Properties
| Property Name | Value |
|---|
| TranscriptId | 590405 |
| Track | FilteredModels2 |
| ProteinId | 590319 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:576662..578160 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5790 ID=mRNA_5790|Name=jgi.p|Nanoce1779_2|590319|organism=Nannochloropsis oceanica|type=mRNA|length=1071bp
AGGCCAGCACGTTCAGTGCTGCAGCTGACCAAACGCACGAGAGCTCGACC
TCCCGTCCCCATCTCCCTCCATCCACCGAACGTGGAAATTCTCCGCCTGC
GATCGACGACCTCCCAACCATGAGCTTATCTATATTTACGACAAACGGTA
CAACTGAAATTGAGCATAGCCAAAAGCTACACCCGTCGCTCGAGCATGGC
AAGGCCTACCTTGACGCATTGCCGTACATTGACGGGGAAATAGACCCTGA
GATGCGGGAACACGTGGACAGGCTTATTTTGGAGGAGATGCAGAACCCTC
GCTTCCCGACAAGAAATTATTTGGCCGATCTTCCGGTGCCCCAGGTAACG
TTTGAAAAGAGTTTTTTCATTCGCACGGAACTGGAGCGCGTGGCGGCGGG
CAAGCCAATGGCACCTTTTGATGAGTCGAGATATGCGGGCAAGAAACCGG
ATCCCCAGCTCCAGGGCGACCTGCAGGCTTGGCGGGCCGCGTTGAACAAT
CTCCGGGCGCAGCAAGAACACCTTGGCAACAGGGTGGTGAATATGGAGTT
ACTTCAATCCTTCGCCCCGGACGTGTGGCTACTGTACAACCGGGAGCTGG
AAGCGTTCAAGGGACGACTGGACAAGGAGCTCGAGGGGCTGCGAAAAGAG
GCGGAGCTGATCAACCTCAGCCGCAAGACGAAGCAAGACGAGCTGGCCCC
TCGACTGGCTAACCTGACGCGGAAGCGAGACGAAACCATGTACACAAATC
TGGAGCTACAAAAAGCATGTGCGATGCTTCGGAGCGAGATCAAACGACTC
AAGGTAGAGGTGGATGCGCATGAGGAGCGGGCAGGCGTTGGACGGGAACA
GGACGAGGGAGAGGAGGAGGAACACGAAGATTTGTAAAACATAACGCACA
TGACAAAGAAATCAAGAAGCAAACGAAATGCAATACATCAATATTGCTAC
GTTCAGTGATTTTTGTCTTTCTCCCTGTGTGAAATGCAGATAGACACACA
AAGACATAAGATACAGTATGGGGTTCGCGCAAAATTATCCAAAAGAAAAA
AAGTGGCTCAACAAAATAGCA back to topprotein sequence of jgi.p|Nanoce1779_2|590319 >mRNA_5790-protein ID=mRNA_5790-protein|Name=jgi.p|Nanoce1779_2|590319|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MSLSIFTTNGTTEIEHSQKLHPSLEHGKAYLDALPYIDGEIDPEMREHVD
RLILEEMQNPRFPTRNYLADLPVPQVTFEKSFFIRTELERVAAGKPMAPF
DESRYAGKKPDPQLQGDLQAWRAALNNLRAQQEHLGNRVVNMELLQSFAP
DVWLLYNRELEAFKGRLDKELEGLRKEAELINLSRKTKQDELAPRLANLT
RKRDETMYTNLELQKACAMLRSEIKRLKVEVDAHEERAGVGREQDEGEEE
EHEDL* back to topmRNA from alignment at scaffold_11:576662..578160- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5790 ID=mRNA_5790|Name=jgi.p|Nanoce1779_2|590319|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp|location=Sequence derived from alignment at scaffold_11:576662..578160- (Nannochloropsis oceanica)
AGGCCAGCACGTTCAGTGCTGCAGCTGACCAAACGCACGAGAGCTCGACC
TCCCGTCCCCATCTCCCTCCATCCACCGAACGTGGAAATTCTCCGCCTGC
GATCGACGACCTCCCAACCATGAGCTTATCTATATTTACGACAAACGGTA
CAACTGAAATTGAGCATAGCCAAAAGCTACACCCGTCGCTCGAGCATGTA
CGTTTGTGGGCGCTGCTCTCGGGAGAGGGAGTACAGGCCCGTCTCATCAT
CATGTCCCGTACTATTTTCTCCTCTACTTCAGGGCAAGGCCTACCTTGAC
GCATTGCCGTACATTGACGGGGAAATAGACCCTGAGATGCGGGAACACGT
GGACAGGCTTATTTTGGAGGAGATGCAGAACCCTCGCTTCCCGACAAGGT
AAGCAGGGTGAGGAAGGGAGAGGCTGGGACTGAACCTCATCAAAAGAGCT
GACCGGAACCATTTACACCATAAACACATTCGTAGAAATTATTTGGCCGA
TCTTCCGGTGCCCCAGGTAACGTTTGAAAAGAGTTTTTTCATTCGCACGG
AACTGGAGCGCGTGGCGGCGGGCAAGCCAATGGCACCTTTTGATGAGTCG
AGGTAAGACATGCGAAGGGCAGAGGCATGAAAGGATGCGCTCACCCAGCT
GATAGTTGTCGCCCCTCTCTATCACTAGATATGCGGGCAAGAAACCGGAT
CCCCAGCTCCAGGGCGACCTGCAGGCTTGGCGGGCCGCGTTGAACAATCT
CCGGGCGCAGCAAGAACACCTTGGCAACAGGTAATTATTGAGAAAACTAC
AGATGGATAGAGAGAAATGAACAGAAACAACAACACCACTCTTACGCGGT
CCCTTTTCTATCGTATGACCAAGGGTGGTGAATATGGAGTTACTTCAATC
CTTCGCCCCGGACGTGTGGCTACTGTACAACCGGGAGCTGGAAGCGTTCA
AGGGACGACTGGACAAGGAGCTCGAGGGGCTGCGAAAAGAGGCGGAGCTG
GTACGTTTCATGCAGTTGTGAAATAAAAGACTTGGATGATTGTCTCCATC
TTTTAGCTAATTTCTCTCCTTCCAATGTGATAAATAGATCAACCTCAGCC
GCAAGACGAAGCAAGACGAGCTGGCCCCTCGACTGGCTAACCTGACGCGG
AAGCGAGACGAAACCATGTACACAAATCTGGAGCTACAAAAAGCATGTGC
GATGCTTCGGAGCGAGATCAAACGACTCAAGGTAGAGGTGGATGCGCATG
AGGAGCGGGCAGGCGTTGGACGGGAACAGGACGAGGGAGAGGAGGAGGAA
CACGAAGATTTGTAAAACATAACGCACATGACAAAGAAATCAAGAAGCAA
ACGAAATGCAATACATCAATATTGCTACGTTCAGTGATTTTTGTCTTTCT
CCCTGTGTGAAATGCAGATAGACACACAAAGACATAAGATACAGTATGGG
GTTCGCGCAAAATTATCCAAAAGAAAAAAAGTGGCTCAACAAAATAGCA back to topCoding sequence (CDS) from alignment at scaffold_11:576662..578160- >mRNA_5790 ID=mRNA_5790|Name=jgi.p|Nanoce1779_2|590319|organism=Nannochloropsis oceanica|type=CDS|length=4608bp|location=Sequence derived from alignment at scaffold_11:576662..578160- (Nannochloropsis oceanica)
ATCAACCTCAGCCGCAAGACGAAGCAAGACGAGCTGGCCCCTCGACTGGC
TAACCTGACGCGGAAGCGAGACGAAACCATGTACACAAATCTGGAGCTAC
AAAAAGCATGTGCGATGCTTCGGAGCGAGATCAAACGACTCAAGGTAGAG
GTGGATGCGCATGAGGAGCGGGCAGGCGTTGGACGGGAACAGGACGAGGG
AGAGGAGGAGGAACACGAAGATTTGTAAGGTGGTGAATATGGAGTTACTT
CAATCCTTCGCCCCGGACGTGTGGCTACTGTACAACCGGGAGCTGGAAGC
GTTCAAGGGACGACTGGACAAGGAGCTCGAGGGGCTGCGAAAAGAGGCGG
AGCTGATATGCGGGCAAGAAACCGGATCCCCAGCTCCAGGGCGACCTGCA
GGCTTGGCGGGCCGCGTTGAACAATCTCCGGGCGCAGCAAGAACACCTTG
GCAACAGAAATTATTTGGCCGATCTTCCGGTGCCCCAGGTAACGTTTGAA
AAGAGTTTTTTCATTCGCACGGAACTGGAGCGCGTGGCGGCGGGCAAGCC
AATGGCACCTTTTGATGAGTCGAGGGCAAGGCCTACCTTGACGCATTGCC
GTACATTGACGGGGAAATAGACCCTGAGATGCGGGAACACGTGGACAGGC
TTATTTTGGAGGAGATGCAGAACCCTCGCTTCCCGACAAGATGAGCTTAT
CTATATTTACGACAAACGGTACAACTGAAATTGAGCATAGCCAAAAGCTA
CACCCGTCGCTCGAGCATATCAACCTCAGCCGCAAGACGAAGCAAGACGA
GCTGGCCCCTCGACTGGCTAACCTGACGCGGAAGCGAGACGAAACCATGT
ACACAAATCTGGAGCTACAAAAAGCATGTGCGATGCTTCGGAGCGAGATC
AAACGACTCAAGGTAGAGGTGGATGCGCATGAGGAGCGGGCAGGCGTTGG
ACGGGAACAGGACGAGGGAGAGGAGGAGGAACACGAAGATTTGTAAGGTG
GTGAATATGGAGTTACTTCAATCCTTCGCCCCGGACGTGTGGCTACTGTA
CAACCGGGAGCTGGAAGCGTTCAAGGGACGACTGGACAAGGAGCTCGAGG
GGCTGCGAAAAGAGGCGGAGCTGATATGCGGGCAAGAAACCGGATCCCCA
GCTCCAGGGCGACCTGCAGGCTTGGCGGGCCGCGTTGAACAATCTCCGGG
CGCAGCAAGAACACCTTGGCAACAGAAATTATTTGGCCGATCTTCCGGTG
CCCCAGGTAACGTTTGAAAAGAGTTTTTTCATTCGCACGGAACTGGAGCG
CGTGGCGGCGGGCAAGCCAATGGCACCTTTTGATGAGTCGAGGGCAAGGC
CTACCTTGACGCATTGCCGTACATTGACGGGGAAATAGACCCTGAGATGC
GGGAACACGTGGACAGGCTTATTTTGGAGGAGATGCAGAACCCTCGCTTC
CCGACAAGATGAGCTTATCTATATTTACGACAAACGGTACAACTGAAATT
GAGCATAGCCAAAAGCTACACCCGTCGCTCGAGCATATCAACCTCAGCCG
CAAGACGAAGCAAGACGAGCTGGCCCCTCGACTGGCTAACCTGACGCGGA
AGCGAGACGAAACCATGTACACAAATCTGGAGCTACAAAAAGCATGTGCG
ATGCTTCGGAGCGAGATCAAACGACTCAAGGTAGAGGTGGATGCGCATGA
GGAGCGGGCAGGCGTTGGACGGGAACAGGACGAGGGAGAGGAGGAGGAAC
ACGAAGATTTGTAAGGTGGTGAATATGGAGTTACTTCAATCCTTCGCCCC
GGACGTGTGGCTACTGTACAACCGGGAGCTGGAAGCGTTCAAGGGACGAC
TGGACAAGGAGCTCGAGGGGCTGCGAAAAGAGGCGGAGCTGATATGCGGG
CAAGAAACCGGATCCCCAGCTCCAGGGCGACCTGCAGGCTTGGCGGGCCG
CGTTGAACAATCTCCGGGCGCAGCAAGAACACCTTGGCAACAGAAATTAT
TTGGCCGATCTTCCGGTGCCCCAGGTAACGTTTGAAAAGAGTTTTTTCAT
TCGCACGGAACTGGAGCGCGTGGCGGCGGGCAAGCCAATGGCACCTTTTG
ATGAGTCGAGGGCAAGGCCTACCTTGACGCATTGCCGTACATTGACGGGG
AAATAGACCCTGAGATGCGGGAACACGTGGACAGGCTTATTTTGGAGGAG
ATGCAGAACCCTCGCTTCCCGACAAGATGAGCTTATCTATATTTACGACA
AACGGTACAACTGAAATTGAGCATAGCCAAAAGCTACACCCGTCGCTCGA
GCATATCAACCTCAGCCGCAAGACGAAGCAAGACGAGCTGGCCCCTCGAC
TGGCTAACCTGACGCGGAAGCGAGACGAAACCATGTACACAAATCTGGAG
CTACAAAAAGCATGTGCGATGCTTCGGAGCGAGATCAAACGACTCAAGGT
AGAGGTGGATGCGCATGAGGAGCGGGCAGGCGTTGGACGGGAACAGGACG
AGGGAGAGGAGGAGGAACACGAAGATTTGTAAGGTGGTGAATATGGAGTT
ACTTCAATCCTTCGCCCCGGACGTGTGGCTACTGTACAACCGGGAGCTGG
AAGCGTTCAAGGGACGACTGGACAAGGAGCTCGAGGGGCTGCGAAAAGAG
GCGGAGCTGATATGCGGGCAAGAAACCGGATCCCCAGCTCCAGGGCGACC
TGCAGGCTTGGCGGGCCGCGTTGAACAATCTCCGGGCGCAGCAAGAACAC
CTTGGCAACAGAAATTATTTGGCCGATCTTCCGGTGCCCCAGGTAACGTT
TGAAAAGAGTTTTTTCATTCGCACGGAACTGGAGCGCGTGGCGGCGGGCA
AGCCAATGGCACCTTTTGATGAGTCGAGGGCAAGGCCTACCTTGACGCAT
TGCCGTACATTGACGGGGAAATAGACCCTGAGATGCGGGAACACGTGGAC
AGGCTTATTTTGGAGGAGATGCAGAACCCTCGCTTCCCGACAAGATGAGC
TTATCTATATTTACGACAAACGGTACAACTGAAATTGAGCATAGCCAAAA
GCTACACCCGTCGCTCGAGCATATCAACCTCAGCCGCAAGACGAAGCAAG
ACGAGCTGGCCCCTCGACTGGCTAACCTGACGCGGAAGCGAGACGAAACC
ATGTACACAAATCTGGAGCTACAAAAAGCATGTGCGATGCTTCGGAGCGA
GATCAAACGACTCAAGGTAGAGGTGGATGCGCATGAGGAGCGGGCAGGCG
TTGGACGGGAACAGGACGAGGGAGAGGAGGAGGAACACGAAGATTTGTAA
GGTGGTGAATATGGAGTTACTTCAATCCTTCGCCCCGGACGTGTGGCTAC
TGTACAACCGGGAGCTGGAAGCGTTCAAGGGACGACTGGACAAGGAGCTC
GAGGGGCTGCGAAAAGAGGCGGAGCTGATATGCGGGCAAGAAACCGGATC
CCCAGCTCCAGGGCGACCTGCAGGCTTGGCGGGCCGCGTTGAACAATCTC
CGGGCGCAGCAAGAACACCTTGGCAACAGAAATTATTTGGCCGATCTTCC
GGTGCCCCAGGTAACGTTTGAAAAGAGTTTTTTCATTCGCACGGAACTGG
AGCGCGTGGCGGCGGGCAAGCCAATGGCACCTTTTGATGAGTCGAGGGCA
AGGCCTACCTTGACGCATTGCCGTACATTGACGGGGAAATAGACCCTGAG
ATGCGGGAACACGTGGACAGGCTTATTTTGGAGGAGATGCAGAACCCTCG
CTTCCCGACAAGATGAGCTTATCTATATTTACGACAAACGGTACAACTGA
AATTGAGCATAGCCAAAAGCTACACCCGTCGCTCGAGCATATCAACCTCA
GCCGCAAGACGAAGCAAGACGAGCTGGCCCCTCGACTGGCTAACCTGACG
CGGAAGCGAGACGAAACCATGTACACAAATCTGGAGCTACAAAAAGCATG
TGCGATGCTTCGGAGCGAGATCAAACGACTCAAGGTAGAGGTGGATGCGC
ATGAGGAGCGGGCAGGCGTTGGACGGGAACAGGACGAGGGAGAGGAGGAG
GAACACGAAGATTTGTAAGGTGGTGAATATGGAGTTACTTCAATCCTTCG
CCCCGGACGTGTGGCTACTGTACAACCGGGAGCTGGAAGCGTTCAAGGGA
CGACTGGACAAGGAGCTCGAGGGGCTGCGAAAAGAGGCGGAGCTGATATG
CGGGCAAGAAACCGGATCCCCAGCTCCAGGGCGACCTGCAGGCTTGGCGG
GCCGCGTTGAACAATCTCCGGGCGCAGCAAGAACACCTTGGCAACAGAAA
TTATTTGGCCGATCTTCCGGTGCCCCAGGTAACGTTTGAAAAGAGTTTTT
TCATTCGCACGGAACTGGAGCGCGTGGCGGCGGGCAAGCCAATGGCACCT
TTTGATGAGTCGAGGGCAAGGCCTACCTTGACGCATTGCCGTACATTGAC
GGGGAAATAGACCCTGAGATGCGGGAACACGTGGACAGGCTTATTTTGGA
GGAGATGCAGAACCCTCGCTTCCCGACAAGATGAGCTTATCTATATTTAC
GACAAACGGTACAACTGAAATTGAGCATAGCCAAAAGCTACACCCGTCGC
TCGAGCAT back to top
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