jgi.p|Nanoce1779_2|630493, mRNA_5709 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630493
Unique Name	mRNA_5709
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3085
Alignment location	scaffold_11:379520..382604 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630579
Track	FilteredModels2
ProteinId	630493

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:379520..382604 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630493	gene_5709	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630493	mRNA_5709-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5709	CDS_5709	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:379520..382604+
coding sequence from alignment at scaffold_11:379520..382604+

mRNA sequence

>mRNA_5709 ID=mRNA_5709|Name=jgi.p|Nanoce1779_2|630493|organism=Nannochloropsis oceanica|type=mRNA|length=3085bp
GACCTTCCATACCCCATTTCAATACACACACGCACTTCCTCGTCCTCCGC
GCACTCTTTTTTCCCTGCTTCTTGCGAAGCCGCCCACGCGCAGGGCATAT
AAGCATTGATGGGGAATAAAGACTTTCTTGTTCCGCTCGCTGGTCCCCTC
GATGACGGATTTCATCGCCCACTTTTGTTGGCCTCCCGCAGCACATAACT
CACAGTCGACGGGGCAGCATCTTTGGATCCTCATGTTTGCACGTCACGCA
CTCACATTAGACGACCACTGGGTCTCCCGAATAAGAAGTTCTGTGCCAAA
GCTGTGGCAGCGCAGGCGCCCATAGTCTGGGAAGGGGGAAGATGCTGTTG
GGGGCTTGCCACTTGCATCGCATGTTGATTTGATGGGCAGAGCAGCAGAA
TCAAGCTGCAGAACACATCTTGCCAGTGCACCGTACTCACGCGTTCATTT
TTCTCACTCCTCCATATCTCCAGGGCTGGTTTCTAGCACGTGTTGAGGCT
CTGGTTTGATAGGCAAGGGCCAAGGCGGCAAGCAATACGCACACAGTCCC
GCCTCCGCCAAGAACAAGTAGCTTTGGGAACGTTGGCGTGGCTGCCTCCT
TTGCGTTGCACGTCGTCGTCCTATAGGACGGCTGACAGCAGCGCTTGGTC
CGACAGTGGTGCCGACGCCTCGTCTAACTCCCTGTCATCCGTGTCTCCTT
TGAGCACGACGACCGCCAACGGGGCCCTCGCGCTCATGTCTCCTCCGGGC
ACCCGCGACAACCACCACCTATCCATGCCACCCCCACCATCACTGGGGTC
TCGCACAGTGAGCCTGCCTTCGGTTACCCCGTCGTTACACCTTCAACGCA
CCATGTCCGCCGCCTCAGACCGGTCTTCATGCTTGTCGCTCTCCCTTACC
CTCACGGACGAGGAAATCCCCGGCGCCGCCTCGACCATCGAAGAGTCCTT
TGATTTCAACGACGAGCTAGACAACGTTTTTTTGCGCGGAAGCGGGGCAC
ACAATCGGGTCGGGCTTGCGATTGGAGCCCGTGGATTGGCCATGCGAGAT
CATCCCAAGATGTTCACTGTGGCTTATGAAGACCTGGAAATTGGCGCTGT
TATCGGCAAAGGCGCGACTGGCGCAGTACTGGAAGCCGTGCACAAACCCA
CGGGGACCAGGTTGGCTTTAAAGGTGATTAACATGTTTGATAAATCTCGT
CGTTCGCAGTTGATACGGGAGATATGCACGTTGTATGACGCCGCCTGCCC
GTCCCTCATCTCTTTTTATGGAGCCTTCTATCGGGAAGGCTGCATCACTC
TTGCCTTGGAGATGATGGACGGCGGCGCTCTCGCGAACCTGATAGCCCAA
CTGGGCCCCATCCCCGAACGCCCTCTCGCTAACATGGTCTTTCAAATCCT
TTGGGCGCTCGCGTACCTGAAACACGACAAGCGGGTGCATCGCGACGTCA
AGCCCTCCAACCTCCTGATCAACAGTCACGGTGAGGTCAAAGTTTCAGAT
TTCGGCCTTTCTGCCGAATTGCAGAGCTCCCTGGCGATGTGCGGGACTTT
TGTGGGCACCTTTAAATATATGTCCCCGGAACGGATTCGCAACCAGCCAT
ATGATTATGCCTCGGATATCTGGAGCCTGGGGTTGACCCTCATAGAGTGC
GCTACGGGCCGCTATCCGTACTTGCAGTCCGGCATGGCGGGGGAGGGAGA
CGAGGAGGAGGACAAGGATGGCAGAGTAGACCCGGCAGCAGCTACAACAG
CAGCAGCAGCGGCGACGTCTTTGAAAAAGTTGCGGAATAAAAGCAGAAGC
CGGAGTAGCAGTTGTATTGAGATGATTCAAGCGATAACGGAGAGCGACCC
TCCTACCTTACCTGCGGGCCCGAAATTCTCCCCGGAGTTTCATGCGTTCT
TGGACAATTTATTGCAGAAGGACCCGAGGCGACGGCTGCCACCCGAGATT
TTACTCGGGGCCCCGTGGCTGAGGCAGTCGGGGGCAGTGTCACTGGCGGA
GGCTGTGCGGAATACCAGGCATTGGATTCATCACGAAGCAGTGCCGGGGA
GGAAGGATTATGGAAGTGATAATTTGGTGCGAACAGGAGGCACTGAGGAA
GAGAGAAGGGAGGGAGGCAGTGGTAATAGGGGAGGGCGCAGTACTGTCAG
CTGCAGCTGCAGCAGCAGCAGCAGCGCTTCAAACTCACGAAGAAGTAATA
GTGCGGCGGCGGCTCCGGCGGCTGCTGCGGCGGCGACCGTTCATACATCG
GTGGGTGCGGGGTCGGTTATCTGCTCCGCGCCACCCATGCCAATGCCTGG
GCAGTCGACCGTCTCTGGAGGAGGAGCTCCAAGCCTATCATCTCTGTCCT
CGTCGTCCTTGCGGCAGGGGATGCGCTCTACAATAGGAGGAGCGGTGGGA
GGAGGGGGAAGAGTGGTCGCATTAGCCCCACCGTTACCTCTACGGGCGCG
GTCTTCGTCTTCCTTGAATCCCTCCTCATCTTCCCTTTCATTCTCGTCCT
CGCACCAATATCAGCGCCACAACGCCCCCCCGCTGCGGTCCTTTTCCACG
TGACGGAGGGAGGGAGAGGGAGGAAAGTGATGACAGGAGGAACACGCAGT
CGAGACGTATTGTATGCAAAGAATCGAGCGAGGAGAATAAAGGAGGAGAG
AGATGAGACTCAGTCAAACAAAAGTAAGAGATCCCTTGAGTACGGATGTA
TGCGAGAAATTGTGTGGAAAATGAAATCGAACACAGAGTAGGGAGTGAAG
AAGAGAAAGAGAATGTAAATGTGGCAATGGCCCACACCGCCTAAATGTGG
GTGTATCGATAGACCGGCTAGCCAGGAGTGGGGGGAAAGTTTGTGAAAAA
ATCAGCTCAGAAGGGAGAATGAATGCAGTGGTAATTGTGTAAGTTACACG
TGAAAAAGGTTTGAGGGAGGAGAGGAGAAATAACAGAAGGGACAAAAGAG
GACCTGCTCTGCCACTGTCAGCAAATCAAATGTAGAAAAAGAAGAAAGCC
AATCCAGCACGAAGAACGAGAACAAGGAGGAAAGAGAGCAAGGAAGAAAG
AAGGCACGAGCGATTTATGTGTCGGAAAGCGAAGC

protein sequence of jgi.p|Nanoce1779_2|630493

>mRNA_5709-protein ID=mRNA_5709-protein|Name=jgi.p|Nanoce1779_2|630493|organism=Nannochloropsis oceanica|type=polypeptide|length=606bp
MSPPGTRDNHHLSMPPPPSLGSRTVSLPSVTPSLHLQRTMSAASDRSSCL
SLSLTLTDEEIPGAASTIEESFDFNDELDNVFLRGSGAHNRVGLAIGARG
LAMRDHPKMFTVAYEDLEIGAVIGKGATGAVLEAVHKPTGTRLALKVINM
FDKSRRSQLIREICTLYDAACPSLISFYGAFYREGCITLALEMMDGGALA
NLIAQLGPIPERPLANMVFQILWALAYLKHDKRVHRDVKPSNLLINSHGE
VKVSDFGLSAELQSSLAMCGTFVGTFKYMSPERIRNQPYDYASDIWSLGL
TLIECATGRYPYLQSGMAGEGDEEEDKDGRVDPAAATTAAAAATSLKKLR
NKSRSRSSSCIEMIQAITESDPPTLPAGPKFSPEFHAFLDNLLQKDPRRR
LPPEILLGAPWLRQSGAVSLAEAVRNTRHWIHHEAVPGRKDYGSDNLVRT
GGTEEERREGGSGNRGGRSTVSCSCSSSSSASNSRRSNSAAAAPAAAAAA
TVHTSVGAGSVICSAPPMPMPGQSTVSGGGAPSLSSLSSSSLRQGMRSTI
GGAVGGGGRVVALAPPLPLRARSSSSLNPSSSSLSFSSSHQYQRHNAPPL
RSFST*

mRNA from alignment at scaffold_11:379520..382604+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5709 ID=mRNA_5709|Name=jgi.p|Nanoce1779_2|630493|organism=Nannochloropsis oceanica|type=mRNA|length=3085bp|location=Sequence derived from alignment at scaffold_11:379520..382604+ (Nannochloropsis oceanica)
GACCTTCCATACCCCATTTCAATACACACACGCACTTCCTCGTCCTCCGC
GCACTCTTTTTTCCCTGCTTCTTGCGAAGCCGCCCACGCGCAGGGCATAT
AAGCATTGATGGGGAATAAAGACTTTCTTGTTCCGCTCGCTGGTCCCCTC
GATGACGGATTTCATCGCCCACTTTTGTTGGCCTCCCGCAGCACATAACT
CACAGTCGACGGGGCAGCATCTTTGGATCCTCATGTTTGCACGTCACGCA
CTCACATTAGACGACCACTGGGTCTCCCGAATAAGAAGTTCTGTGCCAAA
GCTGTGGCAGCGCAGGCGCCCATAGTCTGGGAAGGGGGAAGATGCTGTTG
GGGGCTTGCCACTTGCATCGCATGTTGATTTGATGGGCAGAGCAGCAGAA
TCAAGCTGCAGAACACATCTTGCCAGTGCACCGTACTCACGCGTTCATTT
TTCTCACTCCTCCATATCTCCAGGGCTGGTTTCTAGCACGTGTTGAGGCT
CTGGTTTGATAGGCAAGGGCCAAGGCGGCAAGCAATACGCACACAGTCCC
GCCTCCGCCAAGAACAAGTAGCTTTGGGAACGTTGGCGTGGCTGCCTCCT
TTGCGTTGCACGTCGTCGTCCTATAGGACGGCTGACAGCAGCGCTTGGTC
CGACAGTGGTGCCGACGCCTCGTCTAACTCCCTGTCATCCGTGTCTCCTT
TGAGCACGACGACCGCCAACGGGGCCCTCGCGCTCATGTCTCCTCCGGGC
ACCCGCGACAACCACCACCTATCCATGCCACCCCCACCATCACTGGGGTC
TCGCACAGTGAGCCTGCCTTCGGTTACCCCGTCGTTACACCTTCAACGCA
CCATGTCCGCCGCCTCAGACCGGTCTTCATGCTTGTCGCTCTCCCTTACC
CTCACGGACGAGGAAATCCCCGGCGCCGCCTCGACCATCGAAGAGTCCTT
TGATTTCAACGACGAGCTAGACAACGTTTTTTTGCGCGGAAGCGGGGCAC
ACAATCGGGTCGGGCTTGCGATTGGAGCCCGTGGATTGGCCATGCGAGAT
CATCCCAAGATGTTCACTGTGGCTTATGAAGACCTGGAAATTGGCGCTGT
TATCGGCAAAGGCGCGACTGGCGCAGTACTGGAAGCCGTGCACAAACCCA
CGGGGACCAGGTTGGCTTTAAAGGTGATTAACATGTTTGATAAATCTCGT
CGTTCGCAGTTGATACGGGAGATATGCACGTTGTATGACGCCGCCTGCCC
GTCCCTCATCTCTTTTTATGGAGCCTTCTATCGGGAAGGCTGCATCACTC
TTGCCTTGGAGATGATGGACGGCGGCGCTCTCGCGAACCTGATAGCCCAA
CTGGGCCCCATCCCCGAACGCCCTCTCGCTAACATGGTCTTTCAAATCCT
TTGGGCGCTCGCGTACCTGAAACACGACAAGCGGGTGCATCGCGACGTCA
AGCCCTCCAACCTCCTGATCAACAGTCACGGTGAGGTCAAAGTTTCAGAT
TTCGGCCTTTCTGCCGAATTGCAGAGCTCCCTGGCGATGTGCGGGACTTT
TGTGGGCACCTTTAAATATATGTCCCCGGAACGGATTCGCAACCAGCCAT
ATGATTATGCCTCGGATATCTGGAGCCTGGGGTTGACCCTCATAGAGTGC
GCTACGGGCCGCTATCCGTACTTGCAGTCCGGCATGGCGGGGGAGGGAGA
CGAGGAGGAGGACAAGGATGGCAGAGTAGACCCGGCAGCAGCTACAACAG
CAGCAGCAGCGGCGACGTCTTTGAAAAAGTTGCGGAATAAAAGCAGAAGC
CGGAGTAGCAGTTGTATTGAGATGATTCAAGCGATAACGGAGAGCGACCC
TCCTACCTTACCTGCGGGCCCGAAATTCTCCCCGGAGTTTCATGCGTTCT
TGGACAATTTATTGCAGAAGGACCCGAGGCGACGGCTGCCACCCGAGATT
TTACTCGGGGCCCCGTGGCTGAGGCAGTCGGGGGCAGTGTCACTGGCGGA
GGCTGTGCGGAATACCAGGCATTGGATTCATCACGAAGCAGTGCCGGGGA
GGAAGGATTATGGAAGTGATAATTTGGTGCGAACAGGAGGCACTGAGGAA
GAGAGAAGGGAGGGAGGCAGTGGTAATAGGGGAGGGCGCAGTACTGTCAG
CTGCAGCTGCAGCAGCAGCAGCAGCGCTTCAAACTCACGAAGAAGTAATA
GTGCGGCGGCGGCTCCGGCGGCTGCTGCGGCGGCGACCGTTCATACATCG
GTGGGTGCGGGGTCGGTTATCTGCTCCGCGCCACCCATGCCAATGCCTGG
GCAGTCGACCGTCTCTGGAGGAGGAGCTCCAAGCCTATCATCTCTGTCCT
CGTCGTCCTTGCGGCAGGGGATGCGCTCTACAATAGGAGGAGCGGTGGGA
GGAGGGGGAAGAGTGGTCGCATTAGCCCCACCGTTACCTCTACGGGCGCG
GTCTTCGTCTTCCTTGAATCCCTCCTCATCTTCCCTTTCATTCTCGTCCT
CGCACCAATATCAGCGCCACAACGCCCCCCCGCTGCGGTCCTTTTCCACG
TGACGGAGGGAGGGAGAGGGAGGAAAGTGATGACAGGAGGAACACGCAGT
CGAGACGTATTGTATGCAAAGAATCGAGCGAGGAGAATAAAGGAGGAGAG
AGATGAGACTCAGTCAAACAAAAGTAAGAGATCCCTTGAGTACGGATGTA
TGCGAGAAATTGTGTGGAAAATGAAATCGAACACAGAGTAGGGAGTGAAG
AAGAGAAAGAGAATGTAAATGTGGCAATGGCCCACACCGCCTAAATGTGG
GTGTATCGATAGACCGGCTAGCCAGGAGTGGGGGGAAAGTTTGTGAAAAA
ATCAGCTCAGAAGGGAGAATGAATGCAGTGGTAATTGTGTAAGTTACACG
TGAAAAAGGTTTGAGGGAGGAGAGGAGAAATAACAGAAGGGACAAAAGAG
GACCTGCTCTGCCACTGTCAGCAAATCAAATGTAGAAAAAGAAGAAAGCC
AATCCAGCACGAAGAACGAGAACAAGGAGGAAAGAGAGCAAGGAAGAAAG
AAGGCACGAGCGATTTATGTGTCGGAAAGCGAAGC

Coding sequence (CDS) from alignment at scaffold_11:379520..382604+

>mRNA_5709 ID=mRNA_5709|Name=jgi.p|Nanoce1779_2|630493|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_11:379520..382604+ (Nannochloropsis oceanica)
ATGTCTCCTCCGGGCACCCGCGACAACCACCACCTATCCATGCCACCCCC
ACCATCACTGGGGTCTCGCACAGTGAGCCTGCCTTCGGTTACCCCGTCGT
TACACCTTCAACGCACCATGTCCGCCGCCTCAGACCGGTCTTCATGCTTG
TCGCTCTCCCTTACCCTCACGGACGAGGAAATCCCCGGCGCCGCCTCGAC
CATCGAAGAGTCCTTTGATTTCAACGACGAGCTAGACAACGTTTTTTTGC
GCGGAAGCGGGGCACACAATCGGGTCGGGCTTGCGATTGGAGCCCGTGGA
TTGGCCATGCGAGATCATCCCAAGATGTTCACTGTGGCTTATGAAGACCT
GGAAATTGGCGCTGTTATCGGCAAAGGCGCGACTGGCGCAGTACTGGAAG
CCGTGCACAAACCCACGGGGACCAGGTTGGCTTTAAAGGTGATTAACATG
TTTGATAAATCTCGTCGTTCGCAGTTGATACGGGAGATATGCACGTTGTA
TGACGCCGCCTGCCCGTCCCTCATCTCTTTTTATGGAGCCTTCTATCGGG
AAGGCTGCATCACTCTTGCCTTGGAGATGATGGACGGCGGCGCTCTCGCG
AACCTGATAGCCCAACTGGGCCCCATCCCCGAACGCCCTCTCGCTAACAT
GGTCTTTCAAATCCTTTGGGCGCTCGCGTACCTGAAACACGACAAGCGGG
TGCATCGCGACGTCAAGCCCTCCAACCTCCTGATCAACAGTCACGGTGAG
GTCAAAGTTTCAGATTTCGGCCTTTCTGCCGAATTGCAGAGCTCCCTGGC
GATGTGCGGGACTTTTGTGGGCACCTTTAAATATATGTCCCCGGAACGGA
TTCGCAACCAGCCATATGATTATGCCTCGGATATCTGGAGCCTGGGGTTG
ACCCTCATAGAGTGCGCTACGGGCCGCTATCCGTACTTGCAGTCCGGCAT
GGCGGGGGAGGGAGACGAGGAGGAGGACAAGGATGGCAGAGTAGACCCGG
CAGCAGCTACAACAGCAGCAGCAGCGGCGACGTCTTTGAAAAAGTTGCGG
AATAAAAGCAGAAGCCGGAGTAGCAGTTGTATTGAGATGATTCAAGCGAT
AACGGAGAGCGACCCTCCTACCTTACCTGCGGGCCCGAAATTCTCCCCGG
AGTTTCATGCGTTCTTGGACAATTTATTGCAGAAGGACCCGAGGCGACGG
CTGCCACCCGAGATTTTACTCGGGGCCCCGTGGCTGAGGCAGTCGGGGGC
AGTGTCACTGGCGGAGGCTGTGCGGAATACCAGGCATTGGATTCATCACG
AAGCAGTGCCGGGGAGGAAGGATTATGGAAGTGATAATTTGGTGCGAACA
GGAGGCACTGAGGAAGAGAGAAGGGAGGGAGGCAGTGGTAATAGGGGAGG
GCGCAGTACTGTCAGCTGCAGCTGCAGCAGCAGCAGCAGCGCTTCAAACT
CACGAAGAAGTAATAGTGCGGCGGCGGCTCCGGCGGCTGCTGCGGCGGCG
ACCGTTCATACATCGGTGGGTGCGGGGTCGGTTATCTGCTCCGCGCCACC
CATGCCAATGCCTGGGCAGTCGACCGTCTCTGGAGGAGGAGCTCCAAGCC
TATCATCTCTGTCCTCGTCGTCCTTGCGGCAGGGGATGCGCTCTACAATA
GGAGGAGCGGTGGGAGGAGGGGGAAGAGTGGTCGCATTAGCCCCACCGTT
ACCTCTACGGGCGCGGTCTTCGTCTTCCTTGAATCCCTCCTCATCTTCCC
TTTCATTCTCGTCCTCGCACCAATATCAGCGCCACAACGCCCCCCCGCTG
CGGTCCTTTTCCACGTGA

Synonyms

Publications