jgi.p|Nanoce1779_2|37642, mRNA_5796 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|37642
Unique NamemRNA_5796
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1100
Alignment locationscaffold_11:592009..593108 +

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Properties
Property NameValue
TranscriptId37728
TrackFilteredModels2
ProteinId37642
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:592009..593108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|37642gene_5796Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|37642mRNA_5796-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5796CDS_5796Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5796 ID=mRNA_5796|Name=jgi.p|Nanoce1779_2|37642|organism=Nannochloropsis oceanica|type=mRNA|length=1100bp
AAGGGGGAAGGGAGGGGAAAAGTGAGAGGAGAGAGTTGGGAGTGCGTGCG
GTAGCTTGTAAGTTGTTGCTGCGGTTGGTAGATGTTATCCTCTTCCACCA
GAGCGAGCGGTGGTTGTACAGCGATTATACGAAGCCGTCTTGGTGGGAGT
AAGCTCGGTGATGAAAGGACAGGACGAGCTATTATTTCATGCGTTTGCTT
CGTTTGTGGCCGAGTTGTGCACGCGGGAAGCGGAGGTATTGGGACGAGGC
TTGAACATGCAGATGGTGGAGTTGATGCTAGGGATGGCGGGTTGTTAAAA
CGTGCAGTTTCGACGTTGGCGTTGGAGTTCTGGGAGGTTTTGATGGAGGT
ACCTGTTGTTGAACGCGATCCTCTCTTGAGAGAACATTTATGTCTGCGGC
TGGTTGCCGTTGGTGGAAAGGTTAGCCTACCCCTCCCGTTTCACCTCTTG
GGAGGACGCGTTGAACTTGGAAGAGGAAGACTTTGTCGGGTACAGGGAAG
GAGATGCCCTCAAGACGGTGCTCGAGTCGTGCTACGCGATTTTGCGGGTG
CAATTTTCGAGCAGCTCTGGCAAGGTTCACAGCAGCAGCAGCAGCAGCAG
CAGCAAAAGGAGGATGGGAATTCATCAGCAACCGCAACCACACATTTTCT
TCTTAATATTCTTCAGCATAATCTTTCCATTCCCAGCGTAGCCAACACCG
ATCACCCCCTCATCCTCCGTGCCCTCCACCATCTCCTGGGCACCTATCAA
CCCCTCCCCCTCCTCCCCCTCCCTCCCTATCCTTTATCTGTCTGCATTCA
CAACACCAACAACAATTTTAACTCTGGCCCCGTTCGCTCCTCCTCACCTT
CCTCCCTCCCGTCACTCCTCCACGGTCCCGCGCTCCTCCTCATTCCTTGT
CTCTCTCGCCCCGACACCGACAAGCAAGCTATGGCCTTCCGCTCCATCTG
CATCGGCCCCCTCCCTCCTTCCCTCCCCCATCCTCGCTCCAGGCCACTGA
TTTAATCCTGACTGGGATCAGACATGCGGAGGAGGGGAAGTGTGAGATGG
CTGCGAAACTCCTACTCATTGAATCCATCGTTAGAACTATCCTATCCGTA
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protein sequence of jgi.p|Nanoce1779_2|37642

>mRNA_5796-protein ID=mRNA_5796-protein|Name=jgi.p|Nanoce1779_2|37642|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MLSSSTRASGGCTAIIRSRLGGSKLGDERTGRAIISCVCFVCGRVVHAGS
GGIGTRLEHADGGVDARDGGLLKRAVSTLALEFWEVLMEVPVVERDPLLR
EHLCLRLVAVGGKVSLPLPFHLLGGRVELGRGRLCRVQGRRCPQDGARVV
LRDFAGAIFEQLWQGSQQQQQQQQQKEDGNSSATATTHFLLNILQHNLSI
PSVANTDHPLILRALHHLLGTYQPLPLLPLPPYPLSVCIHNTNNNFNSGP
VRSSSPSSLPSLLHGPALLLIPCLSRPDTDKQAMAFRSICIGPLPPSLPH
PRSRPLI*
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mRNA from alignment at scaffold_11:592009..593108+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5796 ID=mRNA_5796|Name=jgi.p|Nanoce1779_2|37642|organism=Nannochloropsis oceanica|type=mRNA|length=1100bp|location=Sequence derived from alignment at scaffold_11:592009..593108+ (Nannochloropsis oceanica)
AAGGGGGAAGGGAGGGGAAAAGTGAGAGGAGAGAGTTGGGAGTGCGTGCG
GTAGCTTGTAAGTTGTTGCTGCGGTTGGTAGATGTTATCCTCTTCCACCA
GAGCGAGCGGTGGTTGTACAGCGATTATACGAAGCCGTCTTGGTGGGAGT
AAGCTCGGTGATGAAAGGACAGGACGAGCTATTATTTCATGCGTTTGCTT
CGTTTGTGGCCGAGTTGTGCACGCGGGAAGCGGAGGTATTGGGACGAGGC
TTGAACATGCAGATGGTGGAGTTGATGCTAGGGATGGCGGGTTGTTAAAA
CGTGCAGTTTCGACGTTGGCGTTGGAGTTCTGGGAGGTTTTGATGGAGGT
ACCTGTTGTTGAACGCGATCCTCTCTTGAGAGAACATTTATGTCTGCGGC
TGGTTGCCGTTGGTGGAAAGGTTAGCCTACCCCTCCCGTTTCACCTCTTG
GGAGGACGCGTTGAACTTGGAAGAGGAAGACTTTGTCGGGTACAGGGAAG
GAGATGCCCTCAAGACGGTGCTCGAGTCGTGCTACGCGATTTTGCGGGTG
CAATTTTCGAGCAGCTCTGGCAAGGTTCACAGCAGCAGCAGCAGCAGCAG
CAGCAAAAGGAGGATGGGAATTCATCAGCAACCGCAACCACACATTTTCT
TCTTAATATTCTTCAGCATAATCTTTCCATTCCCAGCGTAGCCAACACCG
ATCACCCCCTCATCCTCCGTGCCCTCCACCATCTCCTGGGCACCTATCAA
CCCCTCCCCCTCCTCCCCCTCCCTCCCTATCCTTTATCTGTCTGCATTCA
CAACACCAACAACAATTTTAACTCTGGCCCCGTTCGCTCCTCCTCACCTT
CCTCCCTCCCGTCACTCCTCCACGGTCCCGCGCTCCTCCTCATTCCTTGT
CTCTCTCGCCCCGACACCGACAAGCAAGCTATGGCCTTCCGCTCCATCTG
CATCGGCCCCCTCCCTCCTTCCCTCCCCCATCCTCGCTCCAGGCCACTGA
TTTAATCCTGACTGGGATCAGACATGCGGAGGAGGGGAAGTGTGAGATGG
CTGCGAAACTCCTACTCATTGAATCCATCGTTAGAACTATCCTATCCGTA
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Coding sequence (CDS) from alignment at scaffold_11:592009..593108+

>mRNA_5796 ID=mRNA_5796|Name=jgi.p|Nanoce1779_2|37642|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_11:592009..593108+ (Nannochloropsis oceanica)
ATGTTATCCTCTTCCACCAGAGCGAGCGGTGGTTGTACAGCGATTATACG
AAGCCGTCTTGGTGGGAGTAAGCTCGGTGATGAAAGGACAGGACGAGCTA
TTATTTCATGCGTTTGCTTCGTTTGTGGCCGAGTTGTGCACGCGGGAAGC
GGAGGTATTGGGACGAGGCTTGAACATGCAGATGGTGGAGTTGATGCTAG
GGATGGCGGGTTGTTAAAACGTGCAGTTTCGACGTTGGCGTTGGAGTTCT
GGGAGGTTTTGATGGAGGTACCTGTTGTTGAACGCGATCCTCTCTTGAGA
GAACATTTATGTCTGCGGCTGGTTGCCGTTGGTGGAAAGGTTAGCCTACC
CCTCCCGTTTCACCTCTTGGGAGGACGCGTTGAACTTGGAAGAGGAAGAC
TTTGTCGGGTACAGGGAAGGAGATGCCCTCAAGACGGTGCTCGAGTCGTG
CTACGCGATTTTGCGGGTGCAATTTTCGAGCAGCTCTGGCAAGGTTCACA
GCAGCAGCAGCAGCAGCAGCAGCAAAAGGAGGATGGGAATTCATCAGCAA
CCGCAACCACACATTTTCTTCTTAATATTCTTCAGCATAATCTTTCCATT
CCCAGCGTAGCCAACACCGATCACCCCCTCATCCTCCGTGCCCTCCACCA
TCTCCTGGGCACCTATCAACCCCTCCCCCTCCTCCCCCTCCCTCCCTATC
CTTTATCTGTCTGCATTCACAACACCAACAACAATTTTAACTCTGGCCCC
GTTCGCTCCTCCTCACCTTCCTCCCTCCCGTCACTCCTCCACGGTCCCGC
GCTCCTCCTCATTCCTTGTCTCTCTCGCCCCGACACCGACAAGCAAGCTA
TGGCCTTCCGCTCCATCTGCATCGGCCCCCTCCCTCCTTCCCTCCCCCAT
CCTCGCTCCAGGCCACTGATTTAA
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Synonyms
Publications