jgi.p|Nanoce1779_2|596311, mRNA_6785 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596311
Unique NamemRNA_6785
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length578
Alignment locationscaffold_17:91530..92430 +

Link to JBrowse

Properties
Property NameValue
TranscriptId596397
TrackFilteredModels2
ProteinId596311
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:91530..92430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596311gene_6785Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596311mRNA_6785-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6785CDS_6785Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6785 ID=mRNA_6785|Name=jgi.p|Nanoce1779_2|596311|organism=Nannochloropsis oceanica|type=mRNA|length=578bp
CAGTAACCTCAGTACGCATCGTCGGCATGGCCATCACGCTGCTGGAGCCT
CCGTCGCCGTATTTGCTACCGCTCCTTTTCTTTGTAATTCTGTTCGAGGC
ACTTCTAATCTTGGGCAAAAAGCAACGGTGTAAACCCGTAGCCCTGAATA
TCAAGGCTTTGACCTTGCGCAAGTACGAGCTGGCGGTGGCCATGAAAGGG
CTCGGCATTCCGGACTTCGTAGAAAAATCCAAACTGGAGCGCGAGCTCAT
CCAAGTAGACAAGAACCTGGCCCCACAGAAGGAACGGGTGCTCGCCCAGG
CCACTGCATACGAGACCGTCGCAACCAAAGTCCGATACGGGGTTTATGCT
ATGCTGGTGGCGATTTTCTGGCGGACGCCACTTTTGGTCATGACCCCGGC
AGCCACCTGGCCTTTGTCTTCCTTTTTTGGCTTTCCACGCTTGGGACCAG
GGGCAGTGGGGGTGGCGGCGACGATTTCTATGGTCAAGGCAGTGTTGAAG
CCACTGACACCCTTGTTGAGTACCGTATAAATAGATAGAAAGGAAGCAAA
GTAAATCAAAGATACATCAAGTAAAGAA
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protein sequence of jgi.p|Nanoce1779_2|596311

>mRNA_6785-protein ID=mRNA_6785-protein|Name=jgi.p|Nanoce1779_2|596311|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MAITLLEPPSPYLLPLLFFVILFEALLILGKKQRCKPVALNIKALTLRKY
ELAVAMKGLGIPDFVEKSKLERELIQVDKNLAPQKERVLAQATAYETVAT
KVRYGVYAMLVAIFWRTPLLVMTPAATWPLSSFFGFPRLGPGAVGVAATI
SMVKAVLKPLTPLLSTV*
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mRNA from alignment at scaffold_17:91530..92430+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6785 ID=mRNA_6785|Name=jgi.p|Nanoce1779_2|596311|organism=Nannochloropsis oceanica|type=mRNA|length=901bp|location=Sequence derived from alignment at scaffold_17:91530..92430+ (Nannochloropsis oceanica)
CAGTAACCTCAGTACGCATCGTCGGCATGGCCATCACGCTGCTGGAGCCT
CCGTCGCCGTATTTGCTACCGCTCCTTTTCTTTGTAATTCTGTTCGAGGC
ACTTCTAATCTTGGGCAAAAAGCAACGGTGTAAACCCGTAGCCCTGAATA
TCAAGGCTTTGACCTTGCGCAAGTACGAGCTGGCGGTGGCCATGAAAGGG
GTAAGTGCTCGGAGAAGGCGTGGACAGGACGGCGGGCATGATGGTGCGTG
GTTCTGGAGGCGAGGCGTGTTATATGGTTTACATCGGCCACCTACTTCTA
CCCCTGGTCTCACGCCTCAGCGACCTATCCACACACCCCTGCTGCGTTAG
CCCCACTCGGTAGGAGCTAATGAAAAGGTGCCGGAAGATCTCATCCTTTG
GGTACTCCATCCCTCTGCCAAACCGCAGTGACTGCGCTCTAACGTGACGT
CCTCCATTCTGCATATGGGTCACAGGTCCTCGCAATGTTTTCTGAACTAA
CCATCACAAACCCCACTTTACAGCTCGGCATTCCGGACTTCGTAGAAAAA
TCCAAACTGGAGCGCGAGCTCATCCAAGTAGACAAGAACCTGGCCCCACA
GAAGGAACGGGTGCTCGCCCAGGCCACTGCATACGAGACCGTCGCAACCA
AAGTCCGATACGGGGTTTATGCTATGCTGGTGGCGATTTTCTGGCGGACG
CCACTTTTGGTCATGACCCCGGCAGCCACCTGGCCTTTGTCTTCCTTTTT
TGGCTTTCCACGCTTGGGACCAGGGGCAGTGGGGGTGGCGGCGACGATTT
CTATGGTCAAGGCAGTGTTGAAGCCACTGACACCCTTGTTGAGTACCGTA
TAAATAGATAGAAAGGAAGCAAAGTAAATCAAAGATACATCAAGTAAAGA
A
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Coding sequence (CDS) from alignment at scaffold_17:91530..92430+

>mRNA_6785 ID=mRNA_6785|Name=jgi.p|Nanoce1779_2|596311|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_17:91530..92430+ (Nannochloropsis oceanica)
ATGGCCATCACGCTGCTGGAGCCTCCGTCGCCGTATTTGCTACCGCTCCT
TTTCTTTGTAATTCTGTTCGAGGCACTTCTAATCTTGGGCAAAAAGCAAC
GGTGTAAACCCGTAGCCCTGAATATCAAGGCTTTGACCTTGCGCAAGTAC
GAGCTGGCGGTGGCCATGAAAGGGCTCGGCATTCCGGACTTCGTAGAAAA
ATCCAAACTGGAGCGCGAGCTCATCCAAGTAGACAAGAACCTGGCCCCAC
AGAAGGAACGGGTGCTCGCCCAGGCCACTGCATACGAGACCGTCGCAACC
AAAGTCCGATACGGGGTTTATGCTATGCTGGTGGCGATTTTCTGGCGGAC
GCCACTTTTGGTCATGACCCCGGCAGCCACCTGGCCTTTGTCTTCCTTTT
TTGGCTTTCCACGCTTGGGACCAGGGGCAGTGGGGGTGGCGGCGACGATT
TCTATGGTCAAGGCAGTGTTGAAGCCACTGACACCCTTGTTGAGTACCGT
ATAAATGGCCATCACGCTGCTGGAGCCTCCGTCGCCGTATTTGCTACCGC
TCCTTTTCTTTGTAATTCTGTTCGAGGCACTTCTAATCTTGGGCAAAAAG
CAACGGTGTAAACCCGTAGCCCTGAATATCAAGGCTTTGACCTTGCGCAA
GTACGAGCTGGCGGTGGCCATGAAAGGGCTCGGCATTCCGGACTTCGTAG
AAAAATCCAAACTGGAGCGCGAGCTCATCCAAGTAGACAAGAACCTGGCC
CCACAGAAGGAACGGGTGCTCGCCCAGGCCACTGCATACGAGACCGTCGC
AACCAAAGTCCGATACGGGGTTTATGCTATGCTGGTGGCGATTTTCTGGC
GGACGCCACTTTTGGTCATGACCCCGGCAGCCACCTGGCCTTTGTCTTCC
TTTTTTGGCTTTCCACGCTTGGGACCAGGGGCAGTGGGGGTGGCGGCGAC
GATTTCTATGGTCAAGGCAGTGTTGAAGCCACTGACACCCTTGTTGAGTA
CCGTATAA
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Synonyms
Publications