jgi.p|Nanoce1779_2|52671, mRNA_5055 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|52671
Unique NamemRNA_5055
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1063
Alignment locationscaffold_12:345298..346938 -

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Properties
Property NameValue
TranscriptId52757
TrackFilteredModels2
ProteinId52671
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:345298..346938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|52671gene_5055Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|52671mRNA_5055-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5055CDS_5055Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5055 ID=mRNA_5055|Name=jgi.p|Nanoce1779_2|52671|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp
AATTGCACCCCTTACTATGGTGCTACTCTGTCGTTTGCATGTGCATCGCT
TGTCCTTTCCCGCAGCAAGACAATGACCAAAGAAAGCGGACACTTGCCTT
CAGGCGTCGTCAACCCCCGAGTTAATATTACACCTGACCGCCCAACACAG
CAATCAAGCCCACAAATGGCAGCGAGGGAAGGCACCAAAGAGGAGCGGCA
ACCCTTGCGGTCGGGCACCGAGGTTAAGCCTGTCTACTTCGTGCCATCGC
GCTCGGGCAGCATGGGGGCCGCCAATGATGTAAGAAAGATGGGAAGGCGG
GGTTGGAAGAGGAGACCGGGAGGAGGATAGCCCGGCGCATACACTGGCAT
GCGTACACTACTGTTGACCCCATCTCATCCACATACAGGGCCACGTGAAT
GGGCACGACATGTCTACCTCCTCTTTGTCTGGCTTGGGCACAAATGCGCT
TCTTGGGGGCTGGTGGCCATTCTCGTCGAGGGGCGGGGGCGGAGGTGGCT
ACGGTAGCTTGGGAGGCACACCTGGTGCACGAAAGATCCGCAAGGTGCCC
GTCAAGGTCGAGCCCAAGGTCTTCTTCGCCAACGAACGTACTTTCCTCGC
GTGGCTTAACATGGCCGTGACCCTCTCCTCCATCTCCATCGCCATCCTTG
CCTTTGCCGACCACAACGAGTTCTCACAGATTTATGGCTTCATCATACTG
CCGGTGGCTATATGTTTTTGTGTGTACGCGTTGCAGACCTACGTGAGGAG
GTCCTCCATGCTCCGCAATCGTCTCCCCGGGCCCTACGAAGATCGGATCG
GCCCAATAGTTCTGACGGTGCTCCTGGTGCTCTCCATCTTAATCAACATG
ATCCTAAAAATCGTGGATATTTACTCGCCGTCTTCGTCGGGGGGAAAGGG
CACAGGAGCGGGTGGAGGCAGGGTGAGGCCAATTAATTAATAGCGGAGGG
TGGCTGGGAGGGAGGGAGAAAGGGAGGGAGGAACGGAGGGAGGAAGGGAT
GGGTTGGATAAAAGTCAATGAGGAATATGGGGTATCTTGTACGTACGCGA
AGGAAGAGAAGGG
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protein sequence of jgi.p|Nanoce1779_2|52671

>mRNA_5055-protein ID=mRNA_5055-protein|Name=jgi.p|Nanoce1779_2|52671|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MSTSSLSGLGTNALLGGWWPFSSRGGGGGGYGSLGGTPGARKIRKVPVKV
EPKVFFANERTFLAWLNMAVTLSSISIAILAFADHNEFSQIYGFIILPVA
ICFCVYALQTYVRRSSMLRNRLPGPYEDRIGPIVLTVLLVLSILINMILK
IVDIYSPSSSGGKGTGAGGGRVRPIN*
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mRNA from alignment at scaffold_12:345298..346938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5055 ID=mRNA_5055|Name=jgi.p|Nanoce1779_2|52671|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp|location=Sequence derived from alignment at scaffold_12:345298..346938- (Nannochloropsis oceanica)
AATTGCACCCCTTACTATGGTGCTACTCTGTCGTTTGCATGTGCATCGCT
TGTCCTTTCCCGCAGCAAGACAATGACCAAAGAAAGCGGACACTTGCCTT
CAGGCGTCGTCAACCCCCGAGTTAATATTACACCTGACCGCCCAACACAG
CAATCAAGCCCACAAATGGCAGCGAGGGAAGGCACCAAAGAGGAGCGGCA
ACCCTTGCGGTCGGGCACCGAGGTTAAGCCTGTCTACTTCGTGCCATCGC
GCTCGGGCAGCATGGGGGCCGCCAATGATGTAAGAAAGATGGGAAGGCGG
GGTTGGAAGAGGAGACCGGGAGGAGGATAGCCCGGCGCATACACTGGCAT
GCGTACACTACTGTTGACCCCATCTCATCCACATACAGGGCCACGTGAAT
GGGCACGACATGTCTACCTCCTCTTTGTCTGGCTTGGGCACAAATGGTAC
GTGGGTGTGGAGCAGGAGGGCAATTGAATCTATGAATGTGCTGTGCGCCC
TGGTCGGTCGCCAATTCACTTCCCTCCTTCCACCGTCACTTTCTAAAAAA
ACTGAAAATCAAATAATTTCTTTAACTCTCCACCAGCGCTTCTTGGGGGC
TGGTGGCCATTCTCGTCGAGGGGCGGGGGCGGAGGTGGCTACGGTAGCTT
GGGAGGCACACCTGGTGCACGAAAGATCCGCAAGGTGCCCGTCAAGGTCG
AGCCCAAGGTACGCTGCTCTTAGTTAGAACATTCTTTTCAAGTGTAGCTG
CTCGACACAGTACTCACAACCCTCCCCACCCTCTCTCCTCCTTCTCCTTC
CTAGGTCTTCTTCGCCAACGAACGTACTTTCCTCGCGTGGCTTAACATGG
CCGTGACCCTCTCCTCCATCTCCATCGCCATCCTTGCCTTTGCCGACCAC
AACGAGTTCTCACAGATTTATGGCTTCATCATACTGCCGGTGGCTATATG
TTTTTGTGTGTACGCGTTGCAGACCTACGTGAGGAGGTAAAAGCCAAAAG
ATTGTCTCTCTCCCCGATGTCTCTCTGTCCGAGTGTGATTATTTTTCAAC
CTTTGTTTTTTTTTAAAACTTCAAAATTTTGACGGAGGTGATGTTTTTAT
TGGTGGCAAGCCCTGCAGACTCGTGTCGAGGGGTGGATATGAAGCGAAGG
AGGAGAAAGAGGAAGGGAGAGAGAGAAGAGGACCGGTTGATAGGATCAAG
CTATTGCGGGTTTCATGTGTCTTGTCCATGGGTCTCCCCTTCCCTCCTAC
TCCGTCCTGACCGCTATTCCATCCTGGCCGAAATGATAACCAATGCCCTC
TACCTCTTCCCGCCTCTTCCTCTTACAGGTCCTCCATGCTCCGCAATCGT
CTCCCCGGGCCCTACGAAGATCGGATCGGCCCAATAGTTCTGACGGTGCT
CCTGGTGCTCTCCATCTTAATCAACATGATCCTAAAAATCGTGGATATTT
ACTCGCCGTCTTCGTCGGGGGGAAAGGGCACAGGAGCGGGTGGAGGCAGG
GTGAGGCCAATTAATTAATAGCGGAGGGTGGCTGGGAGGGAGGGAGAAAG
GGAGGGAGGAACGGAGGGAGGAAGGGATGGGTTGGATAAAAGTCAATGAG
GAATATGGGGTATCTTGTACGTACGCGAAGGAAGAGAAGGG
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Coding sequence (CDS) from alignment at scaffold_12:345298..346938-

>mRNA_5055 ID=mRNA_5055|Name=jgi.p|Nanoce1779_2|52671|organism=Nannochloropsis oceanica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_12:345298..346938- (Nannochloropsis oceanica)
GTCCTCCATGCTCCGCAATCGTCTCCCCGGGCCCTACGAAGATCGGATCG
GCCCAATAGTTCTGACGGTGCTCCTGGTGCTCTCCATCTTAATCAACATG
ATCCTAAAAATCGTGGATATTTACTCGCCGTCTTCGTCGGGGGGAAAGGG
CACAGGAGCGGGTGGAGGCAGGGTGAGGCCAATTAATTAAGTCTTCTTCG
CCAACGAACGTACTTTCCTCGCGTGGCTTAACATGGCCGTGACCCTCTCC
TCCATCTCCATCGCCATCCTTGCCTTTGCCGACCACAACGAGTTCTCACA
GATTTATGGCTTCATCATACTGCCGGTGGCTATATGTTTTTGTGTGTACG
CGTTGCAGACCTACGTGAGGAGCGCTTCTTGGGGGCTGGTGGCCATTCTC
GTCGAGGGGCGGGGGCGGAGGTGGCTACGGTAGCTTGGGAGGCACACCTG
GTGCACGAAAGATCCGCAAGGTGCCCGTCAAGGTCGAGCCCAAGATGTCT
ACCTCCTCTTTGTCTGGCTTGGGCACAAATGGTCCTCCATGCTCCGCAAT
CGTCTCCCCGGGCCCTACGAAGATCGGATCGGCCCAATAGTTCTGACGGT
GCTCCTGGTGCTCTCCATCTTAATCAACATGATCCTAAAAATCGTGGATA
TTTACTCGCCGTCTTCGTCGGGGGGAAAGGGCACAGGAGCGGGTGGAGGC
AGGGTGAGGCCAATTAATTAAGTCTTCTTCGCCAACGAACGTACTTTCCT
CGCGTGGCTTAACATGGCCGTGACCCTCTCCTCCATCTCCATCGCCATCC
TTGCCTTTGCCGACCACAACGAGTTCTCACAGATTTATGGCTTCATCATA
CTGCCGGTGGCTATATGTTTTTGTGTGTACGCGTTGCAGACCTACGTGAG
GAGCGCTTCTTGGGGGCTGGTGGCCATTCTCGTCGAGGGGCGGGGGCGGA
GGTGGCTACGGTAGCTTGGGAGGCACACCTGGTGCACGAAAGATCCGCAA
GGTGCCCGTCAAGGTCGAGCCCAAGATGTCTACCTCCTCTTTGTCTGGCT
TGGGCACAAATGGTCCTCCATGCTCCGCAATCGTCTCCCCGGGCCCTACG
AAGATCGGATCGGCCCAATAGTTCTGACGGTGCTCCTGGTGCTCTCCATC
TTAATCAACATGATCCTAAAAATCGTGGATATTTACTCGCCGTCTTCGTC
GGGGGGAAAGGGCACAGGAGCGGGTGGAGGCAGGGTGAGGCCAATTAATT
AAGTCTTCTTCGCCAACGAACGTACTTTCCTCGCGTGGCTTAACATGGCC
GTGACCCTCTCCTCCATCTCCATCGCCATCCTTGCCTTTGCCGACCACAA
CGAGTTCTCACAGATTTATGGCTTCATCATACTGCCGGTGGCTATATGTT
TTTGTGTGTACGCGTTGCAGACCTACGTGAGGAGCGCTTCTTGGGGGCTG
GTGGCCATTCTCGTCGAGGGGCGGGGGCGGAGGTGGCTACGGTAGCTTGG
GAGGCACACCTGGTGCACGAAAGATCCGCAAGGTGCCCGTCAAGGTCGAG
CCCAAGATGTCTACCTCCTCTTTGTCTGGCTTGGGCACAAATGGTCCTCC
ATGCTCCGCAATCGTCTCCCCGGGCCCTACGAAGATCGGATCGGCCCAAT
AGTTCTGACGGTGCTCCTGGTGCTCTCCATCTTAATCAACATGATCCTAA
AAATCGTGGATATTTACTCGCCGTCTTCGTCGGGGGGAAAGGGCACAGGA
GCGGGTGGAGGCAGGGTGAGGCCAATTAATTAAGTCTTCTTCGCCAACGA
ACGTACTTTCCTCGCGTGGCTTAACATGGCCGTGACCCTCTCCTCCATCT
CCATCGCCATCCTTGCCTTTGCCGACCACAACGAGTTCTCACAGATTTAT
GGCTTCATCATACTGCCGGTGGCTATATGTTTTTGTGTGTACGCGTTGCA
GACCTACGTGAGGAGCGCTTCTTGGGGGCTGGTGGCCATTCTCGTCGAGG
GGCGGGGGCGGAGGTGGCTACGGTAGCTTGGGAGGCACACCTGGTGCACG
AAAGATCCGCAAGGTGCCCGTCAAGGTCGAGCCCAAGATGTCTACCTCCT
CTTTGTCTGGCTTGGGCACAAATG
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Synonyms
Publications