jgi.p|Nanoce1779_2|635657, mRNA_1415 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|635657
Unique NamemRNA_1415
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1416
Alignment locationscaffold_1:501548..503042 -

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Properties
Property NameValue
TranscriptId635743
TrackFilteredModels2
ProteinId635657
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:501548..503042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635657gene_1415Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635657mRNA_1415-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1415CDS_1415Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1415 ID=mRNA_1415|Name=jgi.p|Nanoce1779_2|635657|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
ATGACAGTGCAGGCCTTCACGCGACTACCTCTTCCAAGCAGCGGCAGGAC
ATTAACCTGTATTTCCTCCCAGCCCAAGCCCCATCTGGCGCCCAAAACCT
GCGCCCCGCCGACAACCTCCTCTCCCTCCTCCTCTGTACTCTACGCCTCG
TTCTTTGCGCCCAAACCGAGCGTGCCCAACAAGGGCAAGAAGGAAGGAAA
AGGGGTGCGGCAGGTTCGGTCTTACTTTGAGTACTGGAATCAACGGCGGA
TGGACGAGGCAGTGGCTTGCTTCAGCGAGGACTGCTCTTATGAGGACACG
CTCTATCCATGTGCCTTTATTGGTAAAGAAGCCTTGAAAAAGCATTTGTT
CCGGGTCGCAGACGCTCTGCCCGACTCCTTCGTGTTCGTGCTCGACGAGA
TAAGTGATGGTGGGAACGTGGTTGGCGTACAGTGGCACGTGGAATCAGAA
GGCAATCAACTCCCTTTCACACGTGGATCGTCTATTTATAAACTTGATCC
CTCTGGGACGGGAAAGCTATCCTATGGCTTTGATGTGCCTGAGCCGACCG
TAAAAAGCGGAAGTGCCAGCCTCGCCCTCCTCTCCCTGGTGGGGCGCCTG
TTAGACGAACCCCGCAAGGTGCTGCCTTTGGCTGGGTTTTTGTTTTATTG
CTGGTTTGTATTTTTGAGTACTGTGGCTCCAGGACCAAATGCATTGAGTT
TAGATCCGGCAACGTGGGCCGAAGTTCGAGACCTTTCGCTTAATTTCTGG
CTGGTCATGCCGGCCATCGCCCCATCGTCTTCTCCTGTCTTGCATCCTTG
CTTGGAGGGTCTTTTTAATTTCCTCTTGGCCTGGGCGGCGCTTTTTAGTG
GGTTTATGGTAGATGGAAAGGTACTTCGGTCTGGACAGAGGGAAGGGGAG
GTGGAGGAAGAGGAGAAGAAGGAGGGCAATGGCTTTTTGCCCTATGTGTT
GGGGATGCAGCTGTTGACGAACGCGATTTACCTGCCTTACTTGGTGGTGA
GGAAGAAGGCGTGGAATCCGCGGGAGGAAGGGAGGGAGGAGGGGTATACA
CTCACTAAAGCGGAGGCGTTTGGAGAGAGCAAGATTCCTCCGTTGGTGTT
CACGGCTGTGGGTGTGTTGGCTTTGGTCTGGGCCGGGCTAGCCAGGGGTG
AGATGTATGGGGGAGACGAGAGGTGGGGAACGTTTTTTGATATCTTAAGG
AGGGATCGGTTGACATTTAGTTTTGTGGTAGATTTGATTTACTTTTGGGT
GTTTCAGGGGTGGCTGATGGGGGATGACTGGAAGAGGAGGGTGGGAGGGA
GGGAGGGAGGAGGGGTGTGGTTGGCTTTGTGTAAGACAGTACCGTTTTGG
GGGTTGGCTGCTTATTTGGTAGCAAGGCCGGCGTTGTTGCCGGCAGGAGG
GGAGGAAGAAGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|635657

>mRNA_1415-protein ID=mRNA_1415-protein|Name=jgi.p|Nanoce1779_2|635657|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MTVQAFTRLPLPSSGRTLTCISSQPKPHLAPKTCAPPTTSSPSSSVLYAS
FFAPKPSVPNKGKKEGKGVRQVRSYFEYWNQRRMDEAVACFSEDCSYEDT
LYPCAFIGKEALKKHLFRVADALPDSFVFVLDEISDGGNVVGVQWHVESE
GNQLPFTRGSSIYKLDPSGTGKLSYGFDVPEPTVKSGSASLALLSLVGRL
LDEPRKVLPLAGFLFYCWFVFLSTVAPGPNALSLDPATWAEVRDLSLNFW
LVMPAIAPSSSPVLHPCLEGLFNFLLAWAALFSGFMVDGKVLRSGQREGE
VEEEEKKEGNGFLPYVLGMQLLTNAIYLPYLVVRKKAWNPREEGREEGYT
LTKAEAFGESKIPPLVFTAVGVLALVWAGLARGEMYGGDERWGTFFDILR
RDRLTFSFVVDLIYFWVFQGWLMGDDWKRRVGGREGGGVWLALCKTVPFW
GLAAYLVARPALLPAGGEEEE*
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mRNA from alignment at scaffold_1:501548..503042-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1415 ID=mRNA_1415|Name=jgi.p|Nanoce1779_2|635657|organism=Nannochloropsis oceanica|type=mRNA|length=1495bp|location=Sequence derived from alignment at scaffold_1:501548..503042- (Nannochloropsis oceanica)
ATGACAGTGCAGGCCTTCACGCGACTACCTCTTCCAAGCAGCGGCAGGAC
ATTAACCTGTATTTCCTCCCAGCCCAAGCCCCATCTGGCGCCCAAAACCT
GCGCCCCGCCGACAACCTCCTCTCCCTCCTCCTCTGTACTCTACGCCTCG
TTCTTTGCGCCCAAACCGAGCGTGCCCAACAAGGGCAAGAAGGAAGGAAA
AGGGGTGCGGCAGGTTCGGTCTTACTTTGAGTACTGGAATCAACGGCGGA
TGGACGAGGCAGTGGCTTGCTTCAGCGGTAGGTTAAGATGAGGATTCGAG
GGGAAGAGGCCACACGCTAACACTCTCTTATTTTTCCTCTTTCTCCCCAT
TCCAAGAGGACTGCTCTTATGAGGACACGCTCTATCCATGTGCCTTTATT
GGTAAAGAAGCCTTGAAAAAGCATTTGTTCCGGGTCGCAGACGCTCTGCC
CGACTCCTTCGTGTTCGTGCTCGACGAGATAAGTGATGGTGGGAACGTGG
TTGGCGTACAGTGGCACGTGGAATCAGAAGGCAATCAACTCCCTTTCACA
CGTGGATCGTCTATTTATAAACTTGATCCCTCTGGGACGGGAAAGCTATC
CTATGGCTTTGATGTGCCTGAGCCGACCGTAAAAAGCGGAAGTGCCAGCC
TCGCCCTCCTCTCCCTGGTGGGGCGCCTGTTAGACGAACCCCGCAAGGTG
CTGCCTTTGGCTGGGTTTTTGTTTTATTGCTGGTTTGTATTTTTGAGTAC
TGTGGCTCCAGGACCAAATGCATTGAGTTTAGATCCGGCAACGTGGGCCG
AAGTTCGAGACCTTTCGCTTAATTTCTGGCTGGTCATGCCGGCCATCGCC
CCATCGTCTTCTCCTGTCTTGCATCCTTGCTTGGAGGGTCTTTTTAATTT
CCTCTTGGCCTGGGCGGCGCTTTTTAGTGGGTTTATGGTAGATGGAAAGG
TACTTCGGTCTGGACAGAGGGAAGGGGAGGTGGAGGAAGAGGAGAAGAAG
GAGGGCAATGGCTTTTTGCCCTATGTGTTGGGGATGCAGCTGTTGACGAA
CGCGATTTACCTGCCTTACTTGGTGGTGAGGAAGAAGGCGTGGAATCCGC
GGGAGGAAGGGAGGGAGGAGGGGTATACACTCACTAAAGCGGAGGCGTTT
GGAGAGAGCAAGATTCCTCCGTTGGTGTTCACGGCTGTGGGTGTGTTGGC
TTTGGTCTGGGCCGGGCTAGCCAGGGGTGAGATGTATGGGGGAGACGAGA
GGTGGGGAACGTTTTTTGATATCTTAAGGAGGGATCGGTTGACATTTAGT
TTTGTGGTAGATTTGATTTACTTTTGGGTGTTTCAGGGGTGGCTGATGGG
GGATGACTGGAAGAGGAGGGTGGGAGGGAGGGAGGGAGGAGGGGTGTGGT
TGGCTTTGTGTAAGACAGTACCGTTTTGGGGGTTGGCTGCTTATTTGGTA
GCAAGGCCGGCGTTGTTGCCGGCAGGAGGGGAGGAAGAAGAGTAG
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Coding sequence (CDS) from alignment at scaffold_1:501548..503042-

>mRNA_1415 ID=mRNA_1415|Name=jgi.p|Nanoce1779_2|635657|organism=Nannochloropsis oceanica|type=CDS|length=2832bp|location=Sequence derived from alignment at scaffold_1:501548..503042- (Nannochloropsis oceanica)
AGGACTGCTCTTATGAGGACACGCTCTATCCATGTGCCTTTATTGGTAAA
GAAGCCTTGAAAAAGCATTTGTTCCGGGTCGCAGACGCTCTGCCCGACTC
CTTCGTGTTCGTGCTCGACGAGATAAGTGATGGTGGGAACGTGGTTGGCG
TACAGTGGCACGTGGAATCAGAAGGCAATCAACTCCCTTTCACACGTGGA
TCGTCTATTTATAAACTTGATCCCTCTGGGACGGGAAAGCTATCCTATGG
CTTTGATGTGCCTGAGCCGACCGTAAAAAGCGGAAGTGCCAGCCTCGCCC
TCCTCTCCCTGGTGGGGCGCCTGTTAGACGAACCCCGCAAGGTGCTGCCT
TTGGCTGGGTTTTTGTTTTATTGCTGGTTTGTATTTTTGAGTACTGTGGC
TCCAGGACCAAATGCATTGAGTTTAGATCCGGCAACGTGGGCCGAAGTTC
GAGACCTTTCGCTTAATTTCTGGCTGGTCATGCCGGCCATCGCCCCATCG
TCTTCTCCTGTCTTGCATCCTTGCTTGGAGGGTCTTTTTAATTTCCTCTT
GGCCTGGGCGGCGCTTTTTAGTGGGTTTATGGTAGATGGAAAGGTACTTC
GGTCTGGACAGAGGGAAGGGGAGGTGGAGGAAGAGGAGAAGAAGGAGGGC
AATGGCTTTTTGCCCTATGTGTTGGGGATGCAGCTGTTGACGAACGCGAT
TTACCTGCCTTACTTGGTGGTGAGGAAGAAGGCGTGGAATCCGCGGGAGG
AAGGGAGGGAGGAGGGGTATACACTCACTAAAGCGGAGGCGTTTGGAGAG
AGCAAGATTCCTCCGTTGGTGTTCACGGCTGTGGGTGTGTTGGCTTTGGT
CTGGGCCGGGCTAGCCAGGGGTGAGATGTATGGGGGAGACGAGAGGTGGG
GAACGTTTTTTGATATCTTAAGGAGGGATCGGTTGACATTTAGTTTTGTG
GTAGATTTGATTTACTTTTGGGTGTTTCAGGGGTGGCTGATGGGGGATGA
CTGGAAGAGGAGGGTGGGAGGGAGGGAGGGAGGAGGGGTGTGGTTGGCTT
TGTGTAAGACAGTACCGTTTTGGGGGTTGGCTGCTTATTTGGTAGCAAGG
CCGGCGTTGTTGCCGGCAGGAGGGGAGGAAGAAGAGTAGATGACAGTGCA
GGCCTTCACGCGACTACCTCTTCCAAGCAGCGGCAGGACATTAACCTGTA
TTTCCTCCCAGCCCAAGCCCCATCTGGCGCCCAAAACCTGCGCCCCGCCG
ACAACCTCCTCTCCCTCCTCCTCTGTACTCTACGCCTCGTTCTTTGCGCC
CAAACCGAGCGTGCCCAACAAGGGCAAGAAGGAAGGAAAAGGGGTGCGGC
AGGTTCGGTCTTACTTTGAGTACTGGAATCAACGGCGGATGGACGAGGCA
GTGGCTTGCTTCAGCGAGGACTGCTCTTATGAGGACACGCTCTATCCATG
TGCCTTTATTGGTAAAGAAGCCTTGAAAAAGCATTTGTTCCGGGTCGCAG
ACGCTCTGCCCGACTCCTTCGTGTTCGTGCTCGACGAGATAAGTGATGGT
GGGAACGTGGTTGGCGTACAGTGGCACGTGGAATCAGAAGGCAATCAACT
CCCTTTCACACGTGGATCGTCTATTTATAAACTTGATCCCTCTGGGACGG
GAAAGCTATCCTATGGCTTTGATGTGCCTGAGCCGACCGTAAAAAGCGGA
AGTGCCAGCCTCGCCCTCCTCTCCCTGGTGGGGCGCCTGTTAGACGAACC
CCGCAAGGTGCTGCCTTTGGCTGGGTTTTTGTTTTATTGCTGGTTTGTAT
TTTTGAGTACTGTGGCTCCAGGACCAAATGCATTGAGTTTAGATCCGGCA
ACGTGGGCCGAAGTTCGAGACCTTTCGCTTAATTTCTGGCTGGTCATGCC
GGCCATCGCCCCATCGTCTTCTCCTGTCTTGCATCCTTGCTTGGAGGGTC
TTTTTAATTTCCTCTTGGCCTGGGCGGCGCTTTTTAGTGGGTTTATGGTA
GATGGAAAGGTACTTCGGTCTGGACAGAGGGAAGGGGAGGTGGAGGAAGA
GGAGAAGAAGGAGGGCAATGGCTTTTTGCCCTATGTGTTGGGGATGCAGC
TGTTGACGAACGCGATTTACCTGCCTTACTTGGTGGTGAGGAAGAAGGCG
TGGAATCCGCGGGAGGAAGGGAGGGAGGAGGGGTATACACTCACTAAAGC
GGAGGCGTTTGGAGAGAGCAAGATTCCTCCGTTGGTGTTCACGGCTGTGG
GTGTGTTGGCTTTGGTCTGGGCCGGGCTAGCCAGGGGTGAGATGTATGGG
GGAGACGAGAGGTGGGGAACGTTTTTTGATATCTTAAGGAGGGATCGGTT
GACATTTAGTTTTGTGGTAGATTTGATTTACTTTTGGGTGTTTCAGGGGT
GGCTGATGGGGGATGACTGGAAGAGGAGGGTGGGAGGGAGGGAGGGAGGA
GGGGTGTGGTTGGCTTTGTGTAAGACAGTACCGTTTTGGGGGTTGGCTGC
TTATTTGGTAGCAAGGCCGGCGTTGTTGCCGGCAGGAGGGGAGGAAGAAG
AGTAGATGACAGTGCAGGCCTTCACGCGACTACCTCTTCCAAGCAGCGGC
AGGACATTAACCTGTATTTCCTCCCAGCCCAAGCCCCATCTGGCGCCCAA
AACCTGCGCCCCGCCGACAACCTCCTCTCCCTCCTCCTCTGTACTCTACG
CCTCGTTCTTTGCGCCCAAACCGAGCGTGCCCAACAAGGGCAAGAAGGAA
GGAAAAGGGGTGCGGCAGGTTCGGTCTTACTTTGAGTACTGGAATCAACG
GCGGATGGACGAGGCAGTGGCTTGCTTCAGCG
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Synonyms
Publications