jgi.p|Nanoce1779_2|592396, mRNA_5395 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592396
Unique NamemRNA_5395
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1303
Alignment locationscaffold_13:333107..334409 +

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Properties
Property NameValue
TranscriptId592482
TrackFilteredModels2
ProteinId592396
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:333107..334409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592396gene_5395Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592396mRNA_5395-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5395CDS_5395Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5395 ID=mRNA_5395|Name=jgi.p|Nanoce1779_2|592396|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp
TTCTCTTCCTCCTCTTCTTCTTCCCCCCGCATTGGGTGCCTCATTCCATT
CTCTTGCTCCTGCGACTCATGTGCCTGTTGACGATATCGGCCGACGCGGT
TGTCTGAGAGCCGGAGCACCTTAGCCAACACATGATTAGTCATCGAACAA
GGCCCGACCCCCGATTGGAAAGCATCGAGGCACAAGCCTTGCCGCAAGTC
CACACCGCAAAGCTCCCTCAACGCGAGCTTTTCCGTTACGGACAACACTG
GAACTGTTAAGCTGCCGAAGCACTCTTCGAACACAGCCCGGGCTATACGC
TTGGAGGGAGAAGGGGATGGAGGCGTCTCGCATGAAGGAGAGGGCGGCGA
GGGAAGAAGCAATGGCATTGCGTCGGGGGCTGAAGGAGAAGCGACAGAAA
AGACAAATTCAGCCTGCGCAGAATTACCGAAATTATCGTTGACGTCCTTC
TCCTTAATCGTGGTGGTGGGCAAGGGCCGGATCGGCATGGAGAGAACAGG
TGCTGGCGGTGCAATGCCTTGCATCTTTGACACCTTTACTTCCAGGAAGA
GGGCATCGGGATTTCCCCTTTCCTTTTTCTCTATTTCCTTCTCGGTATCA
GCGTTCTCGGCTGGTAGCGCTGCAAAGTTCCCAGATGCGTCATCTTCCGG
AAAGTCCTTGTTTGGTGCCTCGAGTGCTTCCTCTTGGATCACCTGCTCCT
TGATCGGTGCAGACATTGGGTCAGACAACGGGAATGTACTTGGCTCGGAC
AGGGAAGTTACGCCCCCTCCCTCCTTATCCATTGTTGTTGGTGATACTCG
TACGTCAGCGAGGAGGAGGTCGGGATTGAATAAGAGAGCCCCACTTTCGT
CGATTGGTGCAAGCAAAGAACTCTTTGCAGCTTCTTCGCCTTCTTTTCCA
CCCTCCCGAGATGACGAAAGCTTCATGTGCGGGAGCGGGATATCAATACC
TACTGCTTCATCCTCTTTGTGGTTTGGACCTAGTGATGTATCCTGTCGAT
GGGAGGGGTTCGACGCAGCATCAAGAAGTTGGAGGCCACCTTCCTTCTCC
GACCCCTGCGATACATCTTTTTCCAATGCTTCCCTCTCGACTCGCATAGG
AGCCGCGGGCACTGAGATCAGCGGAGGAGCTTTTGCGAATCCCTGAAAGA
CATTGTCGTCATTGTCGCCGTCGTCATGATGATCATGCTGACGATTATGG
TGCTCTAGCGGTACTCTGACAGACGCTTCGATGGTGAGCTTCGGGCACGG
CAGCGCGGCTATGAGATCGGTGTCCGCCATGGCATGCGCGAAAGCTGTGG
TTT
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protein sequence of jgi.p|Nanoce1779_2|592396

>mRNA_5395-protein ID=mRNA_5395-protein|Name=jgi.p|Nanoce1779_2|592396|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MERTGAGGAMPCIFDTFTSRKRASGFPLSFFSISFSVSAFSAGSAAKFPD
ASSSGKSLFGASSASSWITCSLIGADIGSDNGNVLGSDREVTPPPSLSIV
VGDTRTSARRRSGLNKRAPLSSIGASKELFAASSPSFPPSRDDESFMCGS
GISIPTASSSLWFGPSDVSCRWEGFDAASRSWRPPSFSDPCDTSFSNASL
STRIGAAGTEISGGAFANP*
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mRNA from alignment at scaffold_13:333107..334409+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5395 ID=mRNA_5395|Name=jgi.p|Nanoce1779_2|592396|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp|location=Sequence derived from alignment at scaffold_13:333107..334409+ (Nannochloropsis oceanica)
TTCTCTTCCTCCTCTTCTTCTTCCCCCCGCATTGGGTGCCTCATTCCATT
CTCTTGCTCCTGCGACTCATGTGCCTGTTGACGATATCGGCCGACGCGGT
TGTCTGAGAGCCGGAGCACCTTAGCCAACACATGATTAGTCATCGAACAA
GGCCCGACCCCCGATTGGAAAGCATCGAGGCACAAGCCTTGCCGCAAGTC
CACACCGCAAAGCTCCCTCAACGCGAGCTTTTCCGTTACGGACAACACTG
GAACTGTTAAGCTGCCGAAGCACTCTTCGAACACAGCCCGGGCTATACGC
TTGGAGGGAGAAGGGGATGGAGGCGTCTCGCATGAAGGAGAGGGCGGCGA
GGGAAGAAGCAATGGCATTGCGTCGGGGGCTGAAGGAGAAGCGACAGAAA
AGACAAATTCAGCCTGCGCAGAATTACCGAAATTATCGTTGACGTCCTTC
TCCTTAATCGTGGTGGTGGGCAAGGGCCGGATCGGCATGGAGAGAACAGG
TGCTGGCGGTGCAATGCCTTGCATCTTTGACACCTTTACTTCCAGGAAGA
GGGCATCGGGATTTCCCCTTTCCTTTTTCTCTATTTCCTTCTCGGTATCA
GCGTTCTCGGCTGGTAGCGCTGCAAAGTTCCCAGATGCGTCATCTTCCGG
AAAGTCCTTGTTTGGTGCCTCGAGTGCTTCCTCTTGGATCACCTGCTCCT
TGATCGGTGCAGACATTGGGTCAGACAACGGGAATGTACTTGGCTCGGAC
AGGGAAGTTACGCCCCCTCCCTCCTTATCCATTGTTGTTGGTGATACTCG
TACGTCAGCGAGGAGGAGGTCGGGATTGAATAAGAGAGCCCCACTTTCGT
CGATTGGTGCAAGCAAAGAACTCTTTGCAGCTTCTTCGCCTTCTTTTCCA
CCCTCCCGAGATGACGAAAGCTTCATGTGCGGGAGCGGGATATCAATACC
TACTGCTTCATCCTCTTTGTGGTTTGGACCTAGTGATGTATCCTGTCGAT
GGGAGGGGTTCGACGCAGCATCAAGAAGTTGGAGGCCACCTTCCTTCTCC
GACCCCTGCGATACATCTTTTTCCAATGCTTCCCTCTCGACTCGCATAGG
AGCCGCGGGCACTGAGATCAGCGGAGGAGCTTTTGCGAATCCCTGAAAGA
CATTGTCGTCATTGTCGCCGTCGTCATGATGATCATGCTGACGATTATGG
TGCTCTAGCGGTACTCTGACAGACGCTTCGATGGTGAGCTTCGGGCACGG
CAGCGCGGCTATGAGATCGGTGTCCGCCATGGCATGCGCGAAAGCTGTGG
TTT
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Coding sequence (CDS) from alignment at scaffold_13:333107..334409+

>mRNA_5395 ID=mRNA_5395|Name=jgi.p|Nanoce1779_2|592396|organism=Nannochloropsis oceanica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_13:333107..334409+ (Nannochloropsis oceanica)
ATGGAGAGAACAGGTGCTGGCGGTGCAATGCCTTGCATCTTTGACACCTT
TACTTCCAGGAAGAGGGCATCGGGATTTCCCCTTTCCTTTTTCTCTATTT
CCTTCTCGGTATCAGCGTTCTCGGCTGGTAGCGCTGCAAAGTTCCCAGAT
GCGTCATCTTCCGGAAAGTCCTTGTTTGGTGCCTCGAGTGCTTCCTCTTG
GATCACCTGCTCCTTGATCGGTGCAGACATTGGGTCAGACAACGGGAATG
TACTTGGCTCGGACAGGGAAGTTACGCCCCCTCCCTCCTTATCCATTGTT
GTTGGTGATACTCGTACGTCAGCGAGGAGGAGGTCGGGATTGAATAAGAG
AGCCCCACTTTCGTCGATTGGTGCAAGCAAAGAACTCTTTGCAGCTTCTT
CGCCTTCTTTTCCACCCTCCCGAGATGACGAAAGCTTCATGTGCGGGAGC
GGGATATCAATACCTACTGCTTCATCCTCTTTGTGGTTTGGACCTAGTGA
TGTATCCTGTCGATGGGAGGGGTTCGACGCAGCATCAAGAAGTTGGAGGC
CACCTTCCTTCTCCGACCCCTGCGATACATCTTTTTCCAATGCTTCCCTC
TCGACTCGCATAGGAGCCGCGGGCACTGAGATCAGCGGAGGAGCTTTTGC
GAATCCCTGA
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Synonyms
Publications