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Properties
| Property Name | Value |
|---|
| TranscriptId | 590099 |
| Track | FilteredModels2 |
| ProteinId | 590013 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:337665..340057 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5692 ID=mRNA_5692|Name=jgi.p|Nanoce1779_2|590013|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp
ACAGGAGGCAGCGGGACACAGCTCCTTACCACACTTACACCTCTCCACAC
TCCGTCATCTTAAGAATGGGCAAGCCTCAGCGACCCAAGGGACCGGAGGT
GGGCCTCGTCTTCCCTACGGACAAGAAGGGTGGCCGTGGCTCCACGTTCG
GCAACAAAGGCGCTTGGGCCGCAGCCGTCGCGGCTGTCGACCCCGCGGAG
GGCACAAAGGTGGAGAAGGAAAAAAGCTGGCGCCAGAAATATACCAAGTA
CATCGTTCGTCAAGTGCAACTCGGACTTAATTCCCCCAAGAACGCTGTCA
GCATCGCGCAGGGCGGCCTGGACTACTGCTACAAAAACTTTGAATTCATC
CGAGATGGAAAGACCTACAAGCTGGGGGAGGCGCTGGAGAAATTTGGGGG
GTCGCATGCCTTTGAAACGGGGGTGATTGAAGGGGACGGGAAGCTGCCCA
AGTTTGGCCCGGAGTGCCAGGTGCCATACGGGAAGAAGGTCTTGAAGGGG
GAGGCGTTGAAGGCGCAGTTGGACAAATGGGCGAGCTACGGGACCATCGA
GCCGTCAGCCAGGGACGCAATCACGTACTTGGTGGACAACCCCAAGGTGC
TGGATCTGTCGGACAAATACTTTGTCTTGCTGGGGGCGGGGTCGGCCATG
GGGCCCCTCCTCACTCTCCTCTCCCTAGGTGCGAACATAATTGCGATTGA
TCTGGACAGGCAAGGTATTTGGGAGAGGCTGATCCGAGAGACTCGAAACT
CGCCGGGGACGTTGATTTTCCCGCTGAAGAAGAAGCAGTCGACCTTGAAA
AGCGATGCGGAGATTGCGGCCCAAGCGGGAGGGAACTTGTTCACAGACAC
CCCGGAGATTCGTGCGTGGCTGATGGGGGTGGAGAGGGGAAAGGATCTGG
TGGTGGGGGCGTATGCCTACCTAGACGGGGAGTTGCACGTGAAGGTGTCT
CTGGCCATGGACGCAATTATCCGGGATTTGACCAAGATGAGGAAGGCCAC
GCCCGCTTACCTCTGCACACCGACTGACGTCCACGTCATTACCAAGGAGG
CCCACGACGCGGCGGCGAAGGAGTACAAGAAGATTAACTTCACCAATGTC
GTCTCGAGGTTGAGCCCTTTTGCTCTGCCTGGTACCGGGTACCTGGTCAA
GAACGCCTTAGACCCTGTCAAGGCAGAGGACGGCGAGGAACTCTACCTTG
TCGACGGGATCGTGGGAAGACAAGGACCGAACTACGCCCTGGCGAAGCGG
ATTCAGCACTGGCGGGCGGTGGTGGCTCGGGAGGTGGATAAGGTCAATGT
GTCCTCCAACATAGCGCCGTCCACGGCCACCGTGTCGGTGACGAGCAACA
AGCTATTCGCCTTGGCCTACAAGGGATTCCACTTCTTTGCCCCGCTGGAG
GTGTTCCAACAGGAGACGTCCAACGCCGTCATGGCCGCCATGCTGATCCA
CGATATTCGCAACCCCAAGGTGCCTTCCAACCCCAAGAACAAGCTCCGCA
ATCCGCTCGAGCTGTTTACGTATGGATCTCTCCATGGCGGGGTCTGGCGC
ATGGCTTACAAGATTGACTCGATCGGCGAGCCCGCGGCGTTTTTGTACTT
GTTCACCACACCCTTGGGAATGATGATTGTGGTGGCTTTCTGGGCGATAG
TATTGGGTATCATCAAGGGATACGCTGGGTTTTAGGGAAAGGCAGGAGGG
AGGTAGAGAGGCAAGGAGGGAAGGAGGGAGGGAGAGAGAGGTCTTTGTAT
GATGTTTTGAGTGAGTCCTTGTTTATCAGTATCGAGTGTGTGAGGCGAGG
CACCACATTCTTTTCTCACTTCTTTCCTTTATAGTGCTTTCATTCGGCAG
AAAAGAGTGACAGAGTGGAGAGGAAGCATGTACACCCCCATCAACGAAAA
AAAGAGATGGGCAGAGGCGATGTTTGTCTAGCATTGTATTCTCGATTCGG
TTTCCTACTTTCATTTGAGCTCACACACAGCTGCTGCTATCGCATGCAGA
CAGTGTCGTGCCTAAGAAAAAGGGCGAGGAACACCCAACACTTACTTACT
TTATGTATACCATGGAAAGACAGTAACTCAAAAAAAGGAGCGGGGGAAGA
AGAGGTATGTTCGTAGAAAATACAGCCGACGGAGACAAGGAGCATCAGAT
GCAGCTTAGAAAAAGCAGGAACATAACACGCTGAGTTCAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|590013 >mRNA_5692-protein ID=mRNA_5692-protein|Name=jgi.p|Nanoce1779_2|590013|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MGKPQRPKGPEVGLVFPTDKKGGRGSTFGNKGAWAAAVAAVDPAEGTKVE
KEKSWRQKYTKYIVRQVQLGLNSPKNAVSIAQGGLDYCYKNFEFIRDGKT
YKLGEALEKFGGSHAFETGVIEGDGKLPKFGPECQVPYGKKVLKGEALKA
QLDKWASYGTIEPSARDAITYLVDNPKVLDLSDKYFVLLGAGSAMGPLLT
LLSLGANIIAIDLDRQGIWERLIRETRNSPGTLIFPLKKKQSTLKSDAEI
AAQAGGNLFTDTPEIRAWLMGVERGKDLVVGAYAYLDGELHVKVSLAMDA
IIRDLTKMRKATPAYLCTPTDVHVITKEAHDAAAKEYKKINFTNVVSRLS
PFALPGTGYLVKNALDPVKAEDGEELYLVDGIVGRQGPNYALAKRIQHWR
AVVAREVDKVNVSSNIAPSTATVSVTSNKLFALAYKGFHFFAPLEVFQQE
TSNAVMAAMLIHDIRNPKVPSNPKNKLRNPLELFTYGSLHGGVWRMAYKI
DSIGEPAAFLYLFTTPLGMMIVVAFWAIVLGIIKGYAGF* back to topmRNA from alignment at scaffold_11:337665..340057+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5692 ID=mRNA_5692|Name=jgi.p|Nanoce1779_2|590013|organism=Nannochloropsis oceanica|type=mRNA|length=2393bp|location=Sequence derived from alignment at scaffold_11:337665..340057+ (Nannochloropsis oceanica)
ACAGGAGGCAGCGGGACACAGCTCCTTACCACACTTACACCTCTCCACAC
TCCGTCATCTTAAGAATGGGCAAGCCTCAGCGACCCAAGGGACCGGAGGT
GGGCCTCGTCTTCCCTACGGACAAGAAGGGTGGCCGGTACGTATAAGGGA
ACGGGATACAAAGAGGGGAGGGAAGGAGGGAGAGCTCGAGGATCCTGATT
ACGCGGTAGGCCCGCTCCCGTGTGCGTGCATGCGTGCGCATGGTCCTAAT
GCTGCCGATGGAGGGCATTGGGTCATTGGTCCGCACGATGAAAATTGCGG
AAGAGTGACCCCTGATTCCTTCATCCCCTAACAACAGTGGCTCCACGTTC
GGCAACAAAGGCGCTTGGGCCGCAGCCGTCGCGGCTGTCGACCCCGCGGA
GGGCACAAAGGTGGAGAAGGAAAAAAGCTGGCGCCAGAAATATACCAAGT
ACATCGTTCGTCAAGTGCAACTCGGACTTAATTCCCCCAAGAACGCTGTC
AGCATCGCGCAGGGCGGCCTGGACTACTGCTACAAAAACTTTGAATTCAT
CCGAGATGGAAAGACCTACAAGCTGGGGGAGGCGCTGGAGAAATTTGGGG
GGTCGCATGCCTTTGAAACGGGGGTGATTGAAGGGGACGGGAAGCTGCCC
AAGTTTGGCCCGGAGTGCCAGGTGCCATACGGGAAGAAGGTCTTGAAGGG
GGAGGCGTTGAAGGCGCAGTTGGACAAATGGGCGAGCTACGGGACCATCG
AGCCGTCAGCCAGGGACGCAATCACGTACTTGGTGGACAACCCCAAGGTG
CTGGATCTGTCGGACAAATACTTTGTCTTGCTGGGGGCGGGGTCGGCCAT
GGGGCCCCTCCTCACTCTCCTCTCCCTAGGTGCGAACATAATTGCGATTG
ATCTGGACAGGCAAGGTATTTGGGAGAGGCTGATCCGAGAGACTCGAAAC
TCGCCGGGGACGTTGATTTTCCCGCTGAAGAAGAAGCAGTCGACCTTGAA
AAGCGATGCGGAGATTGCGGCCCAAGCGGGAGGGAACTTGTTCACAGACA
CCCCGGAGATTCGTGCGTGGCTGATGGGGGTGGAGAGGGGAAAGGATCTG
GTGGTGGGGGCGTATGCCTACCTAGACGGGGAGTTGCACGTGAAGGTGTC
TCTGGCCATGGACGCAATTATCCGGGATTTGACCAAGATGAGGAAGGCCA
CGCCCGCTTACCTCTGCACACCGACTGACGTCCACGTCATTACCAAGGAG
GCCCACGACGCGGCGGCGAAGGAGTACAAGAAGATTAACTTCACCAATGT
CGTCTCGAGGTTGAGCCCTTTTGCTCTGCCTGGTACCGGGTACCTGGTCA
AGAACGCCTTAGACCCTGTCAAGGCAGAGGACGGCGAGGAACTCTACCTT
GTCGACGGGATCGTGGGAAGACAAGGACCGAACTACGCCCTGGCGAAGCG
GATTCAGCACTGGCGGGCGGTGGTGGCTCGGGAGGTGGATAAGGTCAATG
TGTCCTCCAACATAGCGCCGTCCACGGCCACCGTGTCGGTGACGAGCAAC
AAGCTATTCGCCTTGGCCTACAAGGGATTCCACTTCTTTGCCCCGCTGGA
GGTGTTCCAACAGGAGACGTCCAACGCCGTCATGGCCGCCATGCTGATCC
ACGATATTCGCAACCCCAAGGTGCCTTCCAACCCCAAGAACAAGCTCCGC
AATCCGCTCGAGCTGTTTACGTATGGATCTCTCCATGGCGGGGTCTGGCG
CATGGCTTACAAGATTGACTCGATCGGCGAGCCCGCGGCGTTTTTGTACT
TGTTCACCACACCCTTGGGAATGATGATTGTGGTGGCTTTCTGGGCGATA
GTATTGGGTATCATCAAGGGATACGCTGGGTTTTAGGGAAAGGCAGGAGG
GAGGTAGAGAGGCAAGGAGGGAAGGAGGGAGGGAGAGAGAGGTCTTTGTA
TGATGTTTTGAGTGAGTCCTTGTTTATCAGTATCGAGTGTGTGAGGCGAG
GCACCACATTCTTTTCTCACTTCTTTCCTTTATAGTGCTTTCATTCGGCA
GAAAAGAGTGACAGAGTGGAGAGGAAGCATGTACACCCCCATCAACGAAA
AAAAGAGATGGGCAGAGGCGATGTTTGTCTAGCATTGTATTCTCGATTCG
GTTTCCTACTTTCATTTGAGCTCACACACAGCTGCTGCTATCGCATGCAG
ACAGTGTCGTGCCTAAGAAAAAGGGCGAGGAACACCCAACACTTACTTAC
TTTATGTATACCATGGAAAGACAGTAACTCAAAAAAAGGAGCGGGGGAAG
AAGAGGTATGTTCGTAGAAAATACAGCCGACGGAGACAAGGAGCATCAGA
TGCAGCTTAGAAAAAGCAGGAACATAACACGCTGAGTTCAAAA back to topCoding sequence (CDS) from alignment at scaffold_11:337665..340057+ >mRNA_5692 ID=mRNA_5692|Name=jgi.p|Nanoce1779_2|590013|organism=Nannochloropsis oceanica|type=CDS|length=3240bp|location=Sequence derived from alignment at scaffold_11:337665..340057+ (Nannochloropsis oceanica)
ATGGGCAAGCCTCAGCGACCCAAGGGACCGGAGGTGGGCCTCGTCTTCCC
TACGGACAAGAAGGGTGGCCGTGGCTCCACGTTCGGCAACAAAGGCGCTT
GGGCCGCAGCCGTCGCGGCTGTCGACCCCGCGGAGGGCACAAAGGTGGAG
AAGGAAAAAAGCTGGCGCCAGAAATATACCAAGTACATCGTTCGTCAAGT
GCAACTCGGACTTAATTCCCCCAAGAACGCTGTCAGCATCGCGCAGGGCG
GCCTGGACTACTGCTACAAAAACTTTGAATTCATCCGAGATGGAAAGACC
TACAAGCTGGGGGAGGCGCTGGAGAAATTTGGGGGGTCGCATGCCTTTGA
AACGGGGGTGATTGAAGGGGACGGGAAGCTGCCCAAGTTTGGCCCGGAGT
GCCAGGTGCCATACGGGAAGAAGGTCTTGAAGGGGGAGGCGTTGAAGGCG
CAGTTGGACAAATGGGCGAGCTACGGGACCATCGAGCCGTCAGCCAGGGA
CGCAATCACGTACTTGGTGGACAACCCCAAGGTGCTGGATCTGTCGGACA
AATACTTTGTCTTGCTGGGGGCGGGGTCGGCCATGGGGCCCCTCCTCACT
CTCCTCTCCCTAGGTGCGAACATAATTGCGATTGATCTGGACAGGCAAGG
TATTTGGGAGAGGCTGATCCGAGAGACTCGAAACTCGCCGGGGACGTTGA
TTTTCCCGCTGAAGAAGAAGCAGTCGACCTTGAAAAGCGATGCGGAGATT
GCGGCCCAAGCGGGAGGGAACTTGTTCACAGACACCCCGGAGATTCGTGC
GTGGCTGATGGGGGTGGAGAGGGGAAAGGATCTGGTGGTGGGGGCGTATG
CCTACCTAGACGGGGAGTTGCACGTGAAGGTGTCTCTGGCCATGGACGCA
ATTATCCGGGATTTGACCAAGATGAGGAAGGCCACGCCCGCTTACCTCTG
CACACCGACTGACGTCCACGTCATTACCAAGGAGGCCCACGACGCGGCGG
CGAAGGAGTACAAGAAGATTAACTTCACCAATGTCGTCTCGAGGTTGAGC
CCTTTTGCTCTGCCTGGTACCGGGTACCTGGTCAAGAACGCCTTAGACCC
TGTCAAGGCAGAGGACGGCGAGGAACTCTACCTTGTCGACGGGATCGTGG
GAAGACAAGGACCGAACTACGCCCTGGCGAAGCGGATTCAGCACTGGCGG
GCGGTGGTGGCTCGGGAGGTGGATAAGGTCAATGTGTCCTCCAACATAGC
GCCGTCCACGGCCACCGTGTCGGTGACGAGCAACAAGCTATTCGCCTTGG
CCTACAAGGGATTCCACTTCTTTGCCCCGCTGGAGGTGTTCCAACAGGAG
ACGTCCAACGCCGTCATGGCCGCCATGCTGATCCACGATATTCGCAACCC
CAAGGTGCCTTCCAACCCCAAGAACAAGCTCCGCAATCCGCTCGAGCTGT
TTACGTATGGATCTCTCCATGGCGGGGTCTGGCGCATGGCTTACAAGATT
GACTCGATCGGCGAGCCCGCGGCGTTTTTGTACTTGTTCACCACACCCTT
GGGAATGATGATTGTGGTGGCTTTCTGGGCGATAGTATTGGGTATCATCA
AGGGATACGCTGGGTTTTAGATGGGCAAGCCTCAGCGACCCAAGGGACCG
GAGGTGGGCCTCGTCTTCCCTACGGACAAGAAGGGTGGCCGTGGCTCCAC
GTTCGGCAACAAAGGCGCTTGGGCCGCAGCCGTCGCGGCTGTCGACCCCG
CGGAGGGCACAAAGGTGGAGAAGGAAAAAAGCTGGCGCCAGAAATATACC
AAGTACATCGTTCGTCAAGTGCAACTCGGACTTAATTCCCCCAAGAACGC
TGTCAGCATCGCGCAGGGCGGCCTGGACTACTGCTACAAAAACTTTGAAT
TCATCCGAGATGGAAAGACCTACAAGCTGGGGGAGGCGCTGGAGAAATTT
GGGGGGTCGCATGCCTTTGAAACGGGGGTGATTGAAGGGGACGGGAAGCT
GCCCAAGTTTGGCCCGGAGTGCCAGGTGCCATACGGGAAGAAGGTCTTGA
AGGGGGAGGCGTTGAAGGCGCAGTTGGACAAATGGGCGAGCTACGGGACC
ATCGAGCCGTCAGCCAGGGACGCAATCACGTACTTGGTGGACAACCCCAA
GGTGCTGGATCTGTCGGACAAATACTTTGTCTTGCTGGGGGCGGGGTCGG
CCATGGGGCCCCTCCTCACTCTCCTCTCCCTAGGTGCGAACATAATTGCG
ATTGATCTGGACAGGCAAGGTATTTGGGAGAGGCTGATCCGAGAGACTCG
AAACTCGCCGGGGACGTTGATTTTCCCGCTGAAGAAGAAGCAGTCGACCT
TGAAAAGCGATGCGGAGATTGCGGCCCAAGCGGGAGGGAACTTGTTCACA
GACACCCCGGAGATTCGTGCGTGGCTGATGGGGGTGGAGAGGGGAAAGGA
TCTGGTGGTGGGGGCGTATGCCTACCTAGACGGGGAGTTGCACGTGAAGG
TGTCTCTGGCCATGGACGCAATTATCCGGGATTTGACCAAGATGAGGAAG
GCCACGCCCGCTTACCTCTGCACACCGACTGACGTCCACGTCATTACCAA
GGAGGCCCACGACGCGGCGGCGAAGGAGTACAAGAAGATTAACTTCACCA
ATGTCGTCTCGAGGTTGAGCCCTTTTGCTCTGCCTGGTACCGGGTACCTG
GTCAAGAACGCCTTAGACCCTGTCAAGGCAGAGGACGGCGAGGAACTCTA
CCTTGTCGACGGGATCGTGGGAAGACAAGGACCGAACTACGCCCTGGCGA
AGCGGATTCAGCACTGGCGGGCGGTGGTGGCTCGGGAGGTGGATAAGGTC
AATGTGTCCTCCAACATAGCGCCGTCCACGGCCACCGTGTCGGTGACGAG
CAACAAGCTATTCGCCTTGGCCTACAAGGGATTCCACTTCTTTGCCCCGC
TGGAGGTGTTCCAACAGGAGACGTCCAACGCCGTCATGGCCGCCATGCTG
ATCCACGATATTCGCAACCCCAAGGTGCCTTCCAACCCCAAGAACAAGCT
CCGCAATCCGCTCGAGCTGTTTACGTATGGATCTCTCCATGGCGGGGTCT
GGCGCATGGCTTACAAGATTGACTCGATCGGCGAGCCCGCGGCGTTTTTG
TACTTGTTCACCACACCCTTGGGAATGATGATTGTGGTGGCTTTCTGGGC
GATAGTATTGGGTATCATCAAGGGATACGCTGGGTTTTAG back to top
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