jgi.p|Nanoce1779_2|668047, mRNA_1113 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668047
Unique Name	mRNA_1113
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1982
Alignment location	scaffold_2:1252068..1254384 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	668133
Track	FilteredModels2
ProteinId	668047

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1252068..1254384 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668047	gene_1113	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668047	mRNA_1113-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1113	CDS_1113	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1252068..1254384+
coding sequence from alignment at scaffold_2:1252068..1254384+

mRNA sequence

>mRNA_1113 ID=mRNA_1113|Name=jgi.p|Nanoce1779_2|668047|organism=Nannochloropsis oceanica|type=mRNA|length=1982bp
ATGCCTGTGACAAAGGTGATGCAGGCGGGCATCGATGCCGCTCTCGAAGA
ATTCCATATCTGGCTCCAAACCAAAGGAGGCCTGGACCTATCTGCGTCAC
CCCTTGCTTTGCGCCGAATTCCCTTCCAGGAGAACGACCCGAGCAGGGGC
ACCAACGCAACTCAAATTACAAACCTCGGCCTCTTCACAACCAGCGCAAT
TGAAAAAGATCAAATTCTCCTTGCCATTCCTGAGTCTTTAGTGCTAACAT
CGGAACTTCCTTCTGCTGCTCTTGAAACTTTGGCGGAGATCGCAAAGCTT
GATCATATCGGTCGCTTGGCTCTTCGCATTGTATACGAGGCCAGTCGCGC
GCATGATTCCTCTTCCTCGCTCTCTTCTTCATCGTTGTCGTCCTCTTCAA
AGTTTGAAAATGGAGGATGGCTTCCTTATCTCCGCGTGCTTCCGTCGCGT
GATGACCTGAACCTTCCCTTTTTGTGGGACGAGAGGGAGGAGGAGAACGA
GAACGAGGGAAGGGAAGAGGGGGAAGAGTGTCAACAAAACGAAGGGCTCT
TAGGCTTACTGGCACCAAGCCCGCTATACGACGACATAATTGAAGTCCGC
GCTGAGATGCGACAAGAGCTGAAAAGCTTACGCGGTGCATGTACCCAAGC
AATAGCCACTACTTCAACTACCACCATCACTACCAGCAGAGACGACCAGC
ATAACGACGATGAGGCATTGTCCCTTCATCACGTCCTCCTTCCCCTCCTC
ACCTGGCAGGTTTGGACGTGGGCCCGTGCCATCGCCATGTCCCGTCCGTA
TGTCTTCCAATCTGACGCCAATGCTGCCTTCAAGACCAGCATTTGCAGCA
GCAGCAGCAACGAGAATTGCAGTAGAACCAACGCAACGATCTATCCGTTG
CTCCGCCTCATTCCCTTGATAGACATGGCCAATCACGATGACCGCGTTCA
CTATGCAGTCCAACCAGGGGACGGGGTATTCACCTCTCGAAAAGACATTC
AATTAGTAGCGGACCGCGCATACCCCCACGCAAACACTCAATTCCTCTCC
ACCTACGGCGCGCTGTCGTCAGCCTCCAAATTTTATTCATTCGGATACTT
GGACACTCTTCCCCCCCCGTTGTCCTCTTTCTCTCCCTCCTCCTCCTCGT
CCTACATTATCTCTGCAAAGGGAGTGAGCTGTCAGATGCAGCCCGGCCTT
CCAGCACAGGGCACCGCCCTGCTGGTCCTCAGCCTCGACAGCAACGGTAA
CAATAAGCAAGAGGGAGGGGCAGCAGAGAAAACGGAGCGACTTCTGTCTT
ACACGCGGAAGGCAGCAGTGTTGGCCTCGGTAGGTATGAAGGCACAGGGG
CAGCGAGTGGAGATCTCGACGCGGACGTCTTTCAACAGCTCCGGGCCGAC
ACTGGCTCAGGTCACGATTGAAGAAGTGTTGGAGGCGGAGATGGAGCAGA
AAGGAGAACTTCGAGAAGGAGGAGGGCTGGAACGCTTGCGACGCTATCTG
AGACTCAAATATTTATCTGAGGGGGACCTGGATTTTTTATCCTCTTCCTC
CTTCGCTACTTCACCGTCCTCCCCCTCCAGCCCTGAAAAGAGGTTGTGGA
CCCGCCTTTCTCTCCCTGTGAGGAAAGATGTAGAGTTGGCGGTAGCTCTC
GAGGTGGTCTCTCTGTGTTCACCGGCTTTGCAAAGCGTGCAAGATAGCTT
AGGTCGAGTGTGCCAGAGATTGCTCGAGGGAGGGAGGGAGAGCGAGATAG
ACAGACATCGGTTGGGTTTGCTGCAGACGCTGTTGCACGGCGAGATGTTG
GCGTTGCGGGCGGTGGCCGAGCTGTTCATGTCAGAGGTGGAAGCAAATTG
AAACAGGGAAGGGGTTTAAAAGCGAAGGACTGAGGGAAGAAAGGAATCCA
CCCACGTAATTGAGGAGGTTCCGACCCACACGTATTAGTGTACATAAAGC
AAAATCGAGCAGTTATAAAGAGGATTTGGAGC

protein sequence of jgi.p|Nanoce1779_2|668047

>mRNA_1113-protein ID=mRNA_1113-protein|Name=jgi.p|Nanoce1779_2|668047|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MPVTKVMQAGIDAALEEFHIWLQTKGGLDLSASPLALRRIPFQENDPSRG
TNATQITNLGLFTTSAIEKDQILLAIPESLVLTSELPSAALETLAEIAKL
DHIGRLALRIVYEASRAHDSSSSLSSSSLSSSSKFENGGWLPYLRVLPSR
DDLNLPFLWDEREEENENEGREEGEECQQNEGLLGLLAPSPLYDDIIEVR
AEMRQELKSLRGACTQAIATTSTTTITTSRDDQHNDDEALSLHHVLLPLL
TWQVWTWARAIAMSRPYVFQSDANAAFKTSICSSSSNENCSRTNATIYPL
LRLIPLIDMANHDDRVHYAVQPGDGVFTSRKDIQLVADRAYPHANTQFLS
TYGALSSASKFYSFGYLDTLPPPLSSFSPSSSSSYIISAKGVSCQMQPGL
PAQGTALLVLSLDSNGNNKQEGGAAEKTERLLSYTRKAAVLASVGMKAQG
QRVEISTRTSFNSSGPTLAQVTIEEVLEAEMEQKGELREGGGLERLRRYL
RLKYLSEGDLDFLSSSSFATSPSSPSSPEKRLWTRLSLPVRKDVELAVAL
EVVSLCSPALQSVQDSLGRVCQRLLEGGRESEIDRHRLGLLQTLLHGEML
ALRAVAELFMSEVEAN*

mRNA from alignment at scaffold_2:1252068..1254384+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1113 ID=mRNA_1113|Name=jgi.p|Nanoce1779_2|668047|organism=Nannochloropsis oceanica|type=mRNA|length=2317bp|location=Sequence derived from alignment at scaffold_2:1252068..1254384+ (Nannochloropsis oceanica)
ATGCCTGTGACAAAGGTGATGCAGGCGGGCATGTAAGACTTATTAAAACC
TCAATCCATTAATTTCACACCAAGAAGACGGACAGGTCTCTATCGCCCAC
GCCCAGGCCTCGCTTGCAGTCTGCACCGTTTCCGGCATCCACGGCCATTT
AGGTTGACCCCACCCTTTCCATGCAGTTTTGGAGGAGAAGACGAGCTTTC
CTCGTCTGGATCGGCAATCTCTTCCTCTCTCTCCGGGGCGACGCCTTCGT
GCCACTAGCACCTCGCTGCCCGAATGTAAAACAGCTTCAGGCTCTCGGTC
GTCTTCTCGCAGCAGCCTCCTCCACCTTGCCCTCCGTGCTACTACCAGCC
TTCCGACTGTCCCGCAGCGATGCCGCTCTCGAAGAATTCCATATCTGGCT
CCAAACCAAAGGAGGCCTGGACCTATCTGCGTCACCCCTTGCTTTGCGCC
GAATTCCCTTCCAGGAGAACGACCCGAGCAGGGGCACCAACGCAACTCAA
ATTACAAACCTCGGCCTCTTCACAACCAGCGCAATTGAAAAAGATCAAAT
TCTCCTTGCCATTCCTGAGTCTTTAGTGCTAACATCGGAACTTCCTTCTG
CTGCTCTTGAAACTTTGGCGGAGATCGCAAAGCTTGATCATATCGGTCGC
TTGGCTCTTCGCATTGTATACGAGGCCAGTCGCGCGCATGATTCCTCTTC
CTCGCTCTCTTCTTCATCGTTGTCGTCCTCTTCAAAGTTTGAAAATGGAG
GATGGCTTCCTTATCTCCGCGTGCTTCCGTCGCGTGATGACCTGAACCTT
CCCTTTTTGTGGGACGAGAGGGAGGAGGAGAACGAGAACGAGGGAAGGGA
AGAGGGGGAAGAGTGTCAACAAAACGAAGGGCTCTTAGGCTTACTGGCAC
CAAGCCCGCTATACGACGACATAATTGAAGTCCGCGCTGAGATGCGACAA
GAGCTGAAAAGCTTACGCGGTGCATGTACCCAAGCAATAGCCACTACTTC
AACTACCACCATCACTACCAGCAGAGACGACCAGCATAACGACGATGAGG
CATTGTCCCTTCATCACGTCCTCCTTCCCCTCCTCACCTGGCAGGTTTGG
ACGTGGGCCCGTGCCATCGCCATGTCCCGTCCGTATGTCTTCCAATCTGA
CGCCAATGCTGCCTTCAAGACCAGCATTTGCAGCAGCAGCAGCAACGAGA
ATTGCAGTAGAACCAACGCAACGATCTATCCGTTGCTCCGCCTCATTCCC
TTGATAGACATGGCCAATCACGATGACCGCGTTCACTATGCAGTCCAACC
AGGGGACGGGGTATTCACCTCTCGAAAAGACATTCAATTAGTAGCGGACC
GCGCATACCCCCACGCAAACACTCAATTCCTCTCCACCTACGGCGCGCTG
TCGTCAGCCTCCAAATTTTATTCATTCGGATACTTGGACACTCTTCCCCC
CCCGTTGTCCTCTTTCTCTCCCTCCTCCTCCTCGTCCTACATTATCTCTG
CAAAGGGAGTGAGCTGTCAGATGCAGCCCGGCCTTCCAGCACAGGGCACC
GCCCTGCTGGTCCTCAGCCTCGACAGCAACGGTAACAATAAGCAAGAGGG
AGGGGCAGCAGAGAAAACGGAGCGACTTCTGTCTTACACGCGGAAGGCAG
CAGTGTTGGCCTCGGTAGGTATGAAGGCACAGGGGCAGCGAGTGGAGATC
TCGACGCGGACGTCTTTCAACAGCTCCGGGCCGACACTGGCTCAGGTCAC
GATTGAAGAAGTGTTGGAGGCGGAGATGGAGCAGAAAGGAGAACTTCGAG
AAGGAGGAGGGCTGGAACGCTTGCGACGCTATCTGAGACTCAAATATTTA
TCTGAGGGGGACCTGGATTTTTTATCCTCTTCCTCCTTCGCTACTTCACC
GTCCTCCCCCTCCAGCCCTGAAAAGAGGTTGTGGACCCGCCTTTCTCTCC
CTGTGAGGAAAGATGTAGAGTTGGCGGTAGCTCTCGAGGTGGTCTCTCTG
TGTTCACCGGCTTTGCAAAGCGTGCAAGATAGCTTAGGTCGAGTGTGCCA
GAGATTGCTCGAGGGAGGGAGGGAGAGCGAGATAGACAGACATCGGTTGG
GTTTGCTGCAGACGCTGTTGCACGGCGAGATGTTGGCGTTGCGGGCGGTG
GCCGAGCTGTTCATGTCAGAGGTGGAAGCAAATTGAAACAGGGAAGGGGT
TTAAAAGCGAAGGACTGAGGGAAGAAAGGAATCCACCCACGTAATTGAGG
AGGTTCCGACCCACACGTATTAGTGTACATAAAGCAAAATCGAGCAGTTA
TAAAGAGGATTTGGAGC

Coding sequence (CDS) from alignment at scaffold_2:1252068..1254384+

>mRNA_1113 ID=mRNA_1113|Name=jgi.p|Nanoce1779_2|668047|organism=Nannochloropsis oceanica|type=CDS|length=3702bp|location=Sequence derived from alignment at scaffold_2:1252068..1254384+ (Nannochloropsis oceanica)
ATGCCTGTGACAAAGGTGATGCAGGCGGGCATCGATGCCGCTCTCGAAGA
ATTCCATATCTGGCTCCAAACCAAAGGAGGCCTGGACCTATCTGCGTCAC
CCCTTGCTTTGCGCCGAATTCCCTTCCAGGAGAACGACCCGAGCAGGGGC
ACCAACGCAACTCAAATTACAAACCTCGGCCTCTTCACAACCAGCGCAAT
TGAAAAAGATCAAATTCTCCTTGCCATTCCTGAGTCTTTAGTGCTAACAT
CGGAACTTCCTTCTGCTGCTCTTGAAACTTTGGCGGAGATCGCAAAGCTT
GATCATATCGGTCGCTTGGCTCTTCGCATTGTATACGAGGCCAGTCGCGC
GCATGATTCCTCTTCCTCGCTCTCTTCTTCATCGTTGTCGTCCTCTTCAA
AGTTTGAAAATGGAGGATGGCTTCCTTATCTCCGCGTGCTTCCGTCGCGT
GATGACCTGAACCTTCCCTTTTTGTGGGACGAGAGGGAGGAGGAGAACGA
GAACGAGGGAAGGGAAGAGGGGGAAGAGTGTCAACAAAACGAAGGGCTCT
TAGGCTTACTGGCACCAAGCCCGCTATACGACGACATAATTGAAGTCCGC
GCTGAGATGCGACAAGAGCTGAAAAGCTTACGCGGTGCATGTACCCAAGC
AATAGCCACTACTTCAACTACCACCATCACTACCAGCAGAGACGACCAGC
ATAACGACGATGAGGCATTGTCCCTTCATCACGTCCTCCTTCCCCTCCTC
ACCTGGCAGGTTTGGACGTGGGCCCGTGCCATCGCCATGTCCCGTCCGTA
TGTCTTCCAATCTGACGCCAATGCTGCCTTCAAGACCAGCATTTGCAGCA
GCAGCAGCAACGAGAATTGCAGTAGAACCAACGCAACGATCTATCCGTTG
CTCCGCCTCATTCCCTTGATAGACATGGCCAATCACGATGACCGCGTTCA
CTATGCAGTCCAACCAGGGGACGGGGTATTCACCTCTCGAAAAGACATTC
AATTAGTAGCGGACCGCGCATACCCCCACGCAAACACTCAATTCCTCTCC
ACCTACGGCGCGCTGTCGTCAGCCTCCAAATTTTATTCATTCGGATACTT
GGACACTCTTCCCCCCCCGTTGTCCTCTTTCTCTCCCTCCTCCTCCTCGT
CCTACATTATCTCTGCAAAGGGAGTGAGCTGTCAGATGCAGCCCGGCCTT
CCAGCACAGGGCACCGCCCTGCTGGTCCTCAGCCTCGACAGCAACGGTAA
CAATAAGCAAGAGGGAGGGGCAGCAGAGAAAACGGAGCGACTTCTGTCTT
ACACGCGGAAGGCAGCAGTGTTGGCCTCGGTAGGTATGAAGGCACAGGGG
CAGCGAGTGGAGATCTCGACGCGGACGTCTTTCAACAGCTCCGGGCCGAC
ACTGGCTCAGGTCACGATTGAAGAAGTGTTGGAGGCGGAGATGGAGCAGA
AAGGAGAACTTCGAGAAGGAGGAGGGCTGGAACGCTTGCGACGCTATCTG
AGACTCAAATATTTATCTGAGGGGGACCTGGATTTTTTATCCTCTTCCTC
CTTCGCTACTTCACCGTCCTCCCCCTCCAGCCCTGAAAAGAGGTTGTGGA
CCCGCCTTTCTCTCCCTGTGAGGAAAGATGTAGAGTTGGCGGTAGCTCTC
GAGGTGGTCTCTCTGTGTTCACCGGCTTTGCAAAGCGTGCAAGATAGCTT
AGGTCGAGTGTGCCAGAGATTGCTCGAGGGAGGGAGGGAGAGCGAGATAG
ACAGACATCGGTTGGGTTTGCTGCAGACGCTGTTGCACGGCGAGATGTTG
GCGTTGCGGGCGGTGGCCGAGCTGTTCATGTCAGAGGTGGAAGCAAATTG
AATGCCTGTGACAAAGGTGATGCAGGCGGGCATCGATGCCGCTCTCGAAG
AATTCCATATCTGGCTCCAAACCAAAGGAGGCCTGGACCTATCTGCGTCA
CCCCTTGCTTTGCGCCGAATTCCCTTCCAGGAGAACGACCCGAGCAGGGG
CACCAACGCAACTCAAATTACAAACCTCGGCCTCTTCACAACCAGCGCAA
TTGAAAAAGATCAAATTCTCCTTGCCATTCCTGAGTCTTTAGTGCTAACA
TCGGAACTTCCTTCTGCTGCTCTTGAAACTTTGGCGGAGATCGCAAAGCT
TGATCATATCGGTCGCTTGGCTCTTCGCATTGTATACGAGGCCAGTCGCG
CGCATGATTCCTCTTCCTCGCTCTCTTCTTCATCGTTGTCGTCCTCTTCA
AAGTTTGAAAATGGAGGATGGCTTCCTTATCTCCGCGTGCTTCCGTCGCG
TGATGACCTGAACCTTCCCTTTTTGTGGGACGAGAGGGAGGAGGAGAACG
AGAACGAGGGAAGGGAAGAGGGGGAAGAGTGTCAACAAAACGAAGGGCTC
TTAGGCTTACTGGCACCAAGCCCGCTATACGACGACATAATTGAAGTCCG
CGCTGAGATGCGACAAGAGCTGAAAAGCTTACGCGGTGCATGTACCCAAG
CAATAGCCACTACTTCAACTACCACCATCACTACCAGCAGAGACGACCAG
CATAACGACGATGAGGCATTGTCCCTTCATCACGTCCTCCTTCCCCTCCT
CACCTGGCAGGTTTGGACGTGGGCCCGTGCCATCGCCATGTCCCGTCCGT
ATGTCTTCCAATCTGACGCCAATGCTGCCTTCAAGACCAGCATTTGCAGC
AGCAGCAGCAACGAGAATTGCAGTAGAACCAACGCAACGATCTATCCGTT
GCTCCGCCTCATTCCCTTGATAGACATGGCCAATCACGATGACCGCGTTC
ACTATGCAGTCCAACCAGGGGACGGGGTATTCACCTCTCGAAAAGACATT
CAATTAGTAGCGGACCGCGCATACCCCCACGCAAACACTCAATTCCTCTC
CACCTACGGCGCGCTGTCGTCAGCCTCCAAATTTTATTCATTCGGATACT
TGGACACTCTTCCCCCCCCGTTGTCCTCTTTCTCTCCCTCCTCCTCCTCG
TCCTACATTATCTCTGCAAAGGGAGTGAGCTGTCAGATGCAGCCCGGCCT
TCCAGCACAGGGCACCGCCCTGCTGGTCCTCAGCCTCGACAGCAACGGTA
ACAATAAGCAAGAGGGAGGGGCAGCAGAGAAAACGGAGCGACTTCTGTCT
TACACGCGGAAGGCAGCAGTGTTGGCCTCGGTAGGTATGAAGGCACAGGG
GCAGCGAGTGGAGATCTCGACGCGGACGTCTTTCAACAGCTCCGGGCCGA
CACTGGCTCAGGTCACGATTGAAGAAGTGTTGGAGGCGGAGATGGAGCAG
AAAGGAGAACTTCGAGAAGGAGGAGGGCTGGAACGCTTGCGACGCTATCT
GAGACTCAAATATTTATCTGAGGGGGACCTGGATTTTTTATCCTCTTCCT
CCTTCGCTACTTCACCGTCCTCCCCCTCCAGCCCTGAAAAGAGGTTGTGG
ACCCGCCTTTCTCTCCCTGTGAGGAAAGATGTAGAGTTGGCGGTAGCTCT
CGAGGTGGTCTCTCTGTGTTCACCGGCTTTGCAAAGCGTGCAAGATAGCT
TAGGTCGAGTGTGCCAGAGATTGCTCGAGGGAGGGAGGGAGAGCGAGATA
GACAGACATCGGTTGGGTTTGCTGCAGACGCTGTTGCACGGCGAGATGTT
GGCGTTGCGGGCGGTGGCCGAGCTGTTCATGTCAGAGGTGGAAGCAAATT
GA

Synonyms

Publications