jgi.p|Nanoce1779_2|589646, mRNA_5594 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589646
Unique NamemRNA_5594
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length827
Alignment locationscaffold_11:29188..30765 -

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Properties
Property NameValue
TranscriptId589732
TrackFilteredModels2
ProteinId589646
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:29188..30765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589646gene_5594Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589646mRNA_5594-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5594CDS_5594Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5594 ID=mRNA_5594|Name=jgi.p|Nanoce1779_2|589646|organism=Nannochloropsis oceanica|type=mRNA|length=827bp
CAGACGCTCCGCGCAGAGATCAATTCTCGACGTTCATAAGGGGGCCAGTA
TTTCACAAAGAAGCCACAGGAAGCTAGACTGAACGCCGAGGAAGCGTGAG
ACGGAGACATACAGGGACATACCCTACTATTGTAGAGACATGAGCGAGCA
GGCCCCAAAAGGAAATGTCAAGAACCCGGCCATCCGCCGCATCCACGCGG
ACATTCGGGAATTGCAAAAAGAGCCGTCAGACCAATACCATGCCGCCCCA
CTGGAGGTAGGAGTTCAAAATTTAAGGAAGATAGACAGGAAGCGGGAGTC
GATGGACGCATGGTTGCTCATCGTCTCTTCTCCTTTTCCTTCCCCCCCTC
CTTCTTTCACCCTCCCTCCCCTTCCCTCCCCTCAAGGAAAACCTATTTGA
GTGGCATTTCACCTTGAGAGGGCCTCCTGCCAGTGACTACTTTAATGGTA
TCTACCACGGGCGCATCCTCCTCCCAGCAGAGTACCCATTCAAACCACCC
AACATAATGCTCATGACGCCCAACGGCCGTTTCGAGGTCGGAAAGAAGAT
CTGCCTCTCCATCTCTGCCCATCATCCAGAGCATTGGCAGCCAGCTTGGG
GGGTACGCCTTATTCTAGAAGCCCTTATTTCTTTCTTTCCCACAGAGCCT
AAGGGGGCCGTCGGGTCCCTCGACTGGACGCCGCGAGAACGACAACGACT
AGCGGTGGAGTCGCAAAGCTGGAGCTGTCCTCGTTGTGGCCCGGCCCAAG
CCCTCCTTCCCCCCCTCATTCACCCCAGCAGCAGCCCTTCTATTGAGAAA
GTGGACGAGGAAGGGGGGGAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|589646

>mRNA_5594-protein ID=mRNA_5594-protein|Name=jgi.p|Nanoce1779_2|589646|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MSEQAPKGNVKNPAIRRIHADIRELQKEPSDQYHAAPLEVGVQNLRKIDR
KRESMDAWLLIVSSPFPSPPPSFTLPPLPSPQGKPI*
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mRNA from alignment at scaffold_11:29188..30765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5594 ID=mRNA_5594|Name=jgi.p|Nanoce1779_2|589646|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp|location=Sequence derived from alignment at scaffold_11:29188..30765- (Nannochloropsis oceanica)
CAGACGCTCCGCGCAGAGATCAATTCTCGACGTTCATAAGGGGGCCAGTA
TTTCACAAAGAAGCCACAGGAAGCTAGACTGAACGCCGAGGAAGCGTGAG
ACGGAGACATACAGGGACATACCCTACTATTGTAGAGACATGAGCGAGCA
GGCCCCAAAAGGAAATGTCAAGAACCCGGCCATCCGCCGCATCCACGCGG
TGAGTGAATGTACACAGCAAATGACGGAGGAGAAGTGTATGTCCATTTTT
TGTCAAGGCAATAGGAAGGCTCAAGCGAAGGACTTCTCGCTCACACCCCT
CCCTCCCATTCCCACCCCCCGCATGGGTGTACAGGACATTCGGGAATTGC
AAAAAGAGCCGTCAGACCAATACCATGCCGCCCCACTGGAGGTAGGAGTT
CAAAATTTAAGGAAGATAGACAGGAAGCGGGAGTCGATGGACGCATGGTT
GCTCATCGTCTCTTCTCCTTTTCCTTCCCCCCCTCCTTCTTTCACCCTCC
CTCCCCTTCCCTCCCCTCAAGGAAAACCTATTTGAGTGGCATTTCACCTT
GAGAGGGCCTCCTGCCAGTGACTACTTTAATGGTATCTACCACGGGCGCA
TCCTCCTCCCAGCAGAGTACCCATTCAAACCACCCAACATAATGCTCATG
ACGGTAAATGAAAGCCCCTCCCTCCCTCCCTCCTTCCTTCCCTCCCTCTC
CTTGCCTCCATCCATACCCACGCATTTAATAAGCGCGCCCACCCGCTTTC
TATTCCATGGCCCGCTGCCGTTTGGCAATTAAGCCTCCTCTACCCATCTC
ACCCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTTCCTCTCTCCCTC
CCTCCCTCTCTCTCCCCCTCCAGCCCAACGGCCGTTTCGAGGTCGGAAAG
AAGATCTGCCTCTCCATCTCTGCCCATCATCCAGAGCATTGGCAGCCAGC
TTGGGGGGGTGAGTGGATGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGG
GGGAGCATCCCTTGTAGCAGTAGCAGTGACAACACTGATTTGTCATGACT
CACCTTCAACTTCCTCCCTCCCGCCTTCCGTCCCTCCTTCGAGTCTTCCT
CTTCCTCTTTACTGAAGTTCTACTTTTCCCCCACCCCACTGAGTCAGATG
ACACCTACTCCGCCTCACCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCG
CGCAGTACGCCTTATTCTAGAAGCCCTTATTTCTTTCTTTCCCACAGAGC
CTAAGGGGGCCGTCGGGTCCCTCGACTGGACGCCGCGAGAACGACAACGA
CTAGCGGTGGAGGTAGGGGGGGGGGGGGGGGGGAGGAGGGAGGGACGGCT
GGTCGACACATAAAAGGCCGAATACCTTGTCCGCGGGTTTGTCGTCATCG
TCTCACATGTCCCTCTCTTTCTTGCCACTTTCCTCCCTCCTATCATTGAC
ACCATTATAAGTCGCAAAGCTGGAGCTGTCCTCGTTGTGGCCCGGCCCAA
GCCCTCCTTCCCCCCCTCATTCACCCCAGCAGCAGCCCTTCTATTGAGAA
AGTGGACGAGGAAGGGGGGGAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_11:29188..30765-

>mRNA_5594 ID=mRNA_5594|Name=jgi.p|Nanoce1779_2|589646|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_11:29188..30765- (Nannochloropsis oceanica)
GACATTCGGGAATTGCAAAAAGAGCCGTCAGACCAATACCATGCCGCCCC
ACTGGAGGTAGGAGTTCAAAATTTAAGGAAGATAGACAGGAAGCGGGAGT
CGATGGACGCATGGTTGCTCATCGTCTCTTCTCCTTTTCCTTCCCCCCCT
CCTTCTTTCACCCTCCCTCCCCTTCCCTCCCCTCAAGGAAAACCTATTTG
AATGAGCGAGCAGGCCCCAAAAGGAAATGTCAAGAACCCGGCCATCCGCC
GCATCCACGCGGACATTCGGGAATTGCAAAAAGAGCCGTCAGACCAATAC
CATGCCGCCCCACTGGAGGTAGGAGTTCAAAATTTAAGGAAGATAGACAG
GAAGCGGGAGTCGATGGACGCATGGTTGCTCATCGTCTCTTCTCCTTTTC
CTTCCCCCCCTCCTTCTTTCACCCTCCCTCCCCTTCCCTCCCCTCAAGGA
AAACCTATTTGAATGAGCGAGCAGGCCCCAAAAGGAAATGTCAAGAACCC
GGCCATCCGCCGCATCCACGCG
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Synonyms
Publications