jgi.p|Nanoce1779_2|592066, mRNA_5302 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592066
Unique NamemRNA_5302
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length561
Alignment locationscaffold_13:114490..115518 +

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Properties
Property NameValue
TranscriptId592152
TrackFilteredModels2
ProteinId592066
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:114490..115518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592066gene_5302Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592066mRNA_5302-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5302CDS_5302Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5302 ID=mRNA_5302|Name=jgi.p|Nanoce1779_2|592066|organism=Nannochloropsis oceanica|type=mRNA|length=561bp
CTGCTGCTGCTGCTGCTGCTGCTGGTGATGGTGGTGCTGCAAGAGCTTTC
TTCTCTGTCCCTCTTCTGCTTTCTCCTCCTTTGCCTTCCTCTTGTCTTCC
TCTCCCTCTCTTTTTGGTTCCTTTGTCTTATTTTCCCCCTACTTCTTGTT
CTTAGTCTTGAGCCCTATTATGTCTCTACCCTTCTCAATTTCATTCCTCC
TCTTCCTTCTCTTCTTCCTCCTCCTCCTCCATCTCCGTATCATTCTGCAC
CATCTCCTCCTTCTCCTTTCCACCTTACCAGGCACTATTATCAGAAGGCG
GACGGCCGTAGGAAGGGGGACCTGAATACCCTCCTCCCCCGCCGCGGGAG
GGCGGGCCACCATACCCGGTCGCGGGGGGGCCGCCGTAGCCGCCACCGCC
GCCATAGCTGCCACCACCGCCGCCATAGCCGGAGGATTGGGAGTAACCCC
CTCCTCCACCATATCCTCCGCCGCCACCGCTATAACCACCACCTTGGCCG
CCATATCTGTGAATCGAGGACGAGTGAGGATCGGAGGAGGAAGTAGGATT
GAGCCATAAGA
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protein sequence of jgi.p|Nanoce1779_2|592066

>mRNA_5302-protein ID=mRNA_5302-protein|Name=jgi.p|Nanoce1779_2|592066|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MVVLQELSSLSLFCFLLLCLPLVFLSLSFWFLCLIFPLLLVLSLEPYYVS
TLLNFIPPLPSLLPPPPPSPYHSAPSPPSPFHLTRHYYQKADGRRKGDLN
TLLPRRGRAGHHTRSRGGRRSRHRRHSCHHRRHSRRIGSNPLLHHILRRH
RYNHHLGRHICESRTSEDRRRK*
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mRNA from alignment at scaffold_13:114490..115518+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5302 ID=mRNA_5302|Name=jgi.p|Nanoce1779_2|592066|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp|location=Sequence derived from alignment at scaffold_13:114490..115518+ (Nannochloropsis oceanica)
CTGCTGCTGCTGCTGCTGCTGCTGGTGATGGTGGTGCTGCAAGAGCTTTC
TTCTCTGTCCCTCTTCTGCTTTCTCCTCCTTTGCCTTCCTCTTGTCTTCC
TCTCCCTCTCTTTTTGGTTCCTTTGTCTTATTTTCCCCCTACTTCTTGTT
CTTAGTCTTGAGCCCTATTATGTCTCTACCCTTCTCAATTTCATTCCTCC
TCTTCCTTCTCTTCTTCCTCCTCCTCCTCCATCTCCGTATCATTCTGCAC
CATCTCCTCCTTCTCCTTTCCACCTTACCAGGCACTATTATCAGAAGGCG
GACGGCCGTAGGAAGGGGGACCTGAATACCCTCCTCCCCCGCCGCGGGAG
GGCGGGCCACCATACCCGGTCGCGGGGGGGCCGCCGTAGCCGCCACCGCC
GCCATAGCTATTTTGGTTTCGTTTGAGGGAGAGAGGAATGGGGGGGGAAG
AACATAAGTGGGTGTGAGGATTGAGAAACGAGACGGACAGGGGGGGGGGG
GGGGATGGCAAAGATCGAGGAAAAGCACTGGGTGATAATATTATCAAAGC
ACAAATAATTGGACAGAATGTCAAACGGACAAGGAAAGATGACTCGCTGT
ACACAAAAAAATCCAGACAAATAGCATCAAAGCACGCGAAACATTTAAAG
TAAAAGTAAAGCGGAAAAAAACACGCGCAAGCAGGCACGAACGCCCTCAT
GCACGCACCTGCCACCACCGCCGCCATAGCCGGAGGATTGGGAGTAACCC
CCTCCTCCACCATATCTTTATGGGCGTGCGTGTGTTGTGTATGATTGTGT
GTGTGACCGAAGAGAGAAGGGGGTGAGCGACAGAGGGCTCGTATGAAAAC
GGACCCATCAGTCATACCACAAATGGAAATAATTCATGTGAGGGAAAGAG
GGGGAGGTGAAATTAGGGAGCGATGCACTTACCCTCCGCCGCCACCGCTA
TAACCACCACCTTGGCCGCCATATCTGTGAATCGAGGACGAGTGAGGATC
GGAGGAGGAAGTAGGATTGAGCCATAAGA
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Coding sequence (CDS) from alignment at scaffold_13:114490..115518+

>mRNA_5302 ID=mRNA_5302|Name=jgi.p|Nanoce1779_2|592066|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_13:114490..115518+ (Nannochloropsis oceanica)
ATGGTGGTGCTGCAAGAGCTTTCTTCTCTGTCCCTCTTCTGCTTTCTCCT
CCTTTGCCTTCCTCTTGTCTTCCTCTCCCTCTCTTTTTGGTTCCTTTGTC
TTATTTTCCCCCTACTTCTTGTTCTTAGTCTTGAGCCCTATTATGTCTCT
ACCCTTCTCAATTTCATTCCTCCTCTTCCTTCTCTTCTTCCTCCTCCTCC
TCCATCTCCGTATCATTCTGCACCATCTCCTCCTTCTCCTTTCCACCTTA
CCAGGCACTATTATCAGAAGGCGGACGGCCGTAGGAAGGGGGACCTGAAT
ACCCTCCTCCCCCGCCGCGGGAGGGCGGGCCACCATACCCGGTCGCGGGG
GGGCCGCCGTAGCCGCCACCGCCGCCATAGCTGCCACCACCGCCGCCATA
GCCGGAGGATTGGGAGTAACCCCCTCCTCCACCATATCCTCCGCCGCCAC
CGCTATAACCACCACCTTGGCCGCCATATCTGTGAATCGAGGACGAGTGA
GGATCGGAGGAGGAAGTAGATGGTGGTGCTGCAAGAGCTTTCTTCTCTGT
CCCTCTTCTGCTTTCTCCTCCTTTGCCTTCCTCTTGTCTTCCTCTCCCTC
TCTTTTTGGTTCCTTTGTCTTATTTTCCCCCTACTTCTTGTTCTTAGTCT
TGAGCCCTATTATGTCTCTACCCTTCTCAATTTCATTCCTCCTCTTCCTT
CTCTTCTTCCTCCTCCTCCTCCATCTCCGTATCATTCTGCACCATCTCCT
CCTTCTCCTTTCCACCTTACCAGGCACTATTATCAGAAGGCGGACGGCCG
TAGGAAGGGGGACCTGAATACCCTCCTCCCCCGCCGCGGGAGGGCGGGCC
ACCATACCCGGTCGCGGGGGGGCCGCCGTAGCCGCCACCGCCGCCATAGC
TGCCACCACCGCCGCCATAGCCGGAGGATTGGGAGTAACCCCCTCCTCCA
CCATATCCTCCGCCGCCACCGCTATAACCACCACCTTGGCCGCCATATCT
GTGAATCGAGGACGAGTGAGGATCGGAGGAGGAAGTAGATGGTGGTGCTG
CAAGAGCTTTCTTCTCTGTCCCTCTTCTGCTTTCTCCTCCTTTGCCTTCC
TCTTGTCTTCCTCTCCCTCTCTTTTTGGTTCCTTTGTCTTATTTTCCCCC
TACTTCTTGTTCTTAGTCTTGAGCCCTATTATGTCTCTACCCTTCTCAAT
TTCATTCCTCCTCTTCCTTCTCTTCTTCCTCCTCCTCCTCCATCTCCGTA
TCATTCTGCACCATCTCCTCCTTCTCCTTTCCACCTTACCAGGCACTATT
ATCAGAAGGCGGACGGCCGTAGGAAGGGGGACCTGAATACCCTCCTCCCC
CGCCGCGGGAGGGCGGGCCACCATACCCGGTCGCGGGGGGGCCGCCGTAG
CCGCCACCGCCGCCATAGCTGCCACCACCGCCGCCATAGCCGGAGGATTG
GGAGTAACCCCCTCCTCCACCATATCCTCCGCCGCCACCGCTATAACCAC
CACCTTGGCCGCCATATCTGTGAATCGAGGACGAGTGAGGATCGGAGGAG
GAAGTAG
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Synonyms
Publications