jgi.p|Nanoce1779_2|651774, mRNA_6709 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|651774
Unique NamemRNA_6709
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length620
Alignment locationscaffold_18:498824..499837 +

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Properties
Property NameValue
TranscriptId651860
TrackFilteredModels2
ProteinId651774
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:498824..499837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651774gene_6709Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651774mRNA_6709-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6709CDS_6709Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6709 ID=mRNA_6709|Name=jgi.p|Nanoce1779_2|651774|organism=Nannochloropsis oceanica|type=mRNA|length=620bp
TAGAGCCGTCGAAGCTGGGCACTTGAGATAGCATGAGAGGTAGCCTAAAT
TATTCTAGCCTAAGCTTCATGGGTCAACTTACAAACTAACGAAGACGAGG
AAGAAATACGGAGGGTGGCTATATGGCAGGAGCGAGGCGGGCGGGGATGT
GGGGCTTGGTGCGAGTGCTGGAGAGTGAAGAGGCACTCAATGTGCTCTTA
TCACCGGAAACAAAGGAAGGCGCAAGTGAGAAAGGGAAGGAAGAAGGGCG
GTGTGATGTCGTGTTGGTGGACGCGCTGTGTTCGTCCTCGGGTGTGTCGA
GACGCCACTCTTCCCTGCGGTGGACCCTTAAACCCGAGGATGCTCTCGTC
ACCCTCCCGGCCATCCAGCATGCCCTGCTCGCGCAGGCGCAAGTTCACAA
GAAGGTGGGAGGGAGGTTAGTCTTTGCGACTTGCTCACAGCTCAAGGAGG
AGAACGAGGAGGTGTTGGCTTGGTTCTTAGAACAGTACGGAGAGGGAGGG
AAGGAGGGAGGGAAGGAAGAGTGCTTTCGGGCGTTGCCTTGGCAGGGGGA
GGAGGCGTCCTTGAGAGCGGCGACCCAGGCGTGGAGCGATCGAAACGGGG
GAGAGTGGCTAGAATCCTGA
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protein sequence of jgi.p|Nanoce1779_2|651774

>mRNA_6709-protein ID=mRNA_6709-protein|Name=jgi.p|Nanoce1779_2|651774|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MAGARRAGMWGLVRVLESEEALNVLLSPETKEGASEKGKEEGRCDVVLVD
ALCSSSGVSRRHSSLRWTLKPEDALVTLPAIQHALLAQAQVHKKVGGRLV
FATCSQLKEENEEVLAWFLEQYGEGGKEGGKEECFRALPWQGEEASLRAA
TQAWSDRNGGEWLES*
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mRNA from alignment at scaffold_18:498824..499837+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6709 ID=mRNA_6709|Name=jgi.p|Nanoce1779_2|651774|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp|location=Sequence derived from alignment at scaffold_18:498824..499837+ (Nannochloropsis oceanica)
TAGAGCCGTCGAAGCTGGGCACTTGAGATAGCATGAGAGGTAGCCTAAAT
TATTCTAGCCTAAGCTTCATGGGTCAACTTACAAACTAACGAAGACGAGG
AAGAAATACGGAGGGTGGCTATATGGCAGGAGCGAGGCGGGCGGGGATGT
GGGGCTTGGTGCGAGTGCTGGAGAGTGAAGAGGCACTCAATGTGCTCTTA
TCACCGGAAACAAAGGAAGGCGCAAGTGAGAAAGGGAAGGAAGAAGGGCG
GTGTGATGTCGTGTTGGTGGACGCGCTGTGTTCGTCCTCGGGTGTGTCGA
GACGCCACTCTTCCCTGCGGTGGACCCTTAAACCCGAGGATGCTCTCGTC
ACCCTCCCGGCCATCCAGCATGCCCTGCTCGCGCAGGCGCAAGTTCACAA
GAAGGTGGGAGGGAGGTTAGTCTTTGCGACTTGCTCACAGCTCAAGGAGG
AGAACGAGGAGGTGTTGGCTTGGTTCTTAGAACAGTACGGAGAGGGAGGG
AAGGAGGGAGGGAAGGAAGAGTGCTTTCGGGCGTTGCCTTGGCAGGGGGA
GGAGGCGTCCTTGAGAGCGGCGACCCAGGCGTGGAGCGATCGAAACGGGG
GAGAGGTAAGAAGGGAGGAGTTGGCGCCGGGGACGGTGCAGTTGTTGCCC
CACGGTGCATGGAATGGATGGCTTTTATATGGCGAGGTTCGAAAGGTATC
GATGAAGACATGGGATGGATATTGCAGAAGTGGCAACAGCAGTAGCAGCA
GGAGGAGGAGGAGAAAGAATAAGTGTAGGAGGGAAGGAGAGGGACGCGGA
TTTTTAATAAACTCGTTGATGTATATGTATATTAAGTAAAAAATGGAGGA
GGAAAACATTAGGTGCGGAGAGAAAGTACTTTTGGAGAGGGCGATAGAAA
GAGGGAGAGACAAATATTTCCAGTCCATCACCACACCTCGTCCAAAGTCA
AAAGGTTCCAACAAATGGGTCTATATGGATCTTTCAACTCCTTTTTTAGT
GGCTAGAATCCTGA
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Coding sequence (CDS) from alignment at scaffold_18:498824..499837+

>mRNA_6709 ID=mRNA_6709|Name=jgi.p|Nanoce1779_2|651774|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_18:498824..499837+ (Nannochloropsis oceanica)
ATGGCAGGAGCGAGGCGGGCGGGGATGTGGGGCTTGGTGCGAGTGCTGGA
GAGTGAAGAGGCACTCAATGTGCTCTTATCACCGGAAACAAAGGAAGGCG
CAAGTGAGAAAGGGAAGGAAGAAGGGCGGTGTGATGTCGTGTTGGTGGAC
GCGCTGTGTTCGTCCTCGGGTGTGTCGAGACGCCACTCTTCCCTGCGGTG
GACCCTTAAACCCGAGGATGCTCTCGTCACCCTCCCGGCCATCCAGCATG
CCCTGCTCGCGCAGGCGCAAGTTCACAAGAAGGTGGGAGGGAGGTTAGTC
TTTGCGACTTGCTCACAGCTCAAGGAGGAGAACGAGGAGGTGTTGGCTTG
GTTCTTAGAACAGTACGGAGAGGGAGGGAAGGAGGGAGGGAAGGAAGAGT
GCTTTCGGGCGTTGCCTTGGCAGGGGGAGGAGGCGTCCTTGAGAGCGGCG
ACCCAGGCGTGGAGCGATCGAAACGGGGGAGAGTGGCTAGAATCCTGAAT
GGCAGGAGCGAGGCGGGCGGGGATGTGGGGCTTGGTGCGAGTGCTGGAGA
GTGAAGAGGCACTCAATGTGCTCTTATCACCGGAAACAAAGGAAGGCGCA
AGTGAGAAAGGGAAGGAAGAAGGGCGGTGTGATGTCGTGTTGGTGGACGC
GCTGTGTTCGTCCTCGGGTGTGTCGAGACGCCACTCTTCCCTGCGGTGGA
CCCTTAAACCCGAGGATGCTCTCGTCACCCTCCCGGCCATCCAGCATGCC
CTGCTCGCGCAGGCGCAAGTTCACAAGAAGGTGGGAGGGAGGTTAGTCTT
TGCGACTTGCTCACAGCTCAAGGAGGAGAACGAGGAGGTGTTGGCTTGGT
TCTTAGAACAGTACGGAGAGGGAGGGAAGGAGGGAGGGAAGGAAGAGTGC
TTTCGGGCGTTGCCTTGGCAGGGGGAGGAGGCGTCCTTGAGAGCGGCGAC
CCAGGCGTGGAGCGATCGAAACGGGGGAGAGTGGCTAGAATCCTGA
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Synonyms
Publications