jgi.p|Nanoce1779_2|630132, mRNA_4236 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630132
Unique Name	mRNA_4236
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1950
Alignment location	scaffold_10:82732..85048 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630218
Track	FilteredModels2
ProteinId	630132

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:82732..85048 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630132	gene_4236	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630132	mRNA_4236-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4236	CDS_4236	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:82732..85048+
coding sequence from alignment at scaffold_10:82732..85048+

mRNA sequence

>mRNA_4236 ID=mRNA_4236|Name=jgi.p|Nanoce1779_2|630132|organism=Nannochloropsis oceanica|type=mRNA|length=1950bp
GCTTCTTTTTCATAGCACAATGCTTCTTTGACAATTTCATCTGTTAATAT
TGCAGAATTTCGAATATTAGAGATCTCTTACCTTGCACATGTCGTCCAAC
TGTCTGCTTAAGACACTGTCGGACAGAAGACAGTGGAAAATACTTGCGTA
AGATGCGCCATGAGAAAATGGGCCCACCTTCCGGCAGTCCTCTCTCAGTG
GACCTCGAGATACCAACCCTTTGGGGGCCTGTAAGCACCGGCCTCTAGCC
CTATATAGCAATGGGAGTCCTGACATGCATGTCTTCAGTATGTCTCGTAT
GCCTAAATGGAGGGACCGGGGTCTCCAGTACCTGTTGTCTACCACCGAGC
CGCGACCACTAACGCTTAGCCTCCCCACTCCCCTCACCACATGCTTCCCT
CTCCCCCCACCAAAAACACCCGTACGCCATCCAACCCCCACACTATCCCT
ACAGTTATGGCAGACTACAAAAAAGTACGCCATCGGCAACGGCCTCGACC
GGTAGAGCGCCCCAAACCGGACGGCAACTTCTGGGCCAAGTTTATCAAGC
CCACCGACCTCTCCTTCCCCGGCGCCGTCTACGCCTTGGATTTTCACCCT
CTGGCCCCGCATGATGCCCTCGTCACAGCCTCGGCACGATTGTCCTTAGT
CTCAATCAGTCGTGGTGCACCCAAAGTCAGCAAGACGTTTTCCCGGCTGA
ATGGTTTGGCGTACTCCGGAGTCTTCCGTCCAACCGACGGGCGGCTCATA
GCGTGTGGAGACGATGGGGGCGTCGTCACTGTCTTTGACGTGGCCACCAA
GGCCTCCCTCCGTCAATTTACCACCGCAGCCAATCACCGTGGTACCACAG
GCGCAGCTGCTCGTGTTGTGCGCTGGCGAAGGGATGGCCTGGCATTGTTT
TCGGGGTCGGATGATAAGTGCGTGCGGTATTGGGACTTGGGGACAGGCCA
GCTCTTGACCACAATCCCACAAGCCCATGGGGACTACGTCCGTTGCGGTG
CCACAAACCCTGCAGCAGCCTCGGAGATGTTCGTGTCAGGCTCCGTCGGT
CTCTCCCCCAACAAGGGCAAGCTCATGGTCGGGAAAGCTGATGGATGCCT
CTCCATTCGCACCCGCCGCGCCGCCACCAGCACGACCTCGTCCTCCCTCC
CTTCCTCGTCCTCTGGTCTTTTCCCCAAAACCAGCACTAATCCCCTGCTT
TTCGGTGGTACGACCAAATATTTCCAACGAGGAAAAAATGCTGTTGCGTC
CACGGGGGATTTTGAGGTGGAGCTGGCGAAGCGTCATCGACTCGCGCCTT
ACGACGTAGCCTTGAAGGGATTCAAGTACCATGAGGCTCTGGATAGAGCG
CTGGAAAGTCGGAATCCGCGTACGATCGTCGCTGTTCTCGACGAGCTGGT
GATGCGGAGGGGATTGAAGATTTCGCTTACCGGGAGGGATGAAGCGGGCC
TGGAGCCGTTACTGGCTTTCTTGGCACGATATTTGAATCATCCTGATTTT
GCGCTGTCCCTTGGAGAGGCCTGCCATTTTGTACTAGACATGTACGCACC
TATGGTGGGGCAGTCTGCGGTGCTTGACGAGCTAATGGGGAGGGTGGCCC
GGGGGGTTAAGGCTGAAGTTGGAGTGCAGAGGGAGATGCTGGAGTTGCTG
GGAGCGATGGAGATGGTGATGGCGACCCAGATCGAGGGGGGGGGGGGGGG
GGGGGGGAGGGAGGGGGGGGGGGATGTGGAGTTGTTAGAGGGGGATGGAA
AGGAGGAGAAGGAGGAGAAGGAGGGGGAGGAGGCCAGTGACGACGAGGAA
GAGGGAGTGGAAACGCCAGTGTAAAACTCAATGTGACGATAGAAAACGTG
CATTGCAAATTTTGATAAGGAGCAGAAGGGAAATTCGCCGCATTACACAA
AACTCAATAGAAACAGAGAAATTTCAAATCAAGTGAGCGTTTGAGAGCAT

protein sequence of jgi.p|Nanoce1779_2|630132

>mRNA_4236-protein ID=mRNA_4236-protein|Name=jgi.p|Nanoce1779_2|630132|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MLPSPPTKNTRTPSNPHTIPTVMADYKKVRHRQRPRPVERPKPDGNFWAK
FIKPTDLSFPGAVYALDFHPLAPHDALVTASARLSLVSISRGAPKVSKTF
SRLNGLAYSGVFRPTDGRLIACGDDGGVVTVFDVATKASLRQFTTAANHR
GTTGAAARVVRWRRDGLALFSGSDDKCVRYWDLGTGQLLTTIPQAHGDYV
RCGATNPAAASEMFVSGSVGLSPNKGKLMVGKADGCLSIRTRRAATSTTS
SSLPSSSSGLFPKTSTNPLLFGGTTKYFQRGKNAVASTGDFEVELAKRHR
LAPYDVALKGFKYHEALDRALESRNPRTIVAVLDELVMRRGLKISLTGRD
EAGLEPLLAFLARYLNHPDFALSLGEACHFVLDMYAPMVGQSAVLDELMG
RVARGVKAEVGVQREMLELLGAMEMVMATQIEGGGGGGGREGGGDVELLE
GDGKEEKEEKEGEEASDDEEEGVETPV*

mRNA from alignment at scaffold_10:82732..85048+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4236 ID=mRNA_4236|Name=jgi.p|Nanoce1779_2|630132|organism=Nannochloropsis oceanica|type=mRNA|length=2317bp|location=Sequence derived from alignment at scaffold_10:82732..85048+ (Nannochloropsis oceanica)
GCTTCTTTTTCATAGCACAATGCTTCTTTGACAATTTCATCTGTTAATAT
TGCAGAATTTCGAATATTAGAGATCTCTTACCTTGCACATGTCGTCCAAC
TGTCTGCTTAAGACACTGTCGGACAGAAGACAGTGGAAAATACTTGCGTA
AGATGCGCCATGAGAAAATGGGCCCACCTTCCGGCAGTCCTCTCTCAGTG
GACCTCGAGATACCAACCCTTTGGGGGCCTGTAAGCACCGGCCTCTAGCC
CTATATAGCAATGGGAGTCCTGACATGCATGTCTTCAGTATGTCTCGTAT
GCCTAAATGGAGGGACCGGGGTCTCCAGTACCTGTTGTCTACCACCGAGC
CGCGACCACTAACGCTTAGCCTCCCCACTCCCCTCACCACATGCTTCCCT
CTCCCCCCACCAAAAACACCCGTACGCCATCCAACCCCCACACTATCCCT
ACAGTTATGGCAGACTACAAAAAAGTACGCCATCGGCAACGGCCTCGACC
GGTAGAGCGCCCCAAACCGGACGGCAACTTCTGGGCCAAGTTTATCAAGC
CCACCGACCTCTCCTTCCCCGGCGCCGTCTACGCCTTGGATTTTCACCCT
CTGGCCCCGCATGATGCCCTCGTCACAGCCTCGGCACGATTGTCCTTAGT
CTCAATCAGTCGTGGTGCACCCAAAGTCAGCAAGACGTTTTCCCGGCTGA
ATGGTTTGGCGTACTCCGGAGTCTTCCGTCCAACCGACGGGCGGCTCATA
GCGTGTGGAGACGATGGGGGCGTCGTCACTGTCTTTGACGTGGCCACCAA
GGCCTCCCTCCGTCAATTTACCACCGCAGCCAATCACCGTGGTACCACAG
GCGCAGCTGCTCGTGTTGTGCGCTGGCGAAGGGATGGCCTGGCATTGTTT
TCGGGGTCGGATGATAAGTGCGTGCGGTATTGGGACTTGGGGACAGGCCA
GCTCTTGACCACAATCCCACAAGCCCATGGGGACTACGTCCGTTGCGGTG
CCACAAACCCTGCAGCAGCCTCGGAGATGTTCGTGTCAGGCTCGTATGAC
CACACATTGAAACTATGGGACATGCGAGGGAGGGGGGGAGGGGGGGGGAG
GGAGCAATCGGCCAGTTGCTAGCTTTGACCACGGCAGTCCTGTGGAGGCC
TGCGTGGTGCTACCAGGGGGCTCCTTGCTCGTCTCCGCCGGAACAGACAC
TATCAAAATATGGGATTTGCTCGGCGGCGGTGGAGAAGGCAATAGTCCTC
TGCATTCTTTCTCAAATCACGCCAAGACCATCACTAGCCTTACAATCGAT
CGAGAGGGCTCTCGCCTGCTGTCCTCCTCACTAGATGGGCACGTCAAAGT
GTACGACCTTCAGACGTACGATGTCCTCCACTCTCTCCGGTTCTCCGGAC
CCCTCCTCAGCGTCGGTCTCTCCCCCAACAAGGGCAAGCTCATGGTCGGG
AAAGCTGATGGATGCCTCTCCATTCGCACCCGCCGCGCCGCCACCAGCAC
GACCTCGTCCTCCCTCCCTTCCTCGTCCTCTGGTCTTTTCCCCAAAACCA
GCACTAATCCCCTGCTTTTCGGTGGTACGACCAAATATTTCCAACGAGGA
AAAAATGCTGTTGCGTCCACGGGGGATTTTGAGGTGGAGCTGGCGAAGCG
TCATCGACTCGCGCCTTACGACGTAGCCTTGAAGGGATTCAAGTACCATG
AGGCTCTGGATAGAGCGCTGGAAAGTCGGAATCCGCGTACGATCGTCGCT
GTTCTCGACGAGCTGGTGATGCGGAGGGGATTGAAGATTTCGCTTACCGG
GAGGGATGAAGCGGGCCTGGAGCCGTTACTGGCTTTCTTGGCACGATATT
TGAATCATCCTGATTTTGCGCTGTCCCTTGGAGAGGCCTGCCATTTTGTA
CTAGACATGTACGCACCTATGGTGGGGCAGTCTGCGGTGCTTGACGAGCT
AATGGGGAGGGTGGCCCGGGGGGTTAAGGCTGAAGTTGGAGTGCAGAGGG
AGATGCTGGAGTTGCTGGGAGCGATGGAGATGGTGATGGCGACCCAGATC
GAGGGGGGGGGGGGGGGGGGGGGGAGGGAGGGGGGGGGGGATGTGGAGTT
GTTAGAGGGGGATGGAAAGGAGGAGAAGGAGGAGAAGGAGGGGGAGGAGG
CCAGTGACGACGAGGAAGAGGGAGTGGAAACGCCAGTGTAAAACTCAATG
TGACGATAGAAAACGTGCATTGCAAATTTTGATAAGGAGCAGAAGGGAAA
TTCGCCGCATTACACAAAACTCAATAGAAACAGAGAAATTTCAAATCAAG
TGAGCGTTTGAGAGCAT

Coding sequence (CDS) from alignment at scaffold_10:82732..85048+

>mRNA_4236 ID=mRNA_4236|Name=jgi.p|Nanoce1779_2|630132|organism=Nannochloropsis oceanica|type=CDS|length=2868bp|location=Sequence derived from alignment at scaffold_10:82732..85048+ (Nannochloropsis oceanica)
ATGCTTCCCTCTCCCCCCACCAAAAACACCCGTACGCCATCCAACCCCCA
CACTATCCCTACAGTTATGGCAGACTACAAAAAAGTACGCCATCGGCAAC
GGCCTCGACCGGTAGAGCGCCCCAAACCGGACGGCAACTTCTGGGCCAAG
TTTATCAAGCCCACCGACCTCTCCTTCCCCGGCGCCGTCTACGCCTTGGA
TTTTCACCCTCTGGCCCCGCATGATGCCCTCGTCACAGCCTCGGCACGAT
TGTCCTTAGTCTCAATCAGTCGTGGTGCACCCAAAGTCAGCAAGACGTTT
TCCCGGCTGAATGGTTTGGCGTACTCCGGAGTCTTCCGTCCAACCGACGG
GCGGCTCATAGCGTGTGGAGACGATGGGGGCGTCGTCACTGTCTTTGACG
TGGCCACCAAGGCCTCCCTCCGTCAATTTACCACCGCAGCCAATCACCGT
GGTACCACAGGCGCAGCTGCTCGTGTTGTGCGCTGGCGAAGGGATGGCCT
GGCATTGTTTTCGGGGTCGGATGATAAGTGCGTGCGGTATTGGGACTTGG
GGACAGGCCAGCTCTTGACCACAATCCCACAAGCCCATGGGGACTACGTC
CGTTGCGGTGCCACAAACCCTGCAGCAGCCTCGGAGATGTTCGTGTCAGG
CTCCGTCGGTCTCTCCCCCAACAAGGGCAAGCTCATGGTCGGGAAAGCTG
ATGGATGCCTCTCCATTCGCACCCGCCGCGCCGCCACCAGCACGACCTCG
TCCTCCCTCCCTTCCTCGTCCTCTGGTCTTTTCCCCAAAACCAGCACTAA
TCCCCTGCTTTTCGGTGGTACGACCAAATATTTCCAACGAGGAAAAAATG
CTGTTGCGTCCACGGGGGATTTTGAGGTGGAGCTGGCGAAGCGTCATCGA
CTCGCGCCTTACGACGTAGCCTTGAAGGGATTCAAGTACCATGAGGCTCT
GGATAGAGCGCTGGAAAGTCGGAATCCGCGTACGATCGTCGCTGTTCTCG
ACGAGCTGGTGATGCGGAGGGGATTGAAGATTTCGCTTACCGGGAGGGAT
GAAGCGGGCCTGGAGCCGTTACTGGCTTTCTTGGCACGATATTTGAATCA
TCCTGATTTTGCGCTGTCCCTTGGAGAGGCCTGCCATTTTGTACTAGACA
TGTACGCACCTATGGTGGGGCAGTCTGCGGTGCTTGACGAGCTAATGGGG
AGGGTGGCCCGGGGGGTTAAGGCTGAAGTTGGAGTGCAGAGGGAGATGCT
GGAGTTGCTGGGAGCGATGGAGATGGTGATGGCGACCCAGATCGAGGGGG
GGGGGGGGGGGGGGGGGAGGGAGGGGGGGGGGGATGTGGAGTTGTTAGAG
GGGGATGGAAAGGAGGAGAAGGAGGAGAAGGAGGGGGAGGAGGCCAGTGA
CGACGAGGAAGAGGGAGTGGAAACGCCAGTGTAAATGCTTCCCTCTCCCC
CCACCAAAAACACCCGTACGCCATCCAACCCCCACACTATCCCTACAGTT
ATGGCAGACTACAAAAAAGTACGCCATCGGCAACGGCCTCGACCGGTAGA
GCGCCCCAAACCGGACGGCAACTTCTGGGCCAAGTTTATCAAGCCCACCG
ACCTCTCCTTCCCCGGCGCCGTCTACGCCTTGGATTTTCACCCTCTGGCC
CCGCATGATGCCCTCGTCACAGCCTCGGCACGATTGTCCTTAGTCTCAAT
CAGTCGTGGTGCACCCAAAGTCAGCAAGACGTTTTCCCGGCTGAATGGTT
TGGCGTACTCCGGAGTCTTCCGTCCAACCGACGGGCGGCTCATAGCGTGT
GGAGACGATGGGGGCGTCGTCACTGTCTTTGACGTGGCCACCAAGGCCTC
CCTCCGTCAATTTACCACCGCAGCCAATCACCGTGGTACCACAGGCGCAG
CTGCTCGTGTTGTGCGCTGGCGAAGGGATGGCCTGGCATTGTTTTCGGGG
TCGGATGATAAGTGCGTGCGGTATTGGGACTTGGGGACAGGCCAGCTCTT
GACCACAATCCCACAAGCCCATGGGGACTACGTCCGTTGCGGTGCCACAA
ACCCTGCAGCAGCCTCGGAGATGTTCGTGTCAGGCTCCGTCGGTCTCTCC
CCCAACAAGGGCAAGCTCATGGTCGGGAAAGCTGATGGATGCCTCTCCAT
TCGCACCCGCCGCGCCGCCACCAGCACGACCTCGTCCTCCCTCCCTTCCT
CGTCCTCTGGTCTTTTCCCCAAAACCAGCACTAATCCCCTGCTTTTCGGT
GGTACGACCAAATATTTCCAACGAGGAAAAAATGCTGTTGCGTCCACGGG
GGATTTTGAGGTGGAGCTGGCGAAGCGTCATCGACTCGCGCCTTACGACG
TAGCCTTGAAGGGATTCAAGTACCATGAGGCTCTGGATAGAGCGCTGGAA
AGTCGGAATCCGCGTACGATCGTCGCTGTTCTCGACGAGCTGGTGATGCG
GAGGGGATTGAAGATTTCGCTTACCGGGAGGGATGAAGCGGGCCTGGAGC
CGTTACTGGCTTTCTTGGCACGATATTTGAATCATCCTGATTTTGCGCTG
TCCCTTGGAGAGGCCTGCCATTTTGTACTAGACATGTACGCACCTATGGT
GGGGCAGTCTGCGGTGCTTGACGAGCTAATGGGGAGGGTGGCCCGGGGGG
TTAAGGCTGAAGTTGGAGTGCAGAGGGAGATGCTGGAGTTGCTGGGAGCG
ATGGAGATGGTGATGGCGACCCAGATCGAGGGGGGGGGGGGGGGGGGGGG
GAGGGAGGGGGGGGGGGATGTGGAGTTGTTAGAGGGGGATGGAAAGGAGG
AGAAGGAGGAGAAGGAGGGGGAGGAGGCCAGTGACGACGAGGAAGAGGGA
GTGGAAACGCCAGTGTAA

Synonyms

Publications