Properties
| Property Name | Value |
|---|
| TranscriptId | 543337 |
| Track | FilteredModels2 |
| ProteinId | 543251 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:635512..639277 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5528 ID=mRNA_5528|Name=jgi.p|Nanoce1779_2|543251|organism=Nannochloropsis oceanica|type=mRNA|length=3623bp
ACAGGCCGTTCGCTATTCGCAGCAGTAGCCATGGCCGCTCCCACCGGTCA
CAGGCGACGGGTATCGTCGACCTGTTCCTCAGGTATCTCGCCACCACTCC
TCCTTTCCGCCCCAAGTCGCGGGCTTGTCCTCCTCCTCCTTGTCCTCCTC
CTAGTCGCCTCGTCATGGCCTGCATCGGCCGCCTCGGCATTGACGGGCGT
GTCACAAGTTTCACAAGTTCTGGGCAAGAGCGCGTTGGGCCTAGCGCCGT
GGAAGATATTTGATTGCAACAGGGCGAGCAGCAGCAGTACCACTAGCAGC
ACCTCTAAGGCGGCGACGAAAGCCACAACATCGCCCGTGGTTGTGGCAAC
AGCAGCAACAGCAAGGGATTATAATTTATTTTATTTTCCTGCATTTCAAC
ATCAACGGGAGACGGAAGCCAAGATTTGCCGAGTCGAACCGTCCTCGACA
GCAGCTGCAGGAGCTATGAAGCTAACAACCCCCACCCGCAGTAGCAGCAC
CACCACTCCGAGAAGAAGAGACTCCTCATTCTCTTCCCTTCCTTCCCAAG
GCCGCGCTACCACCGCCGCCGCAGCCATACCCCCTCCCTCCGCCTCCCCT
CCTTCATTCCGCTTCCCCTTCTTCCGACCGAGCCTTCCGGCCCTTCACGT
CAACAAAACACTCACTTTTTGGGGAAATATGCTTGCGGGCGCCGTGTCCC
GCTCCTGCGCACAGACGGCAATGCACCCCGCCAATGTTGTCAAGACCTTG
CTGCAAACCAAGGGGTCAGCTGAGCTGAGTAATTTGAATTTTCAAATTTT
GACCCGGGGGGCCGGAGCCCAGTTCGCGCTGTCGTTGCCTCATGGGGCTT
TGGCTTTCGCAGTATTGGAGGCGACCAAGACAACTTTATCGAGCTGGTTT
CCTGTGGGATTTGCCGGTCCGGCGTTTGACTTCGTCTCGTCGGCCGTGAG
CACGACCTTGTGCTCGGTCATTAGCACGCCACAGATGGTGTTAACCGACA
GGATTATGGCGGGGTATTACCCTAACCTCATCAACGGGGTGTCGACGGTG
ATGAAGAGGGACGGGGTGCGAGGCCTATACGCGGGGTGGTTCGCGGCCTT
GGCGCAGAAAATCCCGAGCTATGGCTTAACTTGGGTGTTTTTCCAACAAC
TTAAATTGGCACGCACCCGGTGGTTGAATCATGAGGCGACCAATGCGGAG
AATTTCGGGATGGGGGCATTCGCGGCAGCAGCCACGGTGTGTGTTATGAT
TCCGCTGGACACGGTCAAGACAAGAATTGTCACGCAGGCGGCGAACCCGA
TGGCGGGCGTGCACTACAAGGGTGTGTTGGATTGTTTTACACGGGTGCTG
CGAGAGGAAGGCTTGAAGACGTTTTATGCCCCCCTGGCCCCGCGCCTGGT
CAGTGTGGTACCCATGATTGGTATCCAATTTGGTGTCTACGAGTTTATGA
AGCGGACCATTGCAGGCATGCCCGAGAAGCCACTCAGGGAGGGCGGAAGG
GAGGGAGGGATGGCGGCGGGGTGGGAGGGGATGAAGGCCTGGGCAAGAAG
GAGGGTGCCAAGTTTGGCCCCGGGATCTGAATCCCCCTTGTCCGAGCCGC
CTTTGAGTGAAATCTTTGATGAGATTGAGGATGCAAATTAGAGGAGGAGA
GGGGAGGGAGGGAGTGTCGCGTTTAAGAAAGTGCACGAGCAAATATACAT
ATATAGATAGAGAACGCATTGGAAACTAAAGAGGGGGAGGAAGAGAGGGA
GGAAAGGAGGGGGGAAAGTTGTCGAGGATCGATCGGTTTCCCTTTCCTAT
CATGGCGTAAGCTACTTGTTCCAGCACATATAAGAAAAATAGACAGTTAC
AGAGCTGTGAGCTCTCATTTCACACCTCGCTACGTCTCATAGCAGCAGAG
CGCGTGTATGCATGTCGTCTCTGTCATTCTGGTACCTCTCCCAATTTCTG
ATTCTCTTTTATGGCTTGTACAAGATTCCCCCCCTTATGGATCAGACGGC
GCACATTTAGACGAGTGTCAGCGTGCAACACCTGCGTCTCCAGCTTGAGC
TCTCTCGCCGACTCGCCCCCCGAACGGGTTCTTTTTCCCAGCTCACGCAC
AGTACGATGCAAGCTCATGATAATGTCGCCGCGACCAATGCACCTCGCAC
GCTAGGCACAGAGAAGTAAAATTACATACGTACATAAACGTGTCATGGCG
CATCAGCCGTCGCATTTGTTGGGGGCCCTCCATGAAGACACTCTGCGGCG
TCTCCTCGAGGTGCATGCTGCAGCCCAGTCTCCTCTACCACCTCCACCTC
CGCCCCCCTTACACCTTCAACCCCCCTCCTCACGCCCTTCATCATCGAAA
CGTCATGCCAGCACCAGCAACAGTCGCAGCAGATTACGAGGCGAACACTT
TTCCTCGCCTTCACCGTCCTCTCCCGCCCCTACATTTTCCTCCACCAACC
TCATCGAAGTGGACCAAGAGCGCCGCGATTTAGAGGCTCGTACTTTGTCC
TTGCGACGGGCCTTGCTGCGGACACATTTTCATATTCATGAAGTGCAGGA
CGAGGAGCCACTACAACCACTTCCACTACCACCGCCACCACCCCAACCGC
CAAGAGCAAGCACTCTCGTCCCTCCCCCCCTTCCTACTTCCTCGCCACCT
CTCTTCGATGACGACGTGGAAGGCCCTTATTCCGACGCATCTTACTCCGC
CATTGCAGCCGCAGCAGCTGCTGCTGTCGGGTGGGGATGGGCGCAGAAAA
AGCAACGTGCTGACAGGCACTGCGTTAGGGTTTTGGAGGGGCGCTCTCTG
ACCCGATGGTTGAAGTGGCTGCTGCACCGACGCTTGGCCAAAGAAAGAGA
AAACGAGATTGGAGAGGCAATGACTTTCTACAAACAAGGACAGGCGCTGG
CTCGCTTTCGTCGACGGGCGAGTAATTCCCGCGTGCAGCACATGGCAATG
CTCCGGGTGGTCTTGATGGAAGGAGGAAGGGAGGGAGAAAGGGAGGGAGG
AAGGGAGGGAGAGCAAGAGCAGCCTTTACCCTCCTTTTCCTCTTCCGTTT
TTAAATACCATCAACTACAACAGGAGATTTCCAATTCTTGTTTTCTCTTT
GCTTCTCTCACCACCACCTACACCCGCGCTGCCCTCCGCCTCCTCCTCAC
CAGGGGCTTCCACCGCTTGCACCGGCATCACGTCACCTCAACCCACATTC
GCTCCCTCAAGCGCCACGCCATCCAAGATGCCCTCCTTCCTTCTCTCCTT
CGCAAGGGGCTTCAGGCTCTACGACGCAACAACAAGCAAGCCCGTCGGCG
TCTCTTACATAAAAAAGCAGCAGACATGAGGAAGTACCAGCAGCTGCAGC
AGCAGCAGCGGGCACTACAGCAGTGGTGCGCGTGGAGAAATAGAAGAAGG
AACCGGAAGCTATTAATGAAGAAGGGAGAACTGTGGTGGGATTTGAGATT
GAAAGAGGGAGGGTTGCGAAGGTGGGGGGGAGGGTGGTGTGAGGCGAGGA
GGGAGGGAAGGAGGCTGGTGAGAGGGATGGATGCGTGGCATGAGCAGCGG
CTGCAGCAAAGGGGGGTAAAGACGTGGCTTTGTATGTTTGTAGTCCGTCG
GGAGGAGAGGAGGATGTTGAAGA back to topprotein sequence of jgi.p|Nanoce1779_2|543251 >mRNA_5528-protein ID=mRNA_5528-protein|Name=jgi.p|Nanoce1779_2|543251|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MAAPTGHRRRVSSTCSSGISPPLLLSAPSRGLVLLLLVLLLVASSWPASA
ASALTGVSQVSQVLGKSALGLAPWKIFDCNRASSSSTTSSTSKAATKATT
SPVVVATAATARDYNLFYFPAFQHQRETEAKICRVEPSSTAAAGAMKLTT
PTRSSSTTTPRRRDSSFSSLPSQGRATTAAAAIPPPSASPPSFRFPFFRP
SLPALHVNKTLTFWGNMLAGAVSRSCAQTAMHPANVVKTLLQTKGSAELS
NLNFQILTRGAGAQFALSLPHGALAFAVLEATKTTLSSWFPVGFAGPAFD
FVSSAVSTTLCSVISTPQMVLTDRIMAGYYPNLINGVSTVMKRDGVRGLY
AGWFAALAQKIPSYGLTWVFFQQLKLARTRWLNHEATNAENFGMGAFAAA
ATVCVMIPLDTVKTRIVTQAANPMAGVHYKGVLDCFTRVLREEGLKTFYA
PLAPRLVSVVPMIGIQFGVYEFMKRTIAGMPEKPLREGGREGGMAAGWEG
MKAWARRRVPSLAPGSESPLSEPPLSEIFDEIEDAN* back to topmRNA from alignment at scaffold_13:635512..639277- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5528 ID=mRNA_5528|Name=jgi.p|Nanoce1779_2|543251|organism=Nannochloropsis oceanica|type=mRNA|length=3766bp|location=Sequence derived from alignment at scaffold_13:635512..639277- (Nannochloropsis oceanica)
ACAGGCCGTTCGCTATTCGCAGCAGTAGCCATGGCCGCTCCCACCGGTCA
CAGGCGACGGGTATCGTCGACCTGTTCCTCAGGTATCTCGCCACCACTCC
TCCTTTCCGCCCCAAGTCGCGGGCTTGTCCTCCTCCTCCTTGTCCTCCTC
CTAGTCGCCTCGTCATGGCCTGCATCGGCCGCCTCGGCATTGACGGGCGT
GTCACAAGTTTCACAAGTTCTGGGCAAGAGCGCGTTGGGCCTAGCGCCGT
GGAAGATATTTGATTGCAACAGGGCGAGCAGCAGCAGTACCACTAGCAGC
ACCTCTAAGGCGGCGACGAAAGCCACAACATCGCCCGTGGTTGTGGCAAC
AGCAGCAACAGCAAGGGATTATAATTTATTTTATTTTCCTGCATTTCAAC
ATCAACGGGAGACGGAAGCCAAGATTTGCCGAGTCGAACCGTCCTCGACA
GCAGCTGCAGGAGCTATGAAGCTAACAACCCCCACCCGCAGTAGCAGCAC
CACCACTCCGAGAAGAAGAGACTCCTCATTCTCTTCCCTTCCTTCCCAAG
GCCGCGCTACCACCGCCGCCGCAGCCATACCCCCTCCCTCCGCCTCCCCT
CCTTCATTCCGCTTCCCCTTCTTCCGACCGAGCCTTCCGGCCCTTCACGT
CAACAAAACACTCACTTTTTGGGGAAATATGCTTGCGGGCGCCGTGTCCC
GCTCCTGCGCACAGACGGCAATGCACCCCGCCAATGTTGTCAAGACCTTG
CTGCAAACCAAGGGGTCAGCTGAGCTGAGTAATTTGAATTTTCAAATTTT
GACCCGGGGGGCCGGAGCCCAGTTCGCGCTGTCGTTGCCTCATGGGGCTT
TGGCTTTCGCAGTATTGGAGGCGACCAAGACAACTTTATCGAGCTGGTTT
CCTGTGGGATTTGCCGGTCCGGCGTTTGACTTCGTCTCGTCGGCCGTGAG
CACGACCTTGTGCTCGGTCATTAGCACGCCACAGATGGTGTTAACCGACA
GGATTATGGCGGGGTATTACCCTAACCTCATCAACGGGGTGTCGACGGTG
ATGAAGAGGGACGGGGTGCGAGGCCTATACGCGGGGTGGTTCGCGGCCTT
GGCGCAGAAAATCCCGAGCTATGGCTTAACTTGGGTGTTTTTCCAACAAC
TTAAATTGGCACGCACCCGGTGGTTGAATCATGAGGCGACCAATGCGGAG
AATTTCGGGATGGGGGCATTCGCGGCAGCAGCCACGGTGTGTGTTATGAT
TCCGCTGGACACGGTCAAGACAAGAATTGTCACGCAGGCGGCGAACCCGA
TGGCGGGCGTGCACTACAAGGGTGTGTTGGATTGTTTTACACGGGTGCTG
CGAGAGGAAGGCTTGAAGACGTTTTATGCCCCCCTGGCCCCGCGCCTGGT
CAGTGTGGTACCCATGATTGGTATCCAATTTGGTGTCTACGAGTTTATGA
AGCGGACCATTGCAGGCATGCCCGAGAAGCCACTCAGGGAGGGCGGAAGG
GAGGGAGGGATGGCGGCGGGGTGGGAGGGGATGAAGGCCTGGGCAAGAAG
GAGGGTGCCAAGTTTGGCCCCGGGATCTGAATCCCCCTTGTCCGAGCCGC
CTTTGAGTGAAATCTTTGATGAGATTGAGGATGCAAATTAGAGGAGGAGA
GGGGAGGGAGGGAGTGTCGCGTTTAAGAAAGTGCACGAGCAAATATACAT
ATATAGATAGAGAACGCATTGGAAACTAAAGAGGGGGAGGAAGAGAGGGA
GGAAAGGAGGGGGGAAAGTTGTCGAGGATCGATCGGTTTCCCTTTCCTAT
CATGGCGTAAGCTACTTGTTCCAGCACATATAAGAAAAATAGACAGTTAC
AGAGCTGTGAGCTCTCATTTCACACCTCGCTACGTCTCATAGCAGCAGAG
CGCGTGTATGCATGTCGTCTCTGTCATTCTGGTACCTCTCCCAATTTCTG
ATTCTCTTTTATGGCTTGTACAAGATTCCCCCCCTTATGGTAGGTGGTTG
TCCCTCCCTTTAGCCTCCCTCCTCTCCTCTCCTCTCCTCTACTTTCCAGG
CCTTCAAAGGCCACTGCCATCGCCCGCACCCTTCCTCCTTGACCACTAAC
ACCATCTCTGTATCACACACGCACACCGACAGGATCAGACGGCGCACATT
TAGACGAGTGTCAGCGTGCAACACCTGCGTCTCCAGCTTGAGCTCTCTCG
CCGACTCGCCCCCCGAACGGGTTCTTTTTCCCAGCTCACGCACAGTACGA
TGCAAGCTCATGATAATGTCGCCGCGACCAATGCACCTCGCACGCTAGGC
ACAGAGAAGTAAAATTACATACGTACATAAACGTGTCATGGCGCATCAGC
CGTCGCATTTGTTGGGGGCCCTCCATGAAGACACTCTGCGGCGTCTCCTC
GAGGTGCATGCTGCAGCCCAGTCTCCTCTACCACCTCCACCTCCGCCCCC
CTTACACCTTCAACCCCCCTCCTCACGCCCTTCATCATCGAAACGTCATG
CCAGCACCAGCAACAGTCGCAGCAGATTACGAGGCGAACACTTTTCCTCG
CCTTCACCGTCCTCTCCCGCCCCTACATTTTCCTCCACCAACCTCATCGA
AGTGGACCAAGAGCGCCGCGATTTAGAGGCTCGTACTTTGTCCTTGCGAC
GGGCCTTGCTGCGGACACATTTTCATATTCATGAAGTGCAGGACGAGGAG
CCACTACAACCACTTCCACTACCACCGCCACCACCCCAACCGCCAAGAGC
AAGCACTCTCGTCCCTCCCCCCCTTCCTACTTCCTCGCCACCTCTCTTCG
ATGACGACGTGGAAGGCCCTTATTCCGACGCATCTTACTCCGCCATTGCA
GCCGCAGCAGCTGCTGCTGTCGGGTGGGGATGGGCGCAGAAAAAGCAACG
TGCTGACAGGCACTGCGTTAGGGTTTTGGAGGGGCGCTCTCTGACCCGAT
GGTTGAAGTGGCTGCTGCACCGACGCTTGGCCAAAGAAAGAGAAAACGAG
ATTGGAGAGGCAATGACTTTCTACAAACAAGGACAGGCGCTGGCTCGCTT
TCGTCGACGGGCGAGTAATTCCCGCGTGCAGCACATGGCAATGCTCCGGG
TGGTCTTGATGGAAGGAGGAAGGGAGGGAGAAAGGGAGGGAGGAAGGGAG
GGAGAGCAAGAGCAGCCTTTACCCTCCTTTTCCTCTTCCGTTTTTAAATA
CCATCAACTACAACAGGAGATTTCCAATTCTTGTTTTCTCTTTGCTTCTC
TCACCACCACCTACACCCGCGCTGCCCTCCGCCTCCTCCTCACCAGGGGC
TTCCACCGCTTGCACCGGCATCACGTCACCTCAACCCACATTCGCTCCCT
CAAGCGCCACGCCATCCAAGATGCCCTCCTTCCTTCTCTCCTTCGCAAGG
GGCTTCAGGCTCTACGACGCAACAACAAGCAAGCCCGTCGGCGTCTCTTA
CATAAAAAAGCAGCAGACATGAGGAAGTACCAGCAGCTGCAGCAGCAGCA
GCGGGCACTACAGCAGTGGTGCGCGTGGAGAAATAGAAGAAGGAACCGGA
AGCTATTAATGAAGAAGGGAGAACTGTGGTGGGATTTGAGATTGAAAGAG
GGAGGGTTGCGAAGGTGGGGGGGAGGGTGGTGTGAGGCGAGGAGGGAGGG
AAGGAGGCTGGTGAGAGGGATGGATGCGTGGCATGAGCAGCGGCTGCAGC
AAAGGGGGGTAAAGACGTGGCTTTGTATGTTTGTAGTCCGTCGGGAGGAG
AGGAGGATGTTGAAGA back to topCoding sequence (CDS) from alignment at scaffold_13:635512..639277- >mRNA_5528 ID=mRNA_5528|Name=jgi.p|Nanoce1779_2|543251|organism=Nannochloropsis oceanica|type=CDS|length=1611bp|location=Sequence derived from alignment at scaffold_13:635512..639277- (Nannochloropsis oceanica)
ATGGCCGCTCCCACCGGTCACAGGCGACGGGTATCGTCGACCTGTTCCTC
AGGTATCTCGCCACCACTCCTCCTTTCCGCCCCAAGTCGCGGGCTTGTCC
TCCTCCTCCTTGTCCTCCTCCTAGTCGCCTCGTCATGGCCTGCATCGGCC
GCCTCGGCATTGACGGGCGTGTCACAAGTTTCACAAGTTCTGGGCAAGAG
CGCGTTGGGCCTAGCGCCGTGGAAGATATTTGATTGCAACAGGGCGAGCA
GCAGCAGTACCACTAGCAGCACCTCTAAGGCGGCGACGAAAGCCACAACA
TCGCCCGTGGTTGTGGCAACAGCAGCAACAGCAAGGGATTATAATTTATT
TTATTTTCCTGCATTTCAACATCAACGGGAGACGGAAGCCAAGATTTGCC
GAGTCGAACCGTCCTCGACAGCAGCTGCAGGAGCTATGAAGCTAACAACC
CCCACCCGCAGTAGCAGCACCACCACTCCGAGAAGAAGAGACTCCTCATT
CTCTTCCCTTCCTTCCCAAGGCCGCGCTACCACCGCCGCCGCAGCCATAC
CCCCTCCCTCCGCCTCCCCTCCTTCATTCCGCTTCCCCTTCTTCCGACCG
AGCCTTCCGGCCCTTCACGTCAACAAAACACTCACTTTTTGGGGAAATAT
GCTTGCGGGCGCCGTGTCCCGCTCCTGCGCACAGACGGCAATGCACCCCG
CCAATGTTGTCAAGACCTTGCTGCAAACCAAGGGGTCAGCTGAGCTGAGT
AATTTGAATTTTCAAATTTTGACCCGGGGGGCCGGAGCCCAGTTCGCGCT
GTCGTTGCCTCATGGGGCTTTGGCTTTCGCAGTATTGGAGGCGACCAAGA
CAACTTTATCGAGCTGGTTTCCTGTGGGATTTGCCGGTCCGGCGTTTGAC
TTCGTCTCGTCGGCCGTGAGCACGACCTTGTGCTCGGTCATTAGCACGCC
ACAGATGGTGTTAACCGACAGGATTATGGCGGGGTATTACCCTAACCTCA
TCAACGGGGTGTCGACGGTGATGAAGAGGGACGGGGTGCGAGGCCTATAC
GCGGGGTGGTTCGCGGCCTTGGCGCAGAAAATCCCGAGCTATGGCTTAAC
TTGGGTGTTTTTCCAACAACTTAAATTGGCACGCACCCGGTGGTTGAATC
ATGAGGCGACCAATGCGGAGAATTTCGGGATGGGGGCATTCGCGGCAGCA
GCCACGGTGTGTGTTATGATTCCGCTGGACACGGTCAAGACAAGAATTGT
CACGCAGGCGGCGAACCCGATGGCGGGCGTGCACTACAAGGGTGTGTTGG
ATTGTTTTACACGGGTGCTGCGAGAGGAAGGCTTGAAGACGTTTTATGCC
CCCCTGGCCCCGCGCCTGGTCAGTGTGGTACCCATGATTGGTATCCAATT
TGGTGTCTACGAGTTTATGAAGCGGACCATTGCAGGCATGCCCGAGAAGC
CACTCAGGGAGGGCGGAAGGGAGGGAGGGATGGCGGCGGGGTGGGAGGGG
ATGAAGGCCTGGGCAAGAAGGAGGGTGCCAAGTTTGGCCCCGGGATCTGA
ATCCCCCTTGTCCGAGCCGCCTTTGAGTGAAATCTTTGATGAGATTGAGG
ATGCAAATTAG back to top
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