924-
coding sequence from alignment at scaffold_1:1444962..1446924-

mRNA sequence

>mRNA_1760 ID=mRNA_1760|Name=jgi.p|Nanoce1779_2|573364|organism=Nannochloropsis oceanica|type=mRNA|length=1963bp
CGTATGTCACGTCTCTGGTGACGTTGAGTCCGGGGATAGTGGCTACAGGG
TCGTCGGATGGAGTGTTGAAGGTGTGGATCGTGCACGCTCCGGGAGGGGG
GTCGTCGTAGGGGTGAGGGAGTCAAAGAGAGAGGGAAAGATGGGGAGAGT
GCTCTTACCATCTCGAAGGGCGGGGTAAAAGTGAGCTATGTGGATGCCTA
CAACAGCGGAGGTAAGAACAGAGCAAGCAGAAAAAGGAGGAGAATTAAGA
AGTAAAGAAAGAAAGAAGAAAAACATAAGGTATATTCATATGCACGTCGG
CGGCATGTCAAATGTACTTGAATTGTTTTCCATTCCTTTGATCACATGAA
GCAATGGCGGGAATATGCCCGGAGTTTGCGGAGGACCCCAAACCCAGAAA
AGGAAGGATAGTTGATGGGGCAAGAGAAGAGGAGGGACAAATTGGAACGT
TAACCGACATACACAAAAGAAAACACCGCATTTGTCACATTGACAGTGCT
ACGCCCACTGTGCCACCGCGTGTCCTACGCATCCTTCTTATCATTCCTCC
TTTCATTTCATCTTCCCTGGATTCCCTTCTTTATTCTATCGATGATTGGG
GTTCCTATCCATCAATTCAAGATGTATACGTTCTTCCATCATTAACCCTT
ACGAATCTCACCGTAAAAACTGTCCACGTCTATTCTGCTCTACTTCAATT
TATCAATTCAGCTGAGACGTATTCGTCTCCTGCTGACATAGAAGGAATCA
GCCATGAAAATTAGGAGATTACAACACGTCCGACTACGTGTTTTTCAAAA
TCTATCTGCAGTTTTCTGTCACGCAAAATGGAAACTTGAAGGGCTGCTCT
TCCCTTTTTTTTTGTTTATGATTTCAAATTCTGCGCACACACTTCGCGTG
ACTCTCTATTCTTCTATTTCTATCTTCTCTCTCTTCTCCCGTCTTTATTC
TTCTTGTTGGTAAATGGTTCACATCATCAGTCAATTGATAGCCCGAACGA
ATTCTGACGTGTTGTACCATATCGACGAAGTACGCATGACAAACACGTCT
TTCCAAGTCTTTCAACACAATACCTATGTTTGCTTTTCTTTTTAGCAACT
CAACTTTAGGTCTTAAATTCTCTGCTTCCCATTTCTATTCTCAGCCGTCT
ATCTTTGTCAAACATGTACAGAAGTACTATTCATATGCCACGGCCAAAAG
TGGCAAGCCAAGTTCTCGCTTCTCTCAGCTGTATTCTCTCTATTCCGAGA
CGACACCAAGTCTCCTCGTTCTGTCGTCCCTTTTCCAGTCTCTCCTGCTC
TTCCGACTTACCCTGCCCTCCGACCCTGCCTGTCATAGCGCTCCTCTCCT
CTCGACCTCCTCCTTCCCGCGGCCTCTCCTCTTCTGCTATTTCTCTGCCT
TCACATCAACAAATCTGCTCATTGAAGACGCTCTTGGCGGTTCTGCTCTC
CACCGGAGGGACCACCCCGTCTCCAACCGACTATCCCGACCTTTCTTCTT
TCCTTCCACATCATCCACCGTTTAATTTAATCCCTCTCTCGGATCTGCTC
CCTGGTGCGGAGTTTAGACAGCCCAAGAGCTGTCATTGTTGTTGGCAGGG
AAATTGTGGCCACAAGCACCGCAGACAGGCGAGCAGGAGGAGTAGGGGGA
AGAGCGGCGCGAGGACAAGAGGCAGGAGACATGGAAGTTGCATGACGAGG
GGGAAGGACAGCGGGAAGAGATAGAATAAGAAATAGGCGGCGTAGACTCA
TGGACGGAAAAGGAGGAGGAGACAGAAAGCGGAGACAAAGGGGAACACGA
CCCCAGTGGTCCCACCACAGCAGGTATACGCGCGGAGGGTATCGAAGCAG
GCTGCTGGTGTTGCTGCAGTTGCTGCTGCCACAGCTGGTTATGCCTGTGT
CTCTTCACTTGCTGTTGCTGTCCATAGTTGTGCTGTAGTTGCTGCTGCTG
CTGCTGCTGCTGC

protein sequence of jgi.p|Nanoce1779_2|573364

>mRNA_1760-protein ID=mRNA_1760-protein|Name=jgi.p|Nanoce1779_2|573364|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MYRSTIHMPRPKVASQVLASLSCILSIPRRHQVSSFCRPFSSLSCSSDLP
CPPTLPVIALLSSRPPPSRGLSSSAISLPSHQQICSLKTLLAVLLSTGGT
TPSPTDYPDLSSFLPHHPPFNLIPLSDLLPGAEFRQPKSCHCCWQGNCGH
KHRRQASRRSRGKSGARTRGRRHGSCMTRGKDSGKR*

mRNA from alignment at scaffold_1:1444962..1446924-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1760 ID=mRNA_1760|Name=jgi.p|Nanoce1779_2|573364|organism=Nannochloropsis oceanica|type=mRNA|length=1963bp|location=Sequence derived from alignment at scaffold_1:1444962..1446924- (Nannochloropsis oceanica)
CGTATGTCACGTCTCTGGTGACGTTGAGTCCGGGGATAGTGGCTACAGGG
TCGTCGGATGGAGTGTTGAAGGTGTGGATCGTGCACGCTCCGGGAGGGGG
GTCGTCGTAGGGGTGAGGGAGTCAAAGAGAGAGGGAAAGATGGGGAGAGT
GCTCTTACCATCTCGAAGGGCGGGGTAAAAGTGAGCTATGTGGATGCCTA
CAACAGCGGAGGTAAGAACAGAGCAAGCAGAAAAAGGAGGAGAATTAAGA
AGTAAAGAAAGAAAGAAGAAAAACATAAGGTATATTCATATGCACGTCGG
CGGCATGTCAAATGTACTTGAATTGTTTTCCATTCCTTTGATCACATGAA
GCAATGGCGGGAATATGCCCGGAGTTTGCGGAGGACCCCAAACCCAGAAA
AGGAAGGATAGTTGATGGGGCAAGAGAAGAGGAGGGACAAATTGGAACGT
TAACCGACATACACAAAAGAAAACACCGCATTTGTCACATTGACAGTGCT
ACGCCCACTGTGCCACCGCGTGTCCTACGCATCCTTCTTATCATTCCTCC
TTTCATTTCATCTTCCCTGGATTCCCTTCTTTATTCTATCGATGATTGGG
GTTCCTATCCATCAATTCAAGATGTATACGTTCTTCCATCATTAACCCTT
ACGAATCTCACCGTAAAAACTGTCCACGTCTATTCTGCTCTACTTCAATT
TATCAATTCAGCTGAGACGTATTCGTCTCCTGCTGACATAGAAGGAATCA
GCCATGAAAATTAGGAGATTACAACACGTCCGACTACGTGTTTTTCAAAA
TCTATCTGCAGTTTTCTGTCACGCAAAATGGAAACTTGAAGGGCTGCTCT
TCCCTTTTTTTTTGTTTATGATTTCAAATTCTGCGCACACACTTCGCGTG
ACTCTCTATTCTTCTATTTCTATCTTCTCTCTCTTCTCCCGTCTTTATTC
TTCTTGTTGGTAAATGGTTCACATCATCAGTCAATTGATAGCCCGAACGA
ATTCTGACGTGTTGTACCATATCGACGAAGTACGCATGACAAACACGTCT
TTCCAAGTCTTTCAACACAATACCTATGTTTGCTTTTCTTTTTAGCAACT
CAACTTTAGGTCTTAAATTCTCTGCTTCCCATTTCTATTCTCAGCCGTCT
ATCTTTGTCAAACATGTACAGAAGTACTATTCATATGCCACGGCCAAAAG
TGGCAAGCCAAGTTCTCGCTTCTCTCAGCTGTATTCTCTCTATTCCGAGA
CGACACCAAGTCTCCTCGTTCTGTCGTCCCTTTTCCAGTCTCTCCTGCTC
TTCCGACTTACCCTGCCCTCCGACCCTGCCTGTCATAGCGCTCCTCTCCT
CTCGACCTCCTCCTTCCCGCGGCCTCTCCTCTTCTGCTATTTCTCTGCCT
TCACATCAACAAATCTGCTCATTGAAGACGCTCTTGGCGGTTCTGCTCTC
CACCGGAGGGACCACCCCGTCTCCAACCGACTATCCCGACCTTTCTTCTT
TCCTTCCACATCATCCACCGTTTAATTTAATCCCTCTCTCGGATCTGCTC
CCTGGTGCGGAGTTTAGACAGCCCAAGAGCTGTCATTGTTGTTGGCAGGG
AAATTGTGGCCACAAGCACCGCAGACAGGCGAGCAGGAGGAGTAGGGGGA
AGAGCGGCGCGAGGACAAGAGGCAGGAGACATGGAAGTTGCATGACGAGG
GGGAAGGACAGCGGGAAGAGATAGAATAAGAAATAGGCGGCGTAGACTCA
TGGACGGAAAAGGAGGAGGAGACAGAAAGCGGAGACAAAGGGGAACACGA
CCCCAGTGGTCCCACCACAGCAGGTATACGCGCGGAGGGTATCGAAGCAG
GCTGCTGGTGTTGCTGCAGTTGCTGCTGCCACAGCTGGTTATGCCTGTGT
CTCTTCACTTGCTGTTGCTGTCCATAGTTGTGCTGTAGTTGCTGCTGCTG
CTGCTGCTGCTGC

Coding sequence (CDS) from alignment at scaffold_1:1444962..1446924-

>mRNA_1760 ID=mRNA_1760|Name=jgi.p|Nanoce1779_2|573364|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_1:1444962..1446924- (Nannochloropsis oceanica)
ATGTACAGAAGTACTATTCATATGCCACGGCCAAAAGTGGCAAGCCAAGT
TCTCGCTTCTCTCAGCTGTATTCTCTCTATTCCGAGACGACACCAAGTCT
CCTCGTTCTGTCGTCCCTTTTCCAGTCTCTCCTGCTCTTCCGACTTACCC
TGCCCTCCGACCCTGCCTGTCATAGCGCTCCTCTCCTCTCGACCTCCTCC
TTCCCGCGGCCTCTCCTCTTCTGCTATTTCTCTGCCTTCACATCAACAAA
TCTGCTCATTGAAGACGCTCTTGGCGGTTCTGCTCTCCACCGGAGGGACC
ACCCCGTCTCCAACCGACTATCCCGACCTTTCTTCTTTCCTTCCACATCA
TCCACCGTTTAATTTAATCCCTCTCTCGGATCTGCTCCCTGGTGCGGAGT
TTAGACAGCCCAAGAGCTGTCATTGTTGTTGGCAGGGAAATTGTGGCCAC
AAGCACCGCAGACAGGCGAGCAGGAGGAGTAGGGGGAAGAGCGGCGCGAG
GACAAGAGGCAGGAGACATGGAAGTTGCATGACGAGGGGGAAGGACAGCG
GGAAGAGATAG

Synonyms

Publications