jgi.p|Nanoce1779_2|631559, mRNA_6438 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631559
Unique NamemRNA_6438
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1042
Alignment locationscaffold_15:641526..643004 +

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Properties
Property NameValue
TranscriptId631645
TrackFilteredModels2
ProteinId631559
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:641526..643004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631559gene_6438Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631559mRNA_6438-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6438CDS_6438Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6438 ID=mRNA_6438|Name=jgi.p|Nanoce1779_2|631559|organism=Nannochloropsis oceanica|type=mRNA|length=1042bp
CCCGGGACCTTTAATGAAAGCACAACATAGTTTGTAATCTTTTTCCCCCA
GACACCACATGACTGGGCACACATTTTCCCAGCCTTTTCCTTCTGTCCTG
GTGTTAGTGCCTACTCTGTGTATCTTTTGGACCAACCGAATGTTCTGTTC
TACATTGTGCATGTGTAGGCTGTCTCATTGACTTCGTGCTCCTCGCCACC
CACACTCACGTCCTATACATTGTACCATCGCGCCATAGCACCGCCCCTCG
TTTGTTGGGCTTTTGTCGCAAGACGGAGACAGACACGATTTTACTCCCAC
AAGCCACTATGGCTCCAGAAATACCCCCACACCACACGGGTGTGTCTTCT
CACTGGACGTCCACAGCACCCACGGGCGTCTCATTTCTTCCCTTTCCCTC
CCTTTCATTTCCCGTGCACATGCCCATGCCCACCACAGCAGAACCCGAAG
TCTCAAGACTCAAGAACAAATCAACCAAGCCTACAACCCAACAACCATGG
CTCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGACCCG
TTTGCCGACTTCTTTAGCACCGGAGGCGGGTGGCTTGCCCCCAGCGGCGT
GGGAGGCGGGGCTTTGACCAGTGGTGGCATGGGCCGCGGACAAGCTATCG
TGCCCAACCTGAGCCTGGATGTGAAGGAGAAAAACAACGAGTTTGAGGTC
GCTGTTGATGCGCCGGGCATGAAGAAGGAAGACTTCGATGTGACGTTCGA
GAACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGAAGGAGGAAG
AGGACGCACGTTGGCACATTTCCGAGCGGCGCTGGGGCTCTTGCTCCCGC
TCTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAACATCAAGGCCGAATA
TGACGCGGGCGTTCTTAAGATCCACGTGCCTAAGACGCAGAAGAGCGAGA
CCCGCAAGGCCATTCGTGTGGAGTAGAGGAGAGAGTGAGAACAGAGAGAG
AGAGAGAGGGGAGAGAGAGAAAGAGAGAGGGAGAGGGAGAGG
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protein sequence of jgi.p|Nanoce1779_2|631559

>mRNA_6438-protein ID=mRNA_6438-protein|Name=jgi.p|Nanoce1779_2|631559|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MALSRFDPFGSMLTERDPFADFFSTGGGWLAPSGVGGGALTSGGMGRGQA
IVPNLSLDVKEKNNEFEVAVDAPGMKKEDFDVTFENNVLRVACERKEEKE
EEDARWHISERRWGSCSRSVRLPRAAGCENIKAEYDAGVLKIHVPKTQKS
ETRKAIRVE*
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mRNA from alignment at scaffold_15:641526..643004+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6438 ID=mRNA_6438|Name=jgi.p|Nanoce1779_2|631559|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp|location=Sequence derived from alignment at scaffold_15:641526..643004+ (Nannochloropsis oceanica)
CCCGGGACCTTTAATGAAAGCACAACATAGTTTGTAATCTTTTTCCCCCA
GACACCACATGACTGGGCACACATTTTCCCAGCCTTTTCCTTCTGTCCTG
GTGTTAGTGCCTACTCTGTGTATCTTTTGGACCAACCGAATGTTCTGTTC
TACATTGTGCATGTGTAGGCTGTCTCATTGACTTCGTGCTCCTCGCCACC
CACACTCACGTCCTATACATTGTACCATCGCGCCATAGCACCGCCCCTCG
TTTGTTGGGCTTTTGTCGCAAGACGGAGACAGACACGATTTTACTCCCAC
AAGCCACTATGGCTCCAGAAATACCCCCACACCACACGGGTGTGTCTTCT
CACTGGACGTCCACAGCACCCACGGGCGTCTCATTTCTTCCCTTTCCCTC
CCTTTCATTTCCCGTGCACATGCCCATGCCCACCACAGCAGAACCCGAAG
TCTCAAGACTCAAGAACAAATCAACCAAGCCTACAACCCAACAACCATGG
CTCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGACCCG
TTTGCCGACTTCTTTAGCACCGGAGGTAAGTATTCAGGAGGGAAGGAAGG
TGGAAGTGGAGAGGAGGCGGCGGTAGGCAGGGATGGATGGCGGGAGGAAG
ATCTCGAAACTGAAGGAAGAGGTCACCTTTCTTTCTATAGCTGACCAGGC
ACCGGCCTCACATCCATCTTCCACCTCTCCTACACCCACCTACCCTCTCT
TTCTACACAGGCGGGTGGCTTGCCCCCAGCGGCGTGGGAGGCGGGGCTTT
GACCAGTGGTGGCATGGGCCGCGGACAAGCTATCGTGCCCAACCTGAGCC
TGGATGTGAAGGAGAAAAACAACGAGTTTGAGGTCGCTGTTGATGCGCCG
GGCATGAAGAAGGAAGGTATGTTGGCGTTGTGGCTGAAGGGAGTGGTGAG
GATGCTGTCTTGCCTGTTGTCTTCCTTCTGTCGTTCTTTCCTTATATCCT
TACACCCACCCTCGCTTTCTCCCTTCCACTCTGGTTCCAGACTTCGATGT
GACGTTCGAGAACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGA
AGGAGGAAGAGGACGCACGTTGGCACATTTCCGAGCGGCGCTGGGGCTCT
TGCTCCCGCTCTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAACATCAA
GGCCGAATATGACGCGGGCGTTCTTAAGGTAAAGAGGATGAGAGGGAAGA
AGGCAGAGAGGGAGGGAGGGAAGAAGGGAGAGAGACAGGATGAAGCCTTT
GATTCTCACACCACTTTCGAATTCTTTCCTCCCATTCCCTCTTTCCCCCC
CTCTAGATCCACGTGCCTAAGACGCAGAAGAGCGAGACCCGCAAGGCCAT
TCGTGTGGAGTAGAGGAGAGAGTGAGAACAGAGAGAGAGAGAGAGGGGAG
AGAGAGAAAGAGAGAGGGAGAGGGAGAGG
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Coding sequence (CDS) from alignment at scaffold_15:641526..643004+

>mRNA_6438 ID=mRNA_6438|Name=jgi.p|Nanoce1779_2|631559|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_15:641526..643004+ (Nannochloropsis oceanica)
ATGGCTCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGA
CCCGTTTGCCGACTTCTTTAGCACCGGAGGCGGGTGGCTTGCCCCCAGCG
GCGTGGGAGGCGGGGCTTTGACCAGTGGTGGCATGGGCCGCGGACAAGCT
ATCGTGCCCAACCTGAGCCTGGATGTGAAGGAGAAAAACAACGAGTTTGA
GGTCGCTGTTGATGCGCCGGGCATGAAGAAGGAAGACTTCGATGTGACGT
TCGAGAACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGAAGGAG
GAAGAGGACGCACGTTGGCACATTTCCGAGCGGCGCTGGGGCTCTTGCTC
CCGCTCTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAACATCAAGGCCG
AATATGACGCGGGCGTTCTTAAGATCCACGTGCCTAAGACGCAGAAGAGC
GAGACCCGCAAGGCCATTCGTGTGGAGTAGATGGCTCTCTCTCGCTTCGA
CCCCTTTGGATCCATGCTCACCGAGCGCGACCCGTTTGCCGACTTCTTTA
GCACCGGAGGCGGGTGGCTTGCCCCCAGCGGCGTGGGAGGCGGGGCTTTG
ACCAGTGGTGGCATGGGCCGCGGACAAGCTATCGTGCCCAACCTGAGCCT
GGATGTGAAGGAGAAAAACAACGAGTTTGAGGTCGCTGTTGATGCGCCGG
GCATGAAGAAGGAAGACTTCGATGTGACGTTCGAGAACAACGTTCTGCGT
GTGGCGTGTGAGCGCAAGGAGGAGAAGGAGGAAGAGGACGCACGTTGGCA
CATTTCCGAGCGGCGCTGGGGCTCTTGCTCCCGCTCTGTTCGCCTTCCTC
GTGCCGCTGGCTGCGAGAACATCAAGGCCGAATATGACGCGGGCGTTCTT
AAGATCCACGTGCCTAAGACGCAGAAGAGCGAGACCCGCAAGGCCATTCG
TGTGGAGTAGATGGCTCTCTCTCGCTTCGACCCCTTTGGATCCATGCTCA
CCGAGCGCGACCCGTTTGCCGACTTCTTTAGCACCGGAGGCGGGTGGCTT
GCCCCCAGCGGCGTGGGAGGCGGGGCTTTGACCAGTGGTGGCATGGGCCG
CGGACAAGCTATCGTGCCCAACCTGAGCCTGGATGTGAAGGAGAAAAACA
ACGAGTTTGAGGTCGCTGTTGATGCGCCGGGCATGAAGAAGGAAGACTTC
GATGTGACGTTCGAGAACAACGTTCTGCGTGTGGCGTGTGAGCGCAAGGA
GGAGAAGGAGGAAGAGGACGCACGTTGGCACATTTCCGAGCGGCGCTGGG
GCTCTTGCTCCCGCTCTGTTCGCCTTCCTCGTGCCGCTGGCTGCGAGAAC
ATCAAGGCCGAATATGACGCGGGCGTTCTTAAGATCCACGTGCCTAAGAC
GCAGAAGAGCGAGACCCGCAAGGCCATTCGTGTGGAGTAGATGGCTCTCT
CTCGCTTCGACCCCTTTGGATCCATGCTCACCGAGCGCGACCCGTTTGCC
GACTTCTTTAGCACCGGAGGCGGGTGGCTTGCCCCCAGCGGCGTGGGAGG
CGGGGCTTTGACCAGTGGTGGCATGGGCCGCGGACAAGCTATCGTGCCCA
ACCTGAGCCTGGATGTGAAGGAGAAAAACAACGAGTTTGAGGTCGCTGTT
GATGCGCCGGGCATGAAGAAGGAAGACTTCGATGTGACGTTCGAGAACAA
CGTTCTGCGTGTGGCGTGTGAGCGCAAGGAGGAGAAGGAGGAAGAGGACG
CACGTTGGCACATTTCCGAGCGGCGCTGGGGCTCTTGCTCCCGCTCTGTT
CGCCTTCCTCGTGCCGCTGGCTGCGAGAACATCAAGGCCGAATATGACGC
GGGCGTTCTTAAGATCCACGTGCCTAAGACGCAGAAGAGCGAGACCCGCA
AGGCCATTCGTGTGGAGTAG
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Synonyms
Publications