jgi.p|Nanoce1779_2|592860, mRNA_5535 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592860
Unique NamemRNA_5535
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1718
Alignment locationscaffold_13:655427..657637 -

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Properties
Property NameValue
TranscriptId592946
TrackFilteredModels2
ProteinId592860
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:655427..657637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592860gene_5535Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592860mRNA_5535-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5535CDS_5535Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5535 ID=mRNA_5535|Name=jgi.p|Nanoce1779_2|592860|organism=Nannochloropsis oceanica|type=mRNA|length=1718bp
CCCCCGAGAACAGTCAAGTCCCCCGTGCCTGAATATTGCGCCGCAATTGA
AAAGGAGCTCACGTCCAATGCTGTCAAAATCTGCACCCCGCCGGCCACGA
AGAAGGCTTGCCCCACCCCATTCGTCAAGACAAATCCATTAATCTCAAGG
AACTGGCAGAAGGTAAACAAACTCACCCCCCCGAGCATGGCAACATTGAA
TCCGGCCCCTGCTTCACCCGCGAACCACGTGGTATATATCCAGGTGCACC
CGATGAAGGACAACTCACCTCCCAGCACCAAGATGTCCCCCCCTATGTAC
AGACGGTCATTCGTGGCTATCACCTCGTAGTCATAGAATAAGCACCCAAC
GAATTGTATCCTTCCCGCCACCGCCATGACGAAACCCCCGTAGATCCGCA
CGCTTACAAGAGCTTCGTTCAACAGGATAATCAATTCGATTTCCTCTTGA
CCGCTCATATCATCTTCAAACATGACCCCGACGAAGTTACCGCCCAACGC
CCCATATTCAAATAAAACAGTGCCTCCCCGTGATTCTAACACCTCTCCTG
TGGGGGGTATCCCCTCCAAAATCGGTATTGGGGCTCTGTATTCACCCGTG
CCTTGGTTAATATGCACATGGCGCATTTCAAGGTACCCACCGGCGATAAC
CCGGAAGCAACGCACGGTGTCAAAGCAGTCAATAAACGGGATCTCCAGCG
GGTTTCCCTGAAGGACAATGTGCCGGTCAATTATGATCTCATTCGCCAGC
CGGTAAGGATTAGATGGTCTATTGAAGCTCTCTCCGAGGTTGACATAGAA
GCAGGTGCCATTCACGATTTCTTGTTCCAATTCGGCCGCGTCTGAAGGCC
AGCACCACTCCCCTTCCGTGGAGTCGCGCCAGTGGTCCGTGAACTTGTCA
GAAAGGGAGGATGCGAAGGCGAACGTGTTTGAAGCAGCAGCAGCAGCGTT
GCCGCTGGTGGTATTGAGCAGGTCGGCGAGGGAGGGATGGGGGGGAGGGA
GGGAATAAGGGAGGAGGTGGATCTTGTCCGAAGGGCCGTCGACGTTAACA
GCGGGTTTACTGATGGGAGACATGGTGGTAGTGATGGTGGTGGTGGTGTC
GGTGGTGGTGGAGTCGCTGTCCCCCCGGAATTCAGGGACGAATGAATTGC
TCCCGTCGTCTTTTCCCGGGTGGGTGATGGAGTGGGAATGCTCCTTGTCG
CTGCTGGTGGTGATAAGCGGAGAGGGGGAAATGGATTCTTTTATTCTTGA
GGGAGATGCGGCCTCAAAATGCATCACCGAGCCCACAATTACAGCGCTCG
CTACCACTATCAACATGATACCTAGCCACCACCGCACTCCCCGTCGTCTT
CCTACATATCCTGTTGGTTCTACTGATATTCCGTTTATTCTTTCTACTGC
TTCTCCTGCACTGGCCCCGTCGCTGCTGCCAGGCGCGACTGTCTCTACTG
TCGCCGTCGTGGCCACCATCACCTTGTCCCCTCCACCTCCCTTCTCTTCT
CCCCGTTCCTGAGGGCCTTGGGATTGGGACAAGTCCATCTTGCTGGTGAC
CCTGCGGCCTTACTGCTCCTGGGATGTCCGGCTTTCTCCATACACGCACC
AAGTGCCGCCGTGTTGCTCCTCTCCTTGGGTTTGACTGGTCTTCTGCCTC
TGGTCGGATTATAAATGGCCTTGGTCAAAGCCCCTTATCCCGCCGCCATT
CAGAAAGGTGTGCCTGTT
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protein sequence of jgi.p|Nanoce1779_2|592860

>mRNA_5535-protein ID=mRNA_5535-protein|Name=jgi.p|Nanoce1779_2|592860|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MGDMVVVMVVVVSVVVESLSPRNSGTNELLPSSFPGWVMEWECSLSLLVV
ISGEGEMDSFILEGDAASKCITEPTITALATTINMIPSHHRTPRRLPTYP
VGSTDIPFILSTASPALAPSLLPGATVSTVAVVATITLSPPPPFSSPRS*
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mRNA from alignment at scaffold_13:655427..657637-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5535 ID=mRNA_5535|Name=jgi.p|Nanoce1779_2|592860|organism=Nannochloropsis oceanica|type=mRNA|length=2211bp|location=Sequence derived from alignment at scaffold_13:655427..657637- (Nannochloropsis oceanica)
CCCCCGAGAACAGTCAAGTCCCCCGTGCCTGAATATTGCGCCGCAATTGA
AAAGGAGCTCACGTCCAATGCTGTCAAAATCTGCACCCCGCCGGCCACGA
AGAAGGCTTGCCCCACCCCATTCGTCAAGACAAATCCATTAATCTCAAGG
AACTGGCAGAAGGTAAACAAACTCACCCCCCCGAGCATGGCAACATTGAA
TCCGGCCCCTGCTTCACCCGCGAACCACGTGGTATATATCCAGGTGCACC
CGATGAAGGACAACTCACCTCCCAGCACCAAGATGTCCCCCCCTATGTAC
AGACGGTCATTCGTGGCTATCACCTCGTAGTCATAGAATAAGCACCCAAC
GAATTGTATCCTTCCCGCCACCGCCATGACGAAACCCCCGTAGATCCGCA
CGCTTACAAGAGCTTCGTTCAACAGGATAATCAATTCGATTTCCTCTTGA
CCGCTCATATCATCTTCAAACATGACCCCGACGAAGTTACCGCCCAACGC
CCCATATTCAAATAAAACAGTGCCTCCCCGTGATTCTAACACCTCTCCTG
TGGGGGGTATCCCCTCCAAAATCGGTATTGGGGCTCTGTATTCACCCGTG
CCTTGGTTAATATGCACATGGCGCATTTCAAGGTACCCACCGGCGATAAC
CCGGAAGCAACGCACGGTGTCAAAGCAGTCAATAAACGGGATCTCCAGCG
GGTTTCCCTGAAGGACAATGTGCCGGTCAATTATGATCTCATTCGCCAGC
CGGTAAGGATTAGATGGTCTATTGAAGCTCTCTCCGAGGTTGACATAGAA
GCAGGTGCCATTCACGATTTCTTGTTCCAATTCGGCCGCGTCTGAAGGCC
AGCACCACTCCCCTTCCGTGGAGTCGCGCCAGTGGTCCGTGAACTTGTCA
GAAAGGGAGGATGCGAAGGCGAACGTGTTTGAAGCAGCAGCAGCAGCGTT
GCCGCTGGTGGTATTGAGCAGGTCGGCGAGGGAGGGATGGGGGGGAGGGA
GGGAATAAGGGAGGAGGTGGATCTTGTCCGAAGGGCCGTCGACGTTAACA
GCGGGTTTACTGATGGGAGACATGGTGGTAGTGATGGTGGTGGTGGTGTC
GGTGGTGGTGGTGTCGGTGGTGGTGGAGTCGCTGTCCCCCCGGAATTCAG
GGACGAATGAATTGCTCCCGTCGTCTTTTCCCGGGTGGGTGATGGAGTGG
GAATGCTCCTGGAGAGAAGGAAGGAGGGAGGGAGGGTAAGGTCGTGTGTT
TGAATGGTATTCATCATCATGTTCCCGAGGGTACATGGTCATGGAGAGGA
GAGAGGGTTGGGTAGAAGGGGTTAAGGTGAGGTGCCAGGACATAGAAAAG
GACCGGTCATACGGACACCAAGTTACCTTGTCGCTGCTGGTGGTGATAAG
CGGAGAGGGGGAAATGGATTCTTTTATTCTTGAGGGAGATGCGGCCTGTG
AAGGATAGGGAAAAAAAGGGGGGGGGGGGGGTATACAGGGTGTATGTCTA
CGTTGGTGGCTTGGTATATGAACCACATGTCCCAAAATGCCTTTACATGA
AGAGGAAAAGGCACGAGGCACGATGACTGACGACCTCCAACGGTTGAAAC
CTCGATAATAATGCCCACTCCCTATTGCAATCATGTCCAGGACTGGAATG
AAAGCATTCTCATCCACATGGATACATAATTGCAGATAATATAAGAATCA
GTTCACTGCTCCCCTCCACCCTTCCCCCCTTGCCTCTAATCCTCCCTACA
CGGACCTCAAAATGCATCACCGAGCCCACAATTACAGCGCTCGCTACCAC
TATCAACATGATACCTAGCCACCACCGCACTCCCCGTCGTCTTCCTACAT
ATCCTGTTGGTTCTACTGATATTCCGTTTATTCTTTCTACTGCTTCTCCT
GCACTGGCCCCGTCGCTGCTGCCAGGCGCGACTGTCTCTACTGTCGCCGT
CGTGGCCACCATCACCTTGTCCCCTCCACCTCCCTTCTCTTCTCCCCGTT
CCTGAGGGCCTTGGGATTGGGACAAGTCCATCTTGCTGGTGACCCTGCGG
CCTTACTGCTCCTGGGATGTCCGGCTTTCTCCATACACGCACCAAGTGCC
GCCGTGTTGCTCCTCTCCTTGGGTTTGACTGGTCTTCTGCCTCTGGTCGG
ATTATAAATGGCCTTGGTCAAAGCCCCTTATCCCGCCGCCATTCAGAAAG
GTGTGCCTGTT
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Coding sequence (CDS) from alignment at scaffold_13:655427..657637-

>mRNA_5535 ID=mRNA_5535|Name=jgi.p|Nanoce1779_2|592860|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at scaffold_13:655427..657637- (Nannochloropsis oceanica)
CTCAAAATGCATCACCGAGCCCACAATTACAGCGCTCGCTACCACTATCA
ACATGATACCTAGCCACCACCGCACTCCCCGTCGTCTTCCTACATATCCT
GTTGGTTCTACTGATATTCCGTTTATTCTTTCTACTGCTTCTCCTGCACT
GGCCCCGTCGCTGCTGCCAGGCGCGACTGTCTCTACTGTCGCCGTCGTGG
CCACCATCACCTTGTCCCCTCCACCTCCCTTCTCTTCTCCCCGTTCCTGA
CTTGTCGCTGCTGGTGGTGATAAGCGGAGAGGGGGAAATGGATTCTTTTA
TTCTTGAGGGAGATGCGGCGTGGTGGAGTCGCTGTCCCCCCGGAATTCAG
GGACGAATGAATTGCTCCCGTCGTCTTTTCCCGGGTGGGTGATGGAGTGG
GAATGCTCATGGGAGACATGGTGGTAGTGATGGTGGTGGTGGTGTCGGTG
CTCAAAATGCATCACCGAGCCCACAATTACAGCGCTCGCTACCACTATCA
ACATGATACCTAGCCACCACCGCACTCCCCGTCGTCTTCCTACATATCCT
GTTGGTTCTACTGATATTCCGTTTATTCTTTCTACTGCTTCTCCTGCACT
GGCCCCGTCGCTGCTGCCAGGCGCGACTGTCTCTACTGTCGCCGTCGTGG
CCACCATCACCTTGTCCCCTCCACCTCCCTTCTCTTCTCCCCGTTCCTGA
CTTGTCGCTGCTGGTGGTGATAAGCGGAGAGGGGGAAATGGATTCTTTTA
TTCTTGAGGGAGATGCGGCGTGGTGGAGTCGCTGTCCCCCCGGAATTCAG
GGACGAATGAATTGCTCCCGTCGTCTTTTCCCGGGTGGGTGATGGAGTGG
GAATGCTCATGGGAGACATGGTGGTAGTGATGGTGGTGGTGGTGTCGGTG
CTCAAAATGCATCACCGAGCCCACAATTACAGCGCTCGCTACCACTATCA
ACATGATACCTAGCCACCACCGCACTCCCCGTCGTCTTCCTACATATCCT
GTTGGTTCTACTGATATTCCGTTTATTCTTTCTACTGCTTCTCCTGCACT
GGCCCCGTCGCTGCTGCCAGGCGCGACTGTCTCTACTGTCGCCGTCGTGG
CCACCATCACCTTGTCCCCTCCACCTCCCTTCTCTTCTCCCCGTTCCTGA
CTTGTCGCTGCTGGTGGTGATAAGCGGAGAGGGGGAAATGGATTCTTTTA
TTCTTGAGGGAGATGCGGCGTGGTGGAGTCGCTGTCCCCCCGGAATTCAG
GGACGAATGAATTGCTCCCGTCGTCTTTTCCCGGGTGGGTGATGGAGTGG
GAATGCTCATGGGAGACATGGTGGTAGTGATGGTGGTGGTGGTGTCGGTG
CTCAAAATGCATCACCGAGCCCACAATTACAGCGCTCGCTACCACTATCA
ACATGATACCTAGCCACCACCGCACTCCCCGTCGTCTTCCTACATATCCT
GTTGGTTCTACTGATATTCCGTTTATTCTTTCTACTGCTTCTCCTGCACT
GGCCCCGTCGCTGCTGCCAGGCGCGACTGTCTCTACTGTCGCCGTCGTGG
CCACCATCACCTTGTCCCCTCCACCTCCCTTCTCTTCTCCCCGTTCCTGA
CTTGTCGCTGCTGGTGGTGATAAGCGGAGAGGGGGAAATGGATTCTTTTA
TTCTTGAGGGAGATGCGGCGTGGTGGAGTCGCTGTCCCCCCGGAATTCAG
GGACGAATGAATTGCTCCCGTCGTCTTTTCCCGGGTGGGTGATGGAGTGG
GAATGCTCATGGGAGACATGGTGGTAGTGATGGTGGTGGTGGTGTCGGTG
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Synonyms
Publications